Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,980,940	+C	coding (1/363 nt) coding (627/627 nt)	araH ← araH ←	ABC‑type arabinose transport system permease component ABC‑type arabinose transport system permease component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,980,939	1	.	C	99.1%	753.4 / ‑1.1	213	coding (2/363 nt)	araH	ABC‑type arabinose transport system permease component
Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (129/82); total (129/84)
Fisher's exact test for biased strand distribution p-value = 1.54e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01

Only 100 of 230 total aligned reads displayed.

CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT  >  NC_000913/1980848‑1981026

cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGTCGCGCGG‑c                                                                                        <  1:6489037/93‑1 (MQ=255)

cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑c                                                                                        >  1:3120790/1‑93 (MQ=255)

cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑c                                                                                        <  2:5787423/93‑1 (MQ=255)

cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGACAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTCCACCCGCCAGACGCGCGG‑c                                                                                        <  2:4220095/93‑1 (MQ=255)

 aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cc                                                                                       >  1:6387325/1‑92 (MQ=255)

  gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cct                                                                                      >  1:5785545/1‑91 (MQ=255)

  gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cct                                                                                      >  1:767018/1‑91 (MQ=255)

    ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct                                                                                    <  1:20391/93‑5 (MQ=255)

      aatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTc                                                                                   >  2:1906505/1‑93 (MQ=255)

      aatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTc                                                                                   >  1:368443/1‑93 (MQ=255)

         tCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGtt                                                                                <  1:5584318/93‑1 (MQ=255)

           cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTcc                                                                              <  1:1501172/93‑1 (MQ=255)

           cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTcc                                                                              <  1:2773925/93‑1 (MQ=255)

            ggCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTccc                                                                             >  2:1312912/1‑93 (MQ=255)

               tATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGcc                                                                          >  2:1761534/1‑93 (MQ=255)

                 tCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTCCACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCaa                                                                        <  1:5077801/93‑1 (MQ=255)

                 tCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCaa                                                                        <  1:5941489/93‑1 (MQ=255)

                  cGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAAt                                                                       <  1:2821886/93‑1 (MQ=255)

                   gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATc                                                                      <  1:2349387/93‑1 (MQ=255)

                   gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATc                                                                      >  1:3852266/1‑93 (MQ=255)

                   gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGCTCCCGCCAATc                                                                      >  2:1091117/1‑93 (MQ=255)

                    cTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCg                                                                     >  1:6310040/1‑93 (MQ=255)

                     tGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCGCGCCAATCGc                                                                    >  1:6434427/1‑93 (MQ=255)

                     tGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGc                                                                    >  2:2324863/1‑93 (MQ=255)

                      gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGcc                                                                   <  2:3734721/93‑1 (MQ=255)

                      gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGcc                                                                   >  2:6308040/1‑93 (MQ=255)

                      gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGcc                                                                   <  1:3937346/93‑1 (MQ=255)

                      gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGcc                                                                   >  2:356330/1‑93 (MQ=255)

                        tACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAg                                                                 <  1:6595979/93‑1 (MQ=255)

                        tACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAg                                                                 <  2:3454276/93‑1 (MQ=255)

                        tACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAg                                                                 >  2:3341481/1‑93 (MQ=255)

                          ccAGGCCTGAGAGAACAAAGATAATAATTTGGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg                                                               <  1:1894567/93‑1 (MQ=255)

                           cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgt                                                              >  2:3915871/1‑93 (MQ=255)

                             ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt                                                            >  2:2700298/1‑93 (MQ=255)

                             ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt                                                            >  2:4300500/1‑93 (MQ=255)

                             ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt                                                            <  2:5104957/93‑1 (MQ=255)

                              gCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGtt                                                           <  2:1139443/93‑1 (MQ=255)

                                cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc                                                         >  2:5545106/1‑93 (MQ=255)

                                cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc                                                         >  2:2102361/1‑93 (MQ=255)

                                cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc                                                         >  2:6556407/1‑93 (MQ=255)

                                cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc                                                         <  1:1299832/93‑1 (MQ=255)

                                 tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg                                                        >  1:474178/1‑93 (MQ=255)

                                  gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGa                                                       >  2:2429686/1‑93 (MQ=255)

