Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,980,940 |
+C |
coding (1/363 nt)
coding (627/627 nt) |
araH ←
araH ← |
ABC‑type arabinose transport system permease component
ABC‑type arabinose transport system permease component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,980,939 | 1 | . | C | 99.4%
| 564.4
/ ‑3.9
| 161 | coding (2/363 nt) | araH | ABC‑type arabinose transport system permease component |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (96/64); total (96/65) |
| Fisher's exact test for biased strand distribution p-value = 4.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 185 total aligned reads displayed.
CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT > NC_000913/1980847‑1981026
|
ccAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCgg > 1:3210061/1‑93 (MQ=255)
cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑c < 1:1017739/93‑1 (MQ=255)
aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cc > 2:3608230/1‑92 (MQ=255)
aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cc > 1:2365761/1‑92 (MQ=255)
aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cc < 2:556648/93‑2 (MQ=255)
aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cc > 2:752919/1‑92 (MQ=255)
gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cct > 2:334358/1‑91 (MQ=255)
gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAAACGGTACACCCGCCAGACGCGCGG‑cct > 2:1278693/1‑91 (MQ=255)
aataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctt < 2:3610101/93‑4 (MQ=255)
aataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctc < 1:4601873/93‑4 (MQ=255)
aataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctc > 2:3731539/1‑90 (MQ=255)
ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct > 2:3706733/1‑89 (MQ=255)
ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct > 2:3682582/1‑89 (MQ=255)
ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct > 2:5961170/1‑89 (MQ=255)
ttCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGt > 2:5600883/1‑93 (MQ=255)
tCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGtt < 1:6070598/93‑1 (MQ=255)
tCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGtt < 2:5786803/93‑1 (MQ=255)
cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTcc < 2:5452719/93‑1 (MQ=255)
cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTcc < 2:203908/93‑1 (MQ=255)
cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTcc > 1:3936745/1‑93 (MQ=255)
cTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGc > 2:5855412/1‑93 (MQ=255)
cTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGc > 2:2885867/1‑93 (MQ=255)
cTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGc > 2:2013611/1‑93 (MQ=255)
tATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGcc > 2:1430820/1‑93 (MQ=255)
aTCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCa > 2:1595784/1‑93 (MQ=255)
cGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAAt < 2:2625912/93‑1 (MQ=255)
gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATc > 1:2762360/1‑93 (MQ=255)
cTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCg > 1:1628845/1‑93 (MQ=255)
aTACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCa < 2:3147485/93‑1 (MQ=255)
ccAGTCTTGAGAAAAAAAAGTTAATAATGTGGGTGCGAACACCCGGGACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg < 2:1251963/93‑1 (MQ=255)
ccAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg < 2:2252861/93‑1 (MQ=255)
ccAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg < 1:1023901/93‑1 (MQ=255)
aGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtg < 1:3719745/93‑1 (MQ=255)
aGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtg < 2:2371925/93‑1 (MQ=255)
aGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtg > 1:4208261/1‑93 (MQ=255)
ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt > 2:659317/1‑93 (MQ=255)
ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt > 2:5566517/1‑93 (MQ=255)
gCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGtt > 1:5522206/1‑93 (MQ=255)
tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg > 2:5171640/1‑93 (MQ=255)
tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg > 2:4043072/1‑93 (MQ=255)
tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg > 1:3119550/1‑93 (MQ=255)
tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg > 1:950454/1‑93 (MQ=255)
gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGa > 1:2534229/1‑93 (MQ=255)
gagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAcc > 1:4351192/1‑93 (MQ=255)
aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg > 2:2631918/1‑93 (MQ=255)
aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg > 1:3897584/1‑93 (MQ=255)
aCAAAGAAAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg < 1:4692805/93‑1 (MQ=255)
cAAAGATAATAATTTTGGTGCGAACAACCGTTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg > 2:2940874/1‑93 (MQ=255)
aaaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg < 1:1424684/92‑1 (MQ=255)
aaaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg < 2:1965641/92‑1 (MQ=255)
aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACTCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggg > 2:4784813/1‑92 (MQ=255)
aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt > 1:5642221/1‑93 (MQ=255)
aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt > 1:5791770/1‑93 (MQ=255)
aaGATAATAATTTTGGTGCGAACACCCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg < 1:4086722/93‑1 (MQ=255)
aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg > 1:5179736/1‑93 (MQ=255)
aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg < 2:4857339/93‑1 (MQ=255)
aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg > 2:5248979/1‑93 (MQ=255)
aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggttg > 2:4319520/1‑91 (MQ=255)
aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtgg > 1:4878159/1‑93 (MQ=255)
gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCCATCGCCAGGGTGTTACGACCAAAggtggt > 1:416301/1‑93 (MQ=255)
gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt > 1:4733509/1‑93 (MQ=255)
taataaTTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGttt > 1:1821231/1‑93 (MQ=255)
taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt > 1:5922571/1‑93 (MQ=255)
aatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAtt > 2:1259403/1‑93 (MQ=255)
atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTc < 1:3515912/93‑1 (MQ=255)
tttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcag > 1:4676028/1‑93 (MQ=255)
tttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcag < 1:4854310/93‑1 (MQ=255)
tttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTaag > 1:4500847/1‑93 (MQ=255)
ttGGTGCGAACACCCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagc < 1:5736348/93‑1 (MQ=255)
ttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagc > 1:5599514/1‑93 (MQ=255)
tGGTCCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagca < 2:3040905/93‑1 (MQ=255)
ggTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagcag > 1:2591291/1‑93 (MQ=255)
gTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCagcagc > 2:2771062/1‑93 (MQ=255)
tGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAgcagca > 2:4966421/1‑93 (MQ=255)
gAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAc > 2:20501/1‑93 (MQ=255)
aacaacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAcc > 1:797838/1‑93 (MQ=255)
acaacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCa > 1:607562/1‑93 (MQ=255)
caacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaa > 2:3513552/1‑93 (MQ=255)
aacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaaa < 1:1377573/93‑1 (MQ=255)
ccGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGa > 2:1752208/1‑93 (MQ=255)
ccGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGa < 1:2578629/93‑1 (MQ=255)
cGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGAAAACCAAAGAt > 1:2881262/1‑93 (MQ=255)
ggTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa < 1:1160348/93‑1 (MQ=255)
acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATc < 1:3656369/93‑1 (MQ=255)
acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATc < 1:2126842/93‑1 (MQ=255)
acacCCGCCAGACGCGCGGCCTCTTCGTACCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATc < 2:3004631/93‑1 (MQ=255)
cacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCa < 1:3745040/93‑1 (MQ=255)
ccccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAg < 2:1407035/92‑1 (MQ=255)
cccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGa < 1:2302979/93‑1 (MQ=255)
ccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGac < 1:663167/93‑1 (MQ=255)
ccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGac > 2:2989982/1‑93 (MQ=255)
cGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGaca < 2:4903087/93‑1 (MQ=255)
ccAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcg > 1:5316370/1‑93 (MQ=255)
cAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgc < 2:1186280/93‑1 (MQ=255)
aGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGCGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgcg > 1:3320530/1‑93 (MQ=255)
gACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGa < 1:5114953/93‑1 (MQ=255)
aCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAc < 2:2269233/93‑1 (MQ=255)
aCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAc < 2:4118096/93‑1 (MQ=255)
aCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAc < 1:4241505/93‑1 (MQ=255)
cgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGt < 1:2953193/93‑1 (MQ=255)
|
CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT > NC_000913/1980847‑1981026
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑C‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG > NC_000913/1980848‑1981033
|
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑C‑C < SRR4302532.1052282/94‑1 (MQ=60)
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑C‑C > SRR4302532.2444671/1‑94 (MQ=60)
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑C‑C > SRR4302532.4358449/1‑94 (MQ=60)
AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct > SRR4302532.5350936/1‑92 (MQ=60)
AGAATAATTCCGACTATCACTGATACCAGGCCTGAGAGCACAAAGATAATAATTTTGGTGCGAACAACAGGTACACCCGCCCGACGCGCG‑G‑Cct > SRR4302532.3335251/1‑92 (MQ=60)
GAATAATACCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTGCACCCGCCAGACGCGCG‑G‑Cctc < SRR4302532.2672958/94‑4 (MQ=60)
AATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCT < SRR4302532.4758770/94‑1 (MQ=60)
ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTT > SRR4302532.5605940/1‑94 (MQ=60)
ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTT > SRR4302532.3729888/1‑94 (MQ=60)
TCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTC < SRR4302532.6280256/94‑1 (MQ=60)
CCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCC > SRR4302532.4069396/1‑94 (MQ=60)
CTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCC > SRR4302532.2643595/1‑94 (MQ=60)
TATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCA < SRR4302532.5953232/94‑1 (MQ=60)
ATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAA > SRR4302532.5024058/1‑94 (MQ=60)
ATCGCTGATACAAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAA > SRR4302532.358633/1‑94 (MQ=60)
CGCTGATACCAGGCCTGAGGGAACAAAGATAATAATTTTAGGGCGAACAACCGGTACACTCGCCAGACGCGCGCC‑C‑TCTTCGTTCCCGCCAATC > SRR4302532.2532450/1‑94 (MQ=60)
CGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATC > SRR4302532.2855115/1‑94 (MQ=60)
GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCG > SRR4302532.1683981/1‑94 (MQ=60)
TGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCC > SRR4302532.2813668/1‑94 (MQ=60)
CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGT < SRR4302532.1058567/94‑1 (MQ=60)
CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGT > SRR4302532.4102108/1‑94 (MQ=60)
CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGT < SRR4302532.2424398/94‑1 (MQ=60)
CAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTG > SRR4302532.4349518/1‑94 (MQ=60)
AGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGT < SRR4302532.3844616/94‑1 (MQ=60)
GGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTT > SRR4302532.5713829/1‑94 (MQ=60)
GCCTGAGAGAACAAACATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTA < SRR4302532.3849802/94‑1 (MQ=60)
CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACG > SRR4302532.982945/1‑94 (MQ=60)
CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACG > SRR4302532.3223054/1‑94 (MQ=60)
CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACG > SRR4302532.3032356/1‑94 (MQ=60)
TGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGA > SRR4302532.2618775/1‑94 (MQ=60)
AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC > SRR4302532.4498319/1‑94 (MQ=60)
AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG > SRR4302532.4029049/1‑94 (MQ=60)
AACAAAGAAAATATTTTGGTTGCGAACACCCGGTTCTCCGGCCAGACGCGCG‑G‑CGTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG < SRR4302532.453720/94‑1 (MQ=46)
ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG > SRR4302532.3234300/1‑94 (MQ=60)
ACAAAGAAAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG < SRR4302532.4852858/94‑1 (MQ=60)
CAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT < SRR4302532.2529125/94‑1 (MQ=60)
CAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT > SRR4302532.5838362/1‑94 (MQ=60)
CAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT > SRR4302532.5993128/1‑94 (MQ=60)
AAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT < SRR4302532.1472521/94‑1 (MQ=60)
AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG > SRR4302532.5358130/1‑94 (MQ=60)
AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG > SRR4302532.3150150/1‑94 (MQ=60)
AAGATAATAATTTTGGTGCGAACACCCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG < SRR4302532.4223904/94‑1 (MQ=60)
AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG > SRR4302532.5045880/1‑94 (MQ=60)
AAAATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGCC‑C‑TCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG < SRR4302532.3446404/94‑1 (MQ=60)
AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCCATCGCCAGGGTGTTACGACCAAAGGTGGT > SRR4302532.430764/1‑94 (MQ=60)
AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT > SRR4302532.4895086/1‑94 (MQ=60)
GATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTT > SRR4302532.3937381/1‑94 (MQ=60)
ATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTT > SRR4302532.1881913/1‑94 (MQ=60)
AATAATTTTGGTGCGAACAACCGGTACACACGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTA > SRR4302532.959474/1‑94 (MQ=60)
ATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAT > SRR4302532.6127652/1‑94 (MQ=60)
ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGGCAATCACCAGGGAGTTACGACCAAAGGCGGTTTTATTCA > SRR4302532.3877018/1‑94 (MQ=60)
ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCA < SRR4302532.3633628/94‑1 (MQ=60)
TTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAG > SRR4302532.4835466/1‑94 (MQ=60)
TTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAG > SRR4302532.4835467/1‑94 (MQ=60)
TTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTAAG > SRR4302532.4654510/1‑94 (MQ=60)
TTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGC > SRR4302532.5793887/1‑94 (MQ=60)
TTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGC < SRR4302532.5021346/94‑1 (MQ=60)
TTGGTGCGAACACCCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA < SRR4302532.5936070/94‑1 (MQ=60)
TGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG > SRR4302532.6190708/1‑94 (MQ=60)
TGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG > SRR4302532.2677909/1‑94 (MQ=60)
TGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG < SRR4302532.2373601/94‑1 (MQ=60)
TGCGAACACCCGGTACCCCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAA < SRR4302532.5712231/94‑1 (MQ=60)
TGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAA < SRR4302532.5996771/94‑1 (MQ=60)
TGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAA > SRR4302532.405565/1‑94 (MQ=60)
CGAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAC > SRR4302532.4473674/1‑94 (MQ=60)
GAACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACC > SRR4302532.825120/1‑94 (MQ=60)
AACAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCA > SRR4302532.628762/1‑94 (MQ=60)
CAACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAA > SRR4302532.581680/1‑94 (MQ=60)
AACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG < SRR4302532.5847000/94‑1 (MQ=60)
AACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG < SRR4302532.1423746/94‑1 (MQ=60)
AACCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG < SRR4302532.4830870/94‑1 (MQ=60)
CCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAT < SRR4302532.2664788/94‑1 (MQ=60)
CCGGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGAAAACCAAAGAT > SRR4302532.2977560/1‑94 (MQ=60)
GGTCCACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA < SRR4302532.6285806/94‑1 (MQ=60)
GGTACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA < SRR4302532.1199114/94‑1 (MQ=60)
ACCCCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA < SRR4302532.1507434/94‑1 (MQ=60)
ACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA < SRR4302532.2197904/94‑1 (MQ=60)
ACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA < SRR4302532.1438308/94‑1 (MQ=60)
ACACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA < SRR4302532.3779129/94‑1 (MQ=60)
CACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG < SRR4302532.3870918/94‑1 (MQ=60)
CCCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGA < SRR4302532.5388669/94‑1 (MQ=60)
ACCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACAAAGGGGGGTTTTATTaagagcaaaacaaagaataataaaa > SRR4302532.4684642/1‑69 (MQ=60)
CCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGAC > SRR4302532.4251151/1‑94 (MQ=60)
CCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGAC < SRR4302532.2379540/94‑1 (MQ=60)
CCCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGAC < SRR4302532.1143692/94‑1 (MQ=60)
CCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACA < SRR4302532.686095/94‑1 (MQ=60)
CCGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACA < SRR4302532.708896/94‑1 (MQ=60)
CCGCCAGACGCGCG‑GCC‑TCTTCGTTCACGCCAATCGCCAGGGTGTTACGACCAAAGGGGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACA > SRR4302532.4982270/1‑94 (MQ=60)
CGCCAGTCGCGCGTC‑C‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTAAGACCAAAGGTGGTTTTATTCAGCAGTAAACCAAAGATACTCAGACca > SRR4302532.30089/1‑92 (MQ=60)
CGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCGAATCCCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAC > SRR4302532.30091/1‑94 (MQ=60)
CGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAC < SRR4302532.127399/94‑1 (MQ=60)
CGCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAC > SRR4302532.1793623/1‑94 (MQ=60)
GCCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACG > SRR4302532.5500305/1‑94 (MQ=60)
CCAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGC > SRR4302532.3735449/1‑94 (MQ=60)
CAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG > SRR4302532.4731525/1‑94 (MQ=60)
CAGACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGCGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG > SRR4302532.3431248/1‑94 (MQ=60)
GACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAC < SRR4302532.5290843/94‑1 (MQ=60)
GACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAC < SRR4302532.5257496/94‑1 (MQ=60)
ACGCGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACG < SRR4302532.4383994/94‑1 (MQ=60)
CGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG > SRR4302532.4589212/1‑94 (MQ=60)
CGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG < SRR4302532.3051085/94‑1 (MQ=60)
CGCG‑GCC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG > SRR4302532.4029940/1‑94 (MQ=60)
ggcC‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGC > SRR4302532.1340104/4‑94 (MQ=60)
C‑C‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA < SRR4302532.1414936/94‑1 (MQ=60)
C‑C‑TCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA < SRR4302532.5710921/94‑1 (MQ=60)
C‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG > SRR4302532.1862402/1‑94 (MQ=60)
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CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑C‑TCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG > NC_000913/1980848‑1981033
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
