Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,785,180 |
Δ1 bp |
coding (413/495 nt) |
b2655 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,785,180 | 0 | T | . | 99.5%
| 1019.2
/ ‑2.8
| 217 | coding (413/495 nt) | b2655 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (132/84); total (133/84) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 224 total aligned reads displayed.
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA > NC_000913/2785092‑2785267
|
cccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc < 2:862969/92‑1 (MQ=255)
aCCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc > 1:2082002/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:1377019/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 1:3328107/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:723962/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:5861073/1‑93 (MQ=255)
cTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACgg < 1:151674/93‑1 (MQ=255)
cTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACgg < 1:6048286/93‑1 (MQ=255)
tACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGa > 2:1844905/1‑93 (MQ=255)
tACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGa > 1:3219061/1‑93 (MQ=255)
tACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGa > 2:525455/1‑93 (MQ=255)
tACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑ACGACGGa > 1:5821443/1‑93 (MQ=255)
cagcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCa < 2:1584816/93‑1 (MQ=255)
cagcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCa > 1:2819736/1‑93 (MQ=255)
agcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAg < 2:4137968/93‑1 (MQ=255)
gcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGa > 2:3669365/1‑93 (MQ=255)
agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa < 1:765480/93‑1 (MQ=255)
aTCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACt > 1:4362455/1‑93 (MQ=255)
aTCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACt > 2:2845548/1‑93 (MQ=255)
acAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc < 1:1084727/92‑1 (MQ=255)
cAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTcc > 2:4648486/1‑93 (MQ=255)
agaAAATATGTCTGAATTTGCACGTTGCCATTATGGGGATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAATCCCga > 2:3563183/1‑93 (MQ=255)
gaAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGC‑TCCGACGGACCAGAAACTCCCgaa > 1:3506374/1‑93 (MQ=255)
aaaTATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaaga > 2:5393800/1‑93 (MQ=255)
aaTATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaa < 2:1684373/93‑1 (MQ=255)
tatGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaaga > 1:3093497/1‑93 (MQ=255)
tGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaa < 1:4928199/93‑1 (MQ=255)
tGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaa > 1:4086086/1‑93 (MQ=255)
gTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaaa < 1:1193383/93‑1 (MQ=255)
gTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaaa > 2:4508178/1‑93 (MQ=255)
tCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAg > 2:2512906/1‑93 (MQ=255)
cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg > 2:5729076/1‑93 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGATGGACCAGAAACTCCCGAAGAAGAAAAggg < 1:1626729/93‑1 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg > 1:668426/1‑93 (MQ=255)
gAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACGACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGt < 1:2314945/93‑1 (MQ=255)
gAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGt < 1:1134352/93‑1 (MQ=255)
aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt > 1:5018673/1‑93 (MQ=255)
aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAACAAGAAAAGGGtt > 1:221354/1‑93 (MQ=255)
aTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTa > 1:5657455/1‑93 (MQ=255)
aTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTa < 1:1938038/93‑1 (MQ=255)
tttGCACGTTGCCATTATGGGGATATACAAATCCATCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGACAAGGGttct > 2:1731512/1‑91 (MQ=255)
gCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTgg > 2:5566131/1‑93 (MQ=255)
cACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGt > 2:711877/1‑93 (MQ=255)
aCGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGtt > 1:4519014/1‑93 (MQ=255)
aCGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGtt < 2:3868195/93‑1 (MQ=255)
cGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGttt > 1:1394276/1‑93 (MQ=255)
ttGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCa < 2:2073082/93‑1 (MQ=255)
tGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAt < 1:1187203/93‑1 (MQ=255)
tGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAt > 2:4375649/1‑93 (MQ=255)
tGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAt < 1:3368939/93‑1 (MQ=255)
gCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATg > 1:4535225/1‑93 (MQ=255)
gCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATg > 1:3749502/1‑93 (MQ=255)
ccATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGc > 1:5336912/1‑93 (MQ=255)
ttATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTa > 2:5470652/1‑93 (MQ=255)
tATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAt > 2:3205401/1‑93 (MQ=255)
aTGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATc > 2:2986137/1‑93 (MQ=255)
aTGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATc > 1:4228481/1‑93 (MQ=255)
tGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCa > 2:6148617/1‑93 (MQ=255)
tGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCa > 2:4825416/1‑93 (MQ=255)
ggTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAc > 2:4564859/1‑93 (MQ=255)
gTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAcc < 2:6020852/93‑1 (MQ=255)
tatataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCAGAAGAAGAAAAGGGATACTGGTTTCATGCTTATCAAcca > 1:923863/1‑92 (MQ=255)
tataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGa > 2:5551411/1‑93 (MQ=255)
tataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGa > 2:962999/1‑93 (MQ=255)
tataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGa > 1:6082446/1‑93 (MQ=255)
ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa > 1:2203767/1‑93 (MQ=255)
ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa < 1:3901903/93‑1 (MQ=255)
taCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAg > 2:1006256/1‑93 (MQ=255)
aaaTCCCTCCACTGACAACTTTCCGCG‑CCGAGGGACCAGAAACTCCCGAAGAAGAAAAGAGTTACTGGTTTCATGCTTATCAACCCGAAGATc < 1:1466813/93‑1 (MQ=255)
aaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCt > 1:3003431/1‑93 (MQ=255)
aTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCtt < 1:2411718/93‑1 (MQ=255)
cccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTg < 2:213443/93‑1 (MQ=255)
cccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTg > 1:4189758/1‑93 (MQ=255)
ccTCCAGTGACAACTTTCCGCG‑CCGACGGCCCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGt > 1:1791285/1‑93 (MQ=255)
ccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGt > 1:3401395/1‑93 (MQ=255)
tCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAc > 2:1127291/1‑93 (MQ=255)
ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcc > 1:1060137/1‑93 (MQ=255)
ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcc > 2:2851178/1‑93 (MQ=255)
cAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcca < 2:1871502/93‑1 (MQ=255)
cAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcca < 2:6059091/93‑1 (MQ=255)
cAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcca < 1:2728719/93‑1 (MQ=255)
aGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccat > 1:5094865/1‑93 (MQ=255)
aGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTCTAccat > 2:5162955/1‑93 (MQ=255)
tGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcc > 1:5903170/1‑93 (MQ=255)
gACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcca < 1:2604145/93‑1 (MQ=255)
gACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcca > 2:5896928/1‑93 (MQ=255)
gACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcca > 1:3673783/1‑93 (MQ=255)
cAACTTTCCGCG‑CCGACGTACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTTTACCATCCATa < 1:2267116/93‑1 (MQ=255)
cAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATa < 1:1546587/93‑1 (MQ=255)
aaCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATaa < 2:3417529/93‑1 (MQ=255)
aaCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATaa > 1:4582540/1‑93 (MQ=255)
aCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAt > 1:3297979/1‑93 (MQ=255)
aCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAt > 1:2130907/1‑93 (MQ=255)
aCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAt > 1:5112952/1‑93 (MQ=255)
cTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATc < 1:576208/93‑1 (MQ=255)
cTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATc < 1:3815566/93‑1 (MQ=255)
tttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATcc > 1:1315012/1‑93 (MQ=255)
tttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGGTTCATGCTTATTAACCCGAAGATCTTTGTACCATCCATAATcc > 2:4308575/1‑93 (MQ=255)
ttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCa > 1:870615/1‑93 (MQ=255)
tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa < 2:2406811/93‑1 (MQ=255)
|
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA > NC_000913/2785092‑2785267
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG > NC_000913/2785087‑2785273
|
ATGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGC > SRR4302532.1267675/1‑94 (MQ=60)
CACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAC > SRR4302532.2151403/1‑94 (MQ=60)
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACG > SRR4302532.3439089/1‑94 (MQ=60)
CCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGG > SRR4302532.1244312/1‑94 (MQ=60)
CCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGG < SRR4302532.3911068/94‑1 (MQ=60)
CTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGA < SRR4302532.156753/94‑1 (MQ=60)
CTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGA < SRR4302532.156751/94‑1 (MQ=60)
CTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGA < SRR4302532.6257129/94‑1 (MQ=60)
CTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGA > SRR4302532.3325944/1‑94 (MQ=60)
CTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑ACGACGGA > SRR4302532.6023617/1‑94 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC < SRR4302532.5903158/94‑1 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC > SRR4302532.2052413/1‑94 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC > SRR4302532.2052412/1‑94 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA > SRR4302532.2914105/1‑94 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA < SRR4302532.1463330/94‑1 (MQ=60)
CAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAG < SRR4302532.6081533/94‑1 (MQ=60)
CAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAG > SRR4302532.5052508/1‑94 (MQ=60)
CAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAG < SRR4302532.5044718/94‑1 (MQ=60)
CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA < SRR4302532.5471078/94‑1 (MQ=60)
AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC < SRR4302532.791894/94‑1 (MQ=60)
GATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACT > SRR4302532.4510310/1‑94 (MQ=60)
ACAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCC < SRR4302532.1121069/94‑1 (MQ=60)
aaagaAAAATATGTC‑GAATTTGCCCGTTGCCATTAATGGGATTAT‑CAAAACCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG < SRR4302532.3564738/89‑1 (MQ=35)
CAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCTCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCC < SRR4302532.5259941/94‑1 (MQ=60)
CAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCC > SRR4302532.1591300/1‑94 (MQ=60)
AGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG > SRR4302532.3836032/1‑94 (MQ=60)
GAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGA < SRR4302532.1420129/94‑1 (MQ=60)
AGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCGGCG‑CCGACGGACCAGAAACTCCCGCA > SRR4302532.2586844/1‑94 (MQ=60)
AGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGC‑TCCGACGGACCAGAAACTCCCGAA > SRR4302532.3623820/1‑94 (MQ=60)
GAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAG < SRR4302532.795403/94‑1 (MQ=60)
GAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAG > SRR4302532.2743605/1‑94 (MQ=60)
AAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGA < SRR4302532.3186638/94‑1 (MQ=60)
AAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGA > SRR4302532.2331389/1‑94 (MQ=60)
AAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAA < SRR4302532.5480572/94‑1 (MQ=60)
ATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGA > SRR4302532.3196039/1‑94 (MQ=60)
ATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAA > SRR4302532.4223252/1‑94 (MQ=60)
TGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAA > SRR4302532.3329287/1‑94 (MQ=60)
TGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAA < SRR4302532.5097436/94‑1 (MQ=60)
TGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAA < SRR4302532.1191627/94‑1 (MQ=60)
GTCTGAGTTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG < SRR4302532.1233281/94‑1 (MQ=60)
GTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGCAGAAAAG < SRR4302532.6257765/94‑1 (MQ=60)
GTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG > SRR4302532.2173514/1‑94 (MQ=60)
GTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG < SRR4302532.1233282/94‑1 (MQ=60)
TCTGAATTTGCGCGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG < SRR4302532.4684785/94‑1 (MQ=60)
TCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAACCTCCCGAAGAAGAAAAGG < SRR4302532.3431410/94‑1 (MQ=60)
TCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG > SRR4302532.1833524/1‑94 (MQ=60)
CTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGG > SRR4302532.691485/1‑94 (MQ=60)
TGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGATGGACCAGAAACTCCCGAAGAAGAAAAGGGT < SRR4302532.1681804/94‑1 (MQ=60)
TGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGT < SRR4302532.2829800/94‑1 (MQ=60)
GATTTTGCACGTTGCCATA‑ATGTGTATATACAAATCTCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT < SRR4302532.3742554/94‑1 (MQ=60)
GAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACGACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT < SRR4302532.2392004/94‑1 (MQ=60)
GAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT < SRR4302532.1172203/94‑1 (MQ=60)
GAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT > SRR4302532.5190782/1‑94 (MQ=60)
GAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT > SRR4302532.228913/1‑94 (MQ=60)
GAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAACAAGAAAAGGGTT > SRR4302532.228915/1‑94 (MQ=60)
AATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA > SRR4302532.5854482/1‑94 (MQ=60)
ATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAC < SRR4302532.2002506/94‑1 (MQ=60)
ATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAC > SRR4302532.2332665/1‑94 (MQ=60)
ATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAC > SRR4302532.298157/1‑94 (MQ=60)
TTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACT < SRR4302532.4022525/94‑1 (MQ=60)
TTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACT > SRR4302532.1107370/1‑94 (MQ=60)
TTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTG < SRR4302532.783225/94‑1 (MQ=60)
TGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGG > SRR4302532.351013/1‑94 (MQ=60)
TGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGG > SRR4302532.4015343/1‑94 (MQ=60)
gctccttgcaATT‑ATGGGTATTTACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGT < SRR4302532.6223636/84‑1 (MQ=60)
CACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTT > SRR4302532.4673278/1‑94 (MQ=60)
ACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTT > SRR4302532.2380610/1‑94 (MQ=60)
ACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTT > SRR4302532.1441023/1‑94 (MQ=60)
CGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTC > SRR4302532.6009462/1‑94 (MQ=60)
GTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCA > SRR4302532.4416828/1‑94 (MQ=60)
TGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATG < SRR4302532.3481564/94‑1 (MQ=60)
TGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATG < SRR4302532.1226891/94‑1 (MQ=60)
TGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATG > SRR4302532.3875555/1‑94 (MQ=60)
TGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATG > SRR4302532.4690020/1‑94 (MQ=60)
GCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGC < SRR4302532.919878/94‑1 (MQ=60)
GCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGC > SRR4302532.5522008/1‑94 (MQ=60)
TT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAT < SRR4302532.3793217/94‑1 (MQ=60)
T‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATC > SRR4302532.4370429/1‑94 (MQ=60)
ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA < SRR4302532.2441641/94‑1 (MQ=60)
TGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAA < SRR4302532.842099/94‑1 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC > SRR4302532.5284676/1‑94 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC > SRR4302532.3310548/1‑94 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC < SRR4302532.5835682/94‑1 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC < SRR4302532.4368878/94‑1 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC > SRR4302532.4289814/1‑94 (MQ=60)
GGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACC > SRR4302532.6070016/1‑94 (MQ=60)
GGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACC > SRR4302532.4215896/1‑94 (MQ=60)
GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC > SRR4302532.5186771/1‑94 (MQ=60)
GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCAGAAGAAGAAAAGGGATACTGGTTTCATGCTTATCAACCA > SRR4302532.955524/1‑94 (MQ=60)
ATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGA > SRR4302532.6292485/1‑94 (MQ=60)
ATATACAAATCCCTCCAGAAACAACTTTCCGCG‑CCGCCGGACCAGAAAATCCCGAAGAAGAAAAGGGTGACTCGTGTCATGCTTAGCCACCCGA > SRR4302532.163706/1‑94 (MQ=39)
TATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAA > SRR4302532.1886091/1‑94 (MQ=60)
TATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAA > SRR4302532.4657985/1‑94 (MQ=60)
TATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAA > SRR4302532.2277088/1‑94 (MQ=60)
ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG > SRR4302532.992913/1‑94 (MQ=60)
ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG < SRR4302532.4033496/94‑1 (MQ=60)
CAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATC > SRR4302532.2780722/1‑94 (MQ=60)
AAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCT > SRR4302532.3102626/1‑94 (MQ=60)
AAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCT > SRR4302532.440127/1‑94 (MQ=60)
AAATCCCTCCACTGACAACTTTCCGCG‑CCGAGGGACCAGAAACTCCCGAAGAAGAAAAGAGTTACTGGTTTCATGCTTATCAACCCGAAGATCT < SRR4302532.1516223/94‑1 (MQ=60)
AATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTT < SRR4302532.3458414/94‑1 (MQ=60)
ATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTT < SRR4302532.4701042/94‑1 (MQ=60)
ATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTT < SRR4302532.2491942/94‑1 (MQ=60)
TCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTG > SRR4302532.4330330/1‑94 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGCCCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT > SRR4302532.1851132/1‑94 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT > SRR4302532.1570072/1‑94 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT > SRR4302532.6299891/1‑94 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT > SRR4302532.3515276/1‑94 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT < SRR4302532.2572361/94‑1 (MQ=60)
CCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTA > SRR4302532.1136/1‑94 (MQ=60)
TCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTATC > SRR4302532.1266072/1‑94 (MQ=60)
TCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACC > SRR4302532.1095847/1‑94 (MQ=60)
CAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCAT > SRR4302532.5270056/1‑94 (MQ=60)
CAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCAT < SRR4302532.2820468/94‑1 (MQ=60)
AGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATC > SRR4302532.6190647/1‑94 (MQ=60)
GTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCC > SRR4302532.6107584/1‑94 (MQ=60)
TGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCA > SRR4302532.3797189/1‑94 (MQ=60)
GACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCAT < SRR4302532.2691234/94‑1 (MQ=60)
ACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATA < SRR4302532.3541620/94‑1 (MQ=60)
CAACTTTCCGCG‑CCGACGTACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTTTACCATCCATAA < SRR4302532.2342361/94‑1 (MQ=60)
CAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAA < SRR4302532.1598846/94‑1 (MQ=60)
CAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAA > SRR4302532.4738789/1‑94 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302532.5288759/1‑94 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302532.2202080/1‑94 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302532.2202079/1‑94 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302532.3407723/1‑94 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC < SRR4302532.3944380/94‑1 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC > SRR4302532.1358980/1‑94 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC > SRR4302532.3526785/1‑94 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC > SRR4302532.330121/1‑94 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC < SRR4302532.596301/94‑1 (MQ=60)
TTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCA > SRR4302532.900430/1‑94 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT > SRR4302532.633455/1‑94 (MQ=60)
CGCG‑CCGACGGACCAGAGACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGG > SRR4302532.6060122/1‑94 (MQ=60)
CGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGG < SRR4302532.3546563/94‑1 (MQ=60)
GCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG < SRR4302532.1721454/94‑1 (MQ=60)
|
ATGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATT‑ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG > NC_000913/2785087‑2785273
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