                                  gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGa                                                       >  2:2780341/1‑93 (MQ=255)

                                  gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCACGGCGTTACGa                                                       >  1:3243404/1‑93 (MQ=255)

                                   agagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAc                                                      <  2:6468428/93‑1 (MQ=255)

                                     agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCa                                                    >  2:1363581/1‑93 (MQ=255)

                                      gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa                                                   >  1:1606646/1‑93 (MQ=255)

                                       aaCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaag                                                  >  1:1732001/1‑92 (MQ=255)

                                        aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 >  2:3510555/1‑93 (MQ=255)

                                         cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg                                                <  2:1563283/93‑1 (MQ=255)

                                          aaaGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAggt                                               <  1:2318779/93‑1 (MQ=255)

                                          aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt                                               <  1:3590828/93‑1 (MQ=255)

                                           aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              <  2:2567407/93‑1 (MQ=255)

                                           aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              >  1:6258137/1‑93 (MQ=255)

                                           aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              >  2:1962717/1‑93 (MQ=255)

                                            aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtgg                                             >  1:701925/1‑93 (MQ=255)

                                            aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGAGCGGCCTCTTCGTTCCCGCCAATCGCCAGCGCGTTACGACCAAaggagg                                             >  2:4398183/1‑93 (MQ=255)

                                             gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt                                            >  1:4373255/1‑93 (MQ=255)

                                             gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt                                            >  1:5026032/1‑93 (MQ=255)

                                             aataataATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt                                            <  2:2445909/92‑1 (MQ=255)

                                                aataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtttt                                         >  1:2497598/1‑93 (MQ=255)

                                                aataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtttt                                         >  1:2693233/1‑93 (MQ=255)

                                                aataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtttt                                         <  1:3512914/93‑1 (MQ=255)

                                                  taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt                                       <  1:4238186/93‑1 (MQ=255)

                                                  taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt                                       >  1:5262413/1‑93 (MQ=255)

                                                  taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt                                       >  2:308920/1‑93 (MQ=255)

                                                    atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAGAGGTGGTTTTATTc                                     <  1:4052124/93‑1 (MQ=255)

                                                    atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTc                                     <  2:4935382/93‑1 (MQ=255)

                                                     ttttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTca                                    >  2:4568792/1‑93 (MQ=255)

                                                     ttttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTca                                    <  1:4564245/93‑1 (MQ=255)

                                                        tGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCACTCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagca                                 >  1:1103494/1‑93 (MQ=255)

                                                        tGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagca                                 >  2:2998897/1‑93 (MQ=255)

                                                         ggTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagcag                                >  1:3173110/1‑93 (MQ=255)

                                                         ggTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagcag                                >  1:983196/1‑93 (MQ=255)

                                                          gTGCGAACACCCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCagcagc                               <  2:6505647/93‑1 (MQ=255)

                                                          gTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCagcagc                               <  1:2217113/93‑1 (MQ=255)

                                                           tGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAgcagca                              >  2:5383747/1‑93 (MQ=255)

                                                            gCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaa                             >  2:2167207/1‑93 (MQ=255)

                                                             cGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaaa                            >  1:4799398/1‑93 (MQ=255)

                                                              gAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAc                           >  1:961074/1‑93 (MQ=255)

                                                               aacaacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAcc                          <  2:6202224/93‑1 (MQ=255)

                                                                     cGGTACACCAGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGCGGTTTTATTCAGCAGCAAACCAAAGAt                    >  2:4825642/1‑93 (MQ=255)

                                                                      ggTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa                   >  2:2670581/1‑93 (MQ=255)

                                                                       gTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATaa                  <  2:2254721/93‑1 (MQ=255)

                                                                        tACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAAt                 <  1:6041424/93‑1 (MQ=255)

                                                                          cccccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCa               <  2:3413237/91‑1 (MQ=255)

                                                                            cccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGa             <  2:5475188/93‑1 (MQ=255)

                                                                            cccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGa             >  2:6140028/1‑93 (MQ=255)

                                                                             ccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGac            >  2:1231625/1‑93 (MQ=255)

                                                                               gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGacac          <  2:4718993/93‑1 (MQ=255)

                                                                               gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGacac          <  1:4470699/93‑1 (MQ=255)

