Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,785,180 |
Δ1 bp |
coding (413/495 nt) |
b2655 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,785,180 | 0 | T | . | 100.0%
| 1044.9
/ NA
| 220 | coding (413/495 nt) | b2655 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (108/112); total (108/112) |
Only 100 of 222 total aligned reads displayed.
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA > NC_000913/2785092‑2785267
|
aCCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc > 1:3997926/1‑93 (MQ=255)
aCCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc > 2:172731/1‑93 (MQ=255)
aCCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc < 2:223327/93‑1 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCCTTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:3090069/1‑93 (MQ=255)
cTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACgg > 2:2220476/1‑93 (MQ=255)
tACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGa < 2:5626855/93‑1 (MQ=255)
gaCCAGCAGAGCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGa < 2:389067/92‑1 (MQ=255)
aCCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAc < 2:1821150/93‑1 (MQ=255)
aCCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAc < 1:4941849/93‑1 (MQ=255)
aCCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAc > 2:553565/1‑93 (MQ=255)
aCCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAc < 1:2136691/93‑1 (MQ=255)
ccAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAcc > 2:2159877/1‑93 (MQ=255)
ccAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAcc < 1:3924114/93‑1 (MQ=255)
cagcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCa > 2:4304982/1‑93 (MQ=255)
agcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAg > 2:5385893/1‑93 (MQ=255)
gcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGa > 1:1574601/1‑93 (MQ=255)
agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa > 1:1951498/1‑93 (MQ=255)
agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa > 1:3518155/1‑93 (MQ=255)
gATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAc < 2:3073567/93‑1 (MQ=255)
gATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAc < 1:414826/93‑1 (MQ=255)
tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc > 2:3677995/1‑93 (MQ=255)
tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc < 2:2463521/93‑1 (MQ=255)
cAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTcc > 2:274395/1‑93 (MQ=255)
agagAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTccc > 1:3287156/1‑93 (MQ=255)
gagaAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCg > 2:374534/1‑93 (MQ=255)
gagaAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCg > 1:4206591/1‑93 (MQ=255)
atatGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaag < 2:761215/93‑1 (MQ=255)
atGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaagaa > 1:5183247/1‑93 (MQ=255)
tGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaa > 1:651128/1‑93 (MQ=255)
gTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaaa > 1:467107/1‑93 (MQ=255)
gTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaaa < 1:1040200/93‑1 (MQ=255)
tCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAg > 1:3498595/1‑93 (MQ=255)
cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg < 1:1743829/93‑1 (MQ=255)
cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg < 1:5754395/93‑1 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg < 2:1174758/93‑1 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg < 2:4927185/93‑1 (MQ=255)
gAATTTGCACGTGGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGt < 1:5425932/93‑1 (MQ=255)
aTTTGCACGTTGCAATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTa > 2:6054134/1‑93 (MQ=255)
tttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAc > 2:3815474/1‑93 (MQ=255)
tttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAc > 2:720031/1‑93 (MQ=255)
tGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTg < 2:5121445/93‑1 (MQ=255)
cACGTTTCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGt < 1:6632553/93‑1 (MQ=255)
actttGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGtt < 1:5029499/90‑1 (MQ=255)
cGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGttt < 1:3650604/93‑1 (MQ=255)
cGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGttt < 1:3216262/93‑1 (MQ=255)
gTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTc > 2:1096952/1‑93 (MQ=255)
ttGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCa > 1:5955941/1‑93 (MQ=255)
ttGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCa > 1:3084624/1‑93 (MQ=255)
tGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAt > 1:2937823/1‑93 (MQ=255)
ccATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGc < 1:570614/93‑1 (MQ=255)
ttATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTa < 1:2596696/93‑1 (MQ=255)
ttATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTa > 2:6171792/1‑93 (MQ=255)
ttATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTa > 2:4067552/1‑93 (MQ=255)
tATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAt > 2:1402607/1‑93 (MQ=255)
aTGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATc < 1:4129063/93‑1 (MQ=255)
tGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCa > 2:5543675/1‑93 (MQ=255)
gggTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCaa < 2:4886406/93‑1 (MQ=255)
ggTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAc > 1:966363/1‑93 (MQ=255)
gTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAATCTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAcc < 2:2695752/93‑1 (MQ=255)
gTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAcc > 2:3001124/1‑93 (MQ=255)
gTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAcc < 1:1436821/93‑1 (MQ=255)
tatataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAccc < 1:5146947/93‑1 (MQ=255)
tatataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAccc < 1:2424565/93‑1 (MQ=255)
ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa < 2:5369525/93‑1 (MQ=255)
taCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAg < 2:323244/93‑1 (MQ=255)
taCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAg > 1:3264433/1‑93 (MQ=255)
aCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGa < 2:4410491/93‑1 (MQ=255)
aCAAAGCCCGCCAGTGACAACTTTCCGCG‑CAGACGGACCAGAATCTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGa < 2:2825474/93‑1 (MQ=255)
cAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAt > 1:5494702/1‑93 (MQ=255)
cAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAt > 2:3400833/1‑93 (MQ=255)
cAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAt > 2:198978/1‑93 (MQ=255)
aaaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATc < 2:4979111/93‑1 (MQ=255)
aaaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATc > 2:4051673/1‑93 (MQ=255)
aaaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATc > 1:752574/1‑93 (MQ=255)
aaaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATc > 2:1263591/1‑93 (MQ=255)
aaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCt > 1:2688650/1‑93 (MQ=255)
aTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCtt > 2:1910190/1‑93 (MQ=255)
acccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCttt < 2:4389747/92‑1 (MQ=255)
cTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTa > 1:2839231/1‑93 (MQ=255)
tCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAGTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAc < 2:6130890/93‑1 (MQ=255)
ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcc < 1:4418457/93‑1 (MQ=255)
ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcc > 1:4821074/1‑93 (MQ=255)
aGTGACACCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccat < 2:3997649/93‑1 (MQ=255)
gTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatc > 1:2254602/1‑93 (MQ=255)
gTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatc < 2:6555004/93‑1 (MQ=255)
gTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatc < 2:6478179/93‑1 (MQ=255)
gTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatc < 1:4049072/93‑1 (MQ=255)
tGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcc < 2:4822936/93‑1 (MQ=255)
gACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcca < 2:4085569/93‑1 (MQ=255)
aCAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatccat < 2:4703505/93‑1 (MQ=255)
catcTTTCCGCG‑CCGACGGACCAGAATCTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATa < 2:5735979/90‑1 (MQ=255)
aaCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATaa > 2:3163024/1‑93 (MQ=255)
aCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAt > 2:1574101/1‑93 (MQ=255)
cTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATc < 2:4772684/93‑1 (MQ=255)
tttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATcc < 1:4770002/93‑1 (MQ=255)
tttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATcc < 1:1493672/93‑1 (MQ=255)
tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa < 1:1204328/93‑1 (MQ=255)
tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa < 1:1867465/93‑1 (MQ=255)
tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa < 1:378701/93‑1 (MQ=255)
tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa < 1:5567737/93‑1 (MQ=255)
|
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA > NC_000913/2785092‑2785267
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG > NC_000913/2785088‑2785273
|
TGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGCC > SRR4302547.5175817/1‑94 (MQ=60)
CCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGA > SRR4302547.5261513/1‑94 (MQ=60)
CACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAC > SRR4302547.5863082/1‑94 (MQ=60)
CACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAC > SRR4302547.4079194/1‑94 (MQ=60)
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACG > SRR4302547.3283981/1‑94 (MQ=60)
CCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGG < SRR4302547.49871/94‑1 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC < SRR4302547.5044185/94‑1 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC < SRR4302547.2179256/94‑1 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA > SRR4302547.4089083/1‑94 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA < SRR4302547.4003906/94‑1 (MQ=60)
CAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAG > SRR4302547.1626725/1‑94 (MQ=60)
AGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGA > SRR4302547.1605935/1‑94 (MQ=60)
CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA > SRR4302547.3589970/1‑94 (MQ=60)
CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA > SRR4302547.1990202/1‑94 (MQ=60)
AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC > SRR4302547.1099457/1‑94 (MQ=60)
GATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACT > SRR4302547.1800704/1‑94 (MQ=60)
GATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACT > SRR4302547.6759940/1‑94 (MQ=60)
GATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACT < SRR4302547.422518/94‑1 (MQ=60)
ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC < SRR4302547.3554262/94‑1 (MQ=60)
ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC > SRR4302547.5973793/1‑94 (MQ=60)
TCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCC > SRR4302547.2495046/1‑94 (MQ=60)
CAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCC > SRR4302547.3353101/1‑94 (MQ=60)
AGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG > SRR4302547.4292430/1‑94 (MQ=60)
GAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAG < SRR4302547.5627447/94‑1 (MQ=60)
AAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAA < SRR4302547.5843897/94‑1 (MQ=60)
AATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAG < SRR4302547.3796974/94‑1 (MQ=60)
AATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAG > SRR4302547.1527185/1‑94 (MQ=60)
TATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCATTGACAACTTTCCGCG‑CCGACGGACCAGAAGCTCCCGAAGAAGAA < SRR4302547.3342402/94‑1 (MQ=60)
TATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAA > SRR4302547.5289914/1‑94 (MQ=60)
ATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAA > SRR4302547.663119/1‑94 (MQ=60)
TGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAA < SRR4302547.5133715/94‑1 (MQ=60)
TGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAA > SRR4302547.475713/1‑94 (MQ=60)
GTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG > SRR4302547.814714/1‑94 (MQ=60)
GTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG > SRR4302547.3569999/1‑94 (MQ=60)
GTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG < SRR4302547.1060700/94‑1 (MQ=60)
CTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGG < SRR4302547.5873364/94‑1 (MQ=60)
CTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGG < SRR4302547.3253904/94‑1 (MQ=60)
CTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGG < SRR4302547.1778192/94‑1 (MQ=60)
TGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGT < SRR4302547.510108/94‑1 (MQ=60)
GAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT > SRR4302547.2464828/1‑94 (MQ=60)
GAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT > SRR4302547.2201058/1‑94 (MQ=60)
GAATTTGCACGTGGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT < SRR4302547.5538138/94‑1 (MQ=60)
ATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAC < SRR4302547.2436005/94‑1 (MQ=60)
TGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGG < SRR4302547.5437411/94‑1 (MQ=60)
TGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGG < SRR4302547.1346212/94‑1 (MQ=60)
CACGTTTCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTT < SRR4302547.6770615/94‑1 (MQ=60)
CACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTT < SRR4302547.4172440/94‑1 (MQ=60)
ACTTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTT < SRR4302547.5133422/94‑1 (MQ=60)
CGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTC < SRR4302547.3725064/94‑1 (MQ=60)
CGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTC < SRR4302547.3280418/94‑1 (MQ=60)
GTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCA > SRR4302547.6079442/1‑94 (MQ=60)
GTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCA > SRR4302547.3145846/1‑94 (MQ=60)
TTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAT > SRR4302547.2996361/1‑94 (MQ=60)
CCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCT < SRR4302547.580869/94‑1 (MQ=60)
CATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTT < SRR4302547.4263687/94‑1 (MQ=60)
CATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTT < SRR4302547.2117457/94‑1 (MQ=60)
ATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTA > SRR4302547.5555478/1‑94 (MQ=60)
ATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTA > SRR4302547.6789529/1‑94 (MQ=60)
TTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAT > SRR4302547.174454/1‑94 (MQ=60)
TTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAT < SRR4302547.2649053/94‑1 (MQ=60)
ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA > SRR4302547.4669734/1‑94 (MQ=60)
ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA < SRR4302547.4213051/94‑1 (MQ=60)
ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA > SRR4302547.4215468/1‑94 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC > SRR4302547.985128/1‑94 (MQ=60)
GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC < SRR4302547.4323728/94‑1 (MQ=60)
GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC < SRR4302547.1465549/94‑1 (MQ=60)
TATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCG < SRR4302547.5277020/94‑1 (MQ=60)
TATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCG > SRR4302547.370205/1‑94 (MQ=60)
TATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCG < SRR4302547.5252952/94‑1 (MQ=60)
TATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCG < SRR4302547.2473627/94‑1 (MQ=60)
ATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGA > SRR4302547.4892311/1‑94 (MQ=60)
ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG > SRR4302547.3329732/1‑94 (MQ=60)
ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG < SRR4302547.357718/94‑1 (MQ=60)
TACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGA < SRR4302547.4011470/94‑1 (MQ=60)
ACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAT < SRR4302547.1491010/94‑1 (MQ=60)
ACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAT > SRR4302547.5608152/1‑94 (MQ=60)
ACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAT < SRR4302547.6475328/94‑1 (MQ=60)
CAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATC > SRR4302547.766765/1‑94 (MQ=60)
AAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCT > SRR4302547.2742619/1‑94 (MQ=60)
AATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTT < SRR4302547.3022233/94‑1 (MQ=60)
AATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTT > SRR4302547.5508046/1‑94 (MQ=60)
ATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTT < SRR4302547.2901961/94‑1 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT < SRR4302547.2825122/94‑1 (MQ=60)
CCTCCAGTGGCAACTTTCCGTG‑CCGACGGACCAGAAACTCCCGCAGAAGAAAAAGGTTACTGGTTTCCTGCTTATCTACCCGAAtattttttta > SRR4302547.6635517/1‑84 (MQ=53)
CCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTA > SRR4302547.4784417/1‑94 (MQ=60)
CCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTA > SRR4302547.2895975/1‑94 (MQ=60)
CTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC > SRR4302547.4265171/1‑94 (MQ=60)
TCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACC > SRR4302547.4920984/1‑94 (MQ=60)
CCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCA < SRR4302547.4509646/94‑1 (MQ=60)
CAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCAT > SRR4302547.4904741/1‑94 (MQ=60)
CAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCAT < SRR4302547.5791091/94‑1 (MQ=60)
AGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATC > SRR4302547.2300129/1‑94 (MQ=60)
GTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCC < SRR4302547.4131306/94‑1 (MQ=60)
ACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATA < SRR4302547.3912405/94‑1 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302547.1919802/1‑94 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302547.3990726/1‑94 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC > SRR4302547.3453608/1‑94 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC < SRR4302547.2987025/94‑1 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC < SRR4302547.795544/94‑1 (MQ=60)
TTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCA < SRR4302547.4868825/94‑1 (MQ=60)
TTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCA < SRR4302547.1523470/94‑1 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT < SRR4302547.2729894/94‑1 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT < SRR4302547.1228635/94‑1 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT < SRR4302547.1904343/94‑1 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT < SRR4302547.385718/94‑1 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT < SRR4302547.5682546/94‑1 (MQ=60)
CCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCATTG < SRR4302547.6686556/94‑1 (MQ=60)
CGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGG < SRR4302547.6524848/94‑1 (MQ=60)
CGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGG < SRR4302547.5336231/94‑1 (MQ=60)
GCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGG > SRR4302547.3381669/1‑94 (MQ=60)
GCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGG > SRR4302547.3147213/1‑94 (MQ=60)
GCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGG < SRR4302547.187224/94‑1 (MQ=60)
GCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGG < SRR4302547.546539/94‑1 (MQ=60)
GCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG < SRR4302547.6439121/94‑1 (MQ=60)
GCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG < SRR4302547.1566539/94‑1 (MQ=60)
GCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG < SRR4302547.4582087/94‑1 (MQ=60)
GCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG < SRR4302547.1275510/94‑1 (MQ=60)
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TGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG > NC_000913/2785088‑2785273
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