                                                                               cccAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTGTTCAGCAGCAAACCAAAGATAATCAGacac          <  1:3999509/92‑1 (MQ=255)

                                                                                 cAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgc        <  2:4118370/93‑1 (MQ=255)

                                                                                  aGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgcg       >  1:4639730/1‑93 (MQ=255)

                                                                                  aGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgcg       >  2:2970434/1‑93 (MQ=255)

                                                                                   gACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGa      >  2:3627302/1‑93 (MQ=255)

                                                                                     cgcgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACg    >  2:2836371/1‑93 (MQ=255)

                                                                                      gcgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACgg   >  2:5251837/1‑93 (MQ=255)

                                                                                       cgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGt  <  1:4299833/93‑1 (MQ=255)

CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT  >  NC_000913/1980848‑1981026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA  >  NC_000913/1980847‑1981032

CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑C                                                                                              >  SRR4302547.2508761/1‑94 (MQ=60)

CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑C                                                                                              >  SRR4302547.3182669/1‑94 (MQ=60)

 CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGTCGCGCG‑G‑CC                                                                                             <  SRR4302547.6624129/94‑1 (MQ=60)

 CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CC                                                                                             >  SRR4302547.6520594/1‑94 (MQ=60)

  AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                            >  SRR4302547.781510/1‑92 (MQ=60)

  AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                            >  SRR4302547.5905219/1‑92 (MQ=60)

    AATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCT                                                                                           <  SRR4302547.2063062/94‑1 (MQ=60)

     ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT                                                                                          >  SRR4302547.2172685/1‑94 (MQ=60)

     ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT                                                                                          <  SRR4302547.20785/94‑1 (MQ=60)

      TAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTC                                                                                         >  SRR4302547.375276/1‑94 (MQ=60)

       AATCCTGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGACCAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCG                                                                                        <  SRR4302547.1657931/94‑1 (MQ=60)

         TTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTT                                                                                      <  SRR4302547.316288/94‑1 (MQ=60)

          TCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTC                                                                                     <  SRR4302547.5699498/94‑1 (MQ=60)

           CCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCC                                                                                    <  SRR4302547.4765251/94‑1 (MQ=60)

            CGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCC                                                                                   <  SRR4302547.1531107/94‑1 (MQ=60)

            CGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCC                                                                                   <  SRR4302547.2829487/94‑1 (MQ=60)

              GCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGC                                                                                 >  SRR4302547.995655/1‑94 (MQ=60)

               CTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCC                                                                                <  SRR4302547.2875729/94‑1 (MQ=60)

               CTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCC                                                                                >  SRR4302547.4327320/1‑94 (MQ=60)

                TATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCA                                                                               <  SRR4302547.4495268/94‑1 (MQ=60)

                 ATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAA                                                                              >  SRR4302547.3219766/1‑94 (MQ=60)

                 ATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAA                                                                              >  SRR4302547.3266889/1‑94 (MQ=60)

                  TCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTCCACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAAT                                                                             <  SRR4302547.5182552/94‑1 (MQ=60)

                  TCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAAT                                                                             <  SRR4302547.6064691/94‑1 (MQ=60)

                   CGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATC                                                                            >  SRR4302547.3930692/1‑94 (MQ=60)

                   CGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATC                                                                            >  SRR4302547.6478972/1‑94 (MQ=60)

                   CGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATC                                                                            <  SRR4302547.2878333/94‑1 (MQ=60)

                    GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCG                                                                           <  SRR4302547.2397004/94‑1 (MQ=60)

                    GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCG                                                                           >  SRR4302547.6441236/1‑94 (MQ=60)

                     CTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCGCGCCAATCGC                                                                          >  SRR4302547.6568538/1‑94 (MQ=60)

                     CTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCGCGCCAATCGC                                                                          >  SRR4302547.6568542/1‑94 (MQ=60)

                       GATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCA                                                                        <  SRR4302547.4017407/94‑1 (MQ=60)

                        ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                       >  SRR4302547.516431/1‑94 (MQ=60)

                        ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                       >  SRR4302547.6631486/1‑94 (MQ=60)

                        ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                       >  SRR4302547.6556754/1‑94 (MQ=60)

                         TACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGG                                                                      <  SRR4302547.2766478/94‑1 (MQ=60)

                         TACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGG                                                                      >  SRR4302547.5829228/1‑94 (MQ=60)

                         TACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGG                                                                      <  SRR4302547.6733301/94‑1 (MQ=60)

                          ACCAGGCCTGAGATAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGG                                                                     <  SRR4302547.1154548/94‑1 (MQ=60)

                           CCAGGCCTGAGAGAACAAAGATAATAATTTGGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGT                                                                    <  SRR4302547.1932008/94‑1 (MQ=60)

                                CCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAC                                                               >  SRR4302547.3735466/1‑94 (MQ=60)

                                 CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTATACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACG                                                              >  SRR4302547.6071858/1‑94 (MQ=60)

                                 CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACG                                                              >  SRR4302547.482887/1‑94 (MQ=60)

                                 CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACG                                                              >  SRR4302547.3065356/1‑94 (MQ=60)

                                 CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACG                                                              <  SRR4302547.1325992/94‑1 (MQ=60)

                                 CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACG                                                              >  SRR4302547.3979592/1‑94 (MQ=60)

                                  TGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCACGGCGTTACGA                                                             >  SRR4302547.3308177/1‑94 (MQ=60)

                                    AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC                                                           >  SRR4302547.6022377/1‑94 (MQ=60)

                                    AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC                                                           >  SRR4302547.729041/1‑94 (MQ=60)

                                    AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACAACCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC                                                           <  SRR4302547.4025269/94‑1 (MQ=60)

                                     GAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGCC‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCA                                                          <  SRR4302547.3391056/94‑1 (MQ=60)

                                     GAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCA                                                          <  SRR4302547.5627445/94‑1 (MQ=60)

                                     GAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCA                                                          >  SRR4302547.1804733/1‑94 (MQ=60)

                                      AGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAA                                                         >  SRR4302547.1638496/1‑94 (MQ=60)

                                       GAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAG                                                        >  SRR4302547.1766026/1‑94 (MQ=60)

                                        AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       >  SRR4302547.2509252/1‑94 (MQ=60)

                                        AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       >  SRR4302547.2157998/1‑94 (MQ=60)

                                        AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       >  SRR4302547.3651617/1‑94 (MQ=60)

                                        AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       >  SRR4302547.1731046/1‑94 (MQ=60)

                                         ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      >  SRR4302547.4636858/1‑94 (MQ=60)

                                         ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      >  SRR4302547.5309784/1‑94 (MQ=60)

                                          CAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGGCAGGGTGTTAGGACCAACGGT                                                     >  SRR4302547.4462954/1‑94 (MQ=60)

                                           AAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                    <  SRR4302547.2365773/94‑1 (MQ=60)

                                           AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                    >  SRR4302547.6388141/1‑94 (MQ=60)

                                           AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                    <  SRR4302547.3664083/94‑1 (MQ=60)

                                           AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                    <  SRR4302547.3540855/94‑1 (MQ=60)

                                            AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                   >  SRR4302547.2102789/1‑94 (MQ=60)

                                            AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                   >  SRR4302547.714900/1‑94 (MQ=60)

                                            AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                   >  SRR4302547.5273331/1‑94 (MQ=60)

                                            AAGATAATAATTTTGGTGCGAACAACCGGTACACCAGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                   >  SRR4302547.6426236/1‑94 (MQ=60)

                                             AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                  >  SRR4302547.4463124/1‑94 (MQ=60)

                                             AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                  >  SRR4302547.5129880/1‑94 (MQ=60)

                                             AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                  <  SRR4302547.6410171/94‑1 (MQ=60)

                                                TAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                               <  SRR4302547.4865855/94‑1 (MQ=60)

                                                TAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                               >  SRR4302547.2747301/1‑94 (MQ=60)

                                                TAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                               >  SRR4302547.2548055/1‑94 (MQ=60)

                                                 AATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTA                                              <  SRR4302547.3584633/94‑1 (MQ=60)

                                                  ATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAT                                             >  SRR4302547.5370776/1‑94 (MQ=60)

                                                   TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT                                            <  SRR4302547.4324847/94‑1 (MQ=60)

                                                     ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAGAGGTGGTTTTATTCA                                          <  SRR4302547.4134418/94‑1 (MQ=60)

                                                     ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCA                                          >  SRR4302547.5986584/1‑94 (MQ=60)

                                                      TTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAG                                         <  SRR4302547.4672846/94‑1 (MQ=60)

                                                      TTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAG                                         <  SRR4302547.4658676/94‑1 (MQ=60)

                                                        TTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCACTCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA                                       >  SRR4302547.1125680/1‑94 (MQ=60)

                                                        TTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA                                       >  SRR4302547.2263616/1‑94 (MQ=60)

                                                         TGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG                                      >  SRR4302547.3236282/1‑94 (MQ=60)

                                                         TGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG                                      >  SRR4302547.1002328/1‑94 (MQ=60)

                                                         TGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG                                      >  SRR4302547.1339542/1‑94 (MQ=60)

                                                           GTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCA                                    <  SRR4302547.2261769/94‑1 (MQ=60)

                                                             GCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAA                                  >  SRR4302547.4898845/1‑94 (MQ=60)

                                                              CGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGTGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAC                                 >  SRR4302547.6712088/1‑94 (MQ=60)

                                                              CGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAC                                 >  SRR4302547.979739/1‑94 (MQ=60)

                                                                AACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCA                               >  SRR4302547.1536770/1‑94 (MQ=60)

                                                                  CAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAA                             >  SRR4302547.6765948/1‑94 (MQ=60)

                                                                   AACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG                            >  SRR4302547.4772111/1‑94 (MQ=60)

                                                                      CGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                         >  SRR4302547.4189595/1‑94 (MQ=60)

                                                                      CGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                         <  SRR4302547.4480638/94‑1 (MQ=60)

                                                                       GGTACTCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA                        <  SRR4302547.811047/94‑1 (MQ=60)

                                                                       GGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA                        >  SRR4302547.2655164/1‑94 (MQ=60)

                                                                         TACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATC                      <  SRR4302547.6166784/94‑1 (MQ=60)

                                                                          ACACCCACCAGACGCGCG‑GCCTCTTCGTTCCCGCCACTCGCCAGGGAGTTACGCCCAACGGTGGTTTTATTCAGAAGCAAACCAAAGATAATCA                     >  SRR4302547.5081587/1‑94 (MQ=60)

                                                                           CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG                    >  SRR4302547.2377713/1‑94 (MQ=60)

                                                                                GCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACG               <  SRR4302547.4563070/94‑1 (MQ=60)

                                                                                CCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTGTTCAGCAGCAAACCAAAGATAATCAGACACG               <  SRR4302547.4080809/94‑1 (MQ=60)

                                                                                 CCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGC              <  SRR4302547.3797841/94‑1 (MQ=60)

                                                                                  CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG             >  SRR4302547.4735827/1‑94 (MQ=60)

                                                                                  CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG             <  SRR4302547.1693543/94‑1 (MQ=60)

                                                                                  CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG             >  SRR4302547.4088236/1‑94 (MQ=60)

                                                                                      CGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGG         >  SRR4302547.6270835/1‑94 (MQ=60)

                                                                                       GCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT        <  SRR4302547.384472/94‑1 (MQ=60)

                                                                                       GCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT        >  SRR4302547.95114/1‑94 (MQ=60)

                                                                                        CGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG       >  SRR4302547.6775084/1‑94 (MQ=60)

                                                                                        CGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG       <  SRR4302547.4265997/94‑1 (MQ=60)

                                                                                        CGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG       <  SRR4302547.4388252/94‑1 (MQ=60)

                                                                                         GCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGA      >  SRR4302547.366509/1‑94 (MQ=60)

                                                                                         GCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGAGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGA      >  SRR4302547.1134861/1‑94 (MQ=60)

                                                                                          CG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAGGATAATCAGACACGCGACGGTGAG     <  SRR4302547.5448684/94‑1 (MQ=60)

                                                                                          CG‑GCCTCTTCGTTCCCGCCAATCGCCAGGCTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAG     <  SRR4302547.6664762/94‑1 (MQ=60)

                                                                                          CG‑GCCTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAG     <  SRR4302547.5013540/94‑1 (MQ=60)

                                                                                           G‑C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCC   >  SRR4302547.2023003/1‑94 (MQ=60)

                                                                                             C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA  >  SRR4302547.2868588/1‑94 (MQ=60)

CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA  >  NC_000913/1980847‑1981032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`