Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,803,648 |
T→C |
S271S (AGT→AGC) |
proV → |
ATP‑binding component of transport system for glycine, betaine and proline |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,803,648 | 0 | T | C | 99.0%
| 734.8
/ ‑2.4
| 206 | S271S (AGT→AGC) | proV | ATP‑binding component of transport system for glycine, betaine and proline |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (101/103); total (101/105) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.85e-01 |
Only 100 of 208 total aligned reads displayed.
TGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGAA > NC_000913/2803558‑2803737
|
tGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCa > 2:3890889/1‑93 (MQ=255)
aaGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAgg > 2:2500405/1‑93 (MQ=255)
gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTa > 2:5511196/1‑93 (MQ=255)
gTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTc < 1:4266173/93‑1 (MQ=255)
tACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCa > 1:2719715/1‑93 (MQ=255)
tACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCa > 2:2316537/1‑93 (MQ=255)
tACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCa > 2:4856640/1‑93 (MQ=255)
cAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGt < 2:3412031/93‑1 (MQ=255)
aGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTg < 1:5793470/93‑1 (MQ=255)
ggTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGc < 1:4136934/93‑1 (MQ=255)
gTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCg > 1:4826944/1‑93 (MQ=255)
tCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGa < 1:1257544/93‑1 (MQ=255)
cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGaa < 2:2594028/93‑1 (MQ=255)
ggCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGaaa < 1:4918878/93‑1 (MQ=255)
cacaCCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGa < 1:3299472/93‑1 (MQ=255)
acacCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGat > 2:773350/1‑93 (MQ=255)
acCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGatat < 1:2893289/93‑1 (MQ=255)
ccGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATAtt < 1:784764/93‑1 (MQ=255)
ccGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATAtt < 1:3853358/93‑1 (MQ=255)
cGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTg > 2:5748114/1‑93 (MQ=255)
ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGc < 1:1073430/93‑1 (MQ=255)
gATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGcc < 1:1876489/93‑1 (MQ=255)
gATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGcc > 2:5883988/1‑93 (MQ=255)
aTGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGccc > 1:1825117/1‑93 (MQ=255)
aTGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGccc > 2:1465590/1‑93 (MQ=255)
aTGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGccc < 2:4347041/93‑1 (MQ=255)
tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCccg > 2:5096561/1‑93 (MQ=255)
tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCccg > 1:3726493/1‑93 (MQ=255)
tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCccg > 1:3770635/1‑93 (MQ=255)
ttCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGa < 2:4213605/93‑1 (MQ=255)
ttCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGa > 1:5568680/1‑93 (MQ=255)
ttCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGa < 1:3535649/93‑1 (MQ=255)
tcAATACTCCGGCGACTGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGTTATTGCCCGCCGGacac < 1:5478626/93‑1 (MQ=255)
tcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGacac < 2:671761/93‑1 (MQ=255)
tcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGacac < 1:5581110/93‑1 (MQ=255)
tcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGacac < 1:2935449/93‑1 (MQ=255)
tcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGacac < 1:1718752/93‑1 (MQ=255)
tcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGacac < 1:5198606/93‑1 (MQ=255)
taatCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGaa > 2:548201/1‑93 (MQ=255)
aatCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAAt < 1:454400/93‑1 (MQ=255)
atCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATg < 1:1848373/93‑1 (MQ=255)
tCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATgg > 1:5593927/1‑93 (MQ=255)
ccGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGc < 2:2392109/93‑1 (MQ=255)
gCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTa > 1:335898/1‑93 (MQ=255)
aTGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTc > 2:4330482/1‑93 (MQ=255)
gATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGt > 2:3460755/1‑93 (MQ=255)
gATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGt < 1:5501955/93‑1 (MQ=255)
gATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGt > 2:1982944/1‑93 (MQ=255)
tATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTaaa > 2:4933736/1‑93 (MQ=255)
aTGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTaaaa < 2:5357176/93‑1 (MQ=255)
aTGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTaaaa < 1:1653989/93‑1 (MQ=255)
aTGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTaaaa < 2:1837011/93‑1 (MQ=255)
aTGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTaaaa > 2:2344324/1‑93 (MQ=255)
gTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAAcc < 2:1157763/93‑1 (MQ=255)
gTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAAcc > 1:5096728/1‑93 (MQ=255)
ccGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAAcccc < 2:3210271/93‑1 (MQ=255)
ccGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAAcccc < 1:3578271/93‑1 (MQ=255)
ccGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAAcccc < 1:308196/93‑1 (MQ=255)
ccGTACCTTCTTCCGTGGCGTTAATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAAcccc < 2:1478208/93‑1 (MQ=255)
cGTACCTTTTTTCGTGGCGTTCATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCt < 1:1501387/93‑1 (MQ=255)
cGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCt > 1:4490785/1‑93 (MQ=255)
cGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCt > 2:2179926/1‑93 (MQ=255)
cGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCt < 1:6027584/93‑1 (MQ=255)
gTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTg < 1:4874742/93‑1 (MQ=255)
gTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTg < 1:4094425/93‑1 (MQ=255)
gTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTg > 1:5939252/1‑93 (MQ=255)
gTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTg > 2:143222/1‑93 (MQ=255)
tACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTgg > 2:6008683/1‑93 (MQ=255)
aCCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGc > 2:5619485/1‑93 (MQ=255)
aCCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGc > 2:857683/1‑93 (MQ=255)
aCCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGc < 1:2205850/93‑1 (MQ=255)
ccTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCt < 2:1915973/93‑1 (MQ=255)
cttcttCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCtt < 1:3153147/93‑1 (MQ=255)
ttcttcCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTc > 2:336346/1‑93 (MQ=255)
ttcttcCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTc > 1:2601923/1‑93 (MQ=255)
ttcttcCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTc > 2:6041211/1‑93 (MQ=255)
tcttcCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAACACCCCTGGCTTCg > 2:4019390/1‑93 (MQ=255)
tcttcCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCg > 2:2718650/1‑93 (MQ=255)
cttcCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCgg > 1:2005587/1‑93 (MQ=255)
cttcCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCgg > 2:1341950/1‑93 (MQ=255)
cGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCa < 2:3483993/93‑1 (MQ=255)
cGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCa < 1:1742121/93‑1 (MQ=255)
cGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCa > 2:3331777/1‑93 (MQ=255)
tGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACg > 2:2972602/1‑93 (MQ=255)
tGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACg > 2:5429129/1‑93 (MQ=255)
ggCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGt < 2:5899119/93‑1 (MQ=255)
gCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGtt > 1:3806770/1‑93 (MQ=255)
gCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGtt > 2:4735865/1‑93 (MQ=255)
gCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGtt < 2:1642027/93‑1 (MQ=255)
gCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGtt < 2:4117524/93‑1 (MQ=255)
cGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTc < 2:2784758/93‑1 (MQ=255)
gTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCg > 1:2656204/1‑93 (MQ=255)
gTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCg > 1:139547/1‑93 (MQ=255)
ttGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCgg > 1:4205918/1‑93 (MQ=255)
ttGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCgg > 2:4559442/1‑93 (MQ=255)
tGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGc < 1:1140357/93‑1 (MQ=255)
tatTAGCCTGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACt > 1:5635520/1‑93 (MQ=255)
tatTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACt > 2:728791/1‑93 (MQ=255)
tatTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACt < 1:1200181/93‑1 (MQ=255)
tAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGaa < 2:2907991/93‑1 (MQ=255)
|
TGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGAA > NC_000913/2803558‑2803737
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGAAATTA > NC_000913/2803555‑2803741
|
TGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGC < SRR4302532.4143371/94‑1 (MQ=60)
GTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCA > SRR4302532.2779225/1‑94 (MQ=60)
GAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGG < SRR4302532.1141260/94‑1 (MQ=60)
AAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGT < SRR4302532.6210803/94‑1 (MQ=60)
AGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTA > SRR4302532.4390084/1‑94 (MQ=60)
ATGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTAT < SRR4302532.5784514/94‑1 (MQ=60)
GTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCA > SRR4302532.2811188/1‑94 (MQ=60)
GTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCA < SRR4302532.4409778/94‑1 (MQ=60)
GACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAG < SRR4302532.1849422/94‑1 (MQ=60)
ACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGT < SRR4302532.3411698/94‑1 (MQ=60)
CAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTG < SRR4302532.4099679/94‑1 (MQ=60)
CAGGTCGGCACACCGGATGAAATCCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTG < SRR4302532.2240187/94‑1 (MQ=60)
CAGCTCGGCAGTCCGGATGAAATTATCAAGAATCCGGCGACGGATACTGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGTTATTCAGCG < SRR4302532.5492816/94‑1 (MQ=34)
AGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGC < SRR4302532.5994873/94‑1 (MQ=60)
GGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCG > SRR4302532.4993119/1‑94 (MQ=60)
GGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCG < SRR4302532.4275703/94‑1 (MQ=60)
GGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCG < SRR4302532.3902309/94‑1 (MQ=60)
TCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAA < SRR4302532.1299619/94‑1 (MQ=60)
GGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAG < SRR4302532.5087843/94‑1 (MQ=60)
CACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGAT < SRR4302532.3409257/94‑1 (MQ=60)
CAAACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGGCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGAT > SRR4302532.2077496/1‑94 (MQ=60)
ACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATA < SRR4302532.5320050/94‑1 (MQ=60)
ACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATT < SRR4302532.2989914/94‑1 (MQ=60)
CCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTG < SRR4302532.811724/94‑1 (MQ=60)
CCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTG < SRR4302532.3983453/94‑1 (MQ=60)
CCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTG < SRR4302532.1934171/94‑1 (MQ=60)
CCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTG < SRR4302532.4809220/94‑1 (MQ=60)
CGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGTGAAAGATATTGC > SRR4302532.6127867/1‑94 (MQ=60)
CGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGC > SRR4302532.1673963/1‑94 (MQ=60)
GGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCC < SRR4302532.1109472/94‑1 (MQ=60)
GATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCC < SRR4302532.1938654/94‑1 (MQ=60)
GATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCC > SRR4302532.1885884/1‑94 (MQ=60)
GATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCC < SRR4302532.4696518/94‑1 (MQ=60)
GATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCC < SRR4302532.5240191/94‑1 (MQ=60)
ATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCG < SRR4302532.5757236/94‑1 (MQ=60)
ATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCG > SRR4302532.3897546/1‑94 (MQ=60)
ATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCG > SRR4302532.3851657/1‑94 (MQ=60)
ATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCG < SRR4302532.3664476/94‑1 (MQ=60)
ATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCG > SRR4302532.3830479/1‑94 (MQ=60)
TGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGC > SRR4302532.5909728/1‑94 (MQ=60)
AAAATTGTCAATAATCCGTCGAATGATTATGTCCGTACCTTCTTCCGGGCCGTTGATAATAGCCAGGTATTCAGTGCGAAAGATATTGCCCTCC < SRR4302532.1749564/94‑1 (MQ=60)
AATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGG < SRR4302532.5271812/94‑1 (MQ=60)
ATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGA > SRR4302532.5762058/1‑94 (MQ=60)
ATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGA > SRR4302532.5762057/1‑94 (MQ=60)
TTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGAC < SRR4302532.3653950/94‑1 (MQ=60)
TCAATACTCCGGCGACTGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGTTATTGCCCGCCGGACACC < SRR4302532.5668593/94‑1 (MQ=60)
TCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACC < SRR4302532.1197969/94‑1 (MQ=60)
TCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACC < SRR4302532.5377844/94‑1 (MQ=60)
TCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACC < SRR4302532.5774868/94‑1 (MQ=60)
TCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACC < SRR4302532.1776664/94‑1 (MQ=60)
TCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACC < SRR4302532.3032985/94‑1 (MQ=60)
AATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGA > SRR4302532.4321892/1‑94 (MQ=60)
AATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGA > SRR4302532.1898298/1‑94 (MQ=60)
ATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAA > SRR4302532.4458327/1‑94 (MQ=60)
ATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAA > SRR4302532.1384393/1‑94 (MQ=60)
TAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAAT < SRR4302532.1765307/94‑1 (MQ=60)
TAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAAT < SRR4302532.2046383/94‑1 (MQ=60)
TAATCCGGCGAATGATTATGTCCGTACCTTCATCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGTTATTGCCCGCCGGACACCGAAT < SRR4302532.2192255/94‑1 (MQ=60)
AATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATG < SRR4302532.470210/94‑1 (MQ=60)
AATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATG < SRR4302532.5034800/94‑1 (MQ=60)
ATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGG > SRR4302532.5788108/1‑94 (MQ=60)
ATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGG < SRR4302532.1909737/94‑1 (MQ=60)
TCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGC < SRR4302532.5076213/94‑1 (MQ=60)
ACGGCGAATGATTATGTCCGAAACCTCTTCCTTGGCGTTGATCTTAGCCAGGTATTCAGTGCGAAAGATATTGCACGCCGGACACCGAATGGCT > SRR4302532.2052279/1‑94 (MQ=60)
CGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTT < SRR4302532.4267514/94‑1 (MQ=60)
GGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTA > SRR4302532.5392420/1‑94 (MQ=60)
GGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTA > SRR4302532.347536/1‑94 (MQ=60)
CGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAAT > SRR4302532.2928899/1‑94 (MQ=60)
CGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAAT > SRR4302532.1544404/1‑94 (MQ=60)
GAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATT > SRR4302532.3785985/1‑94 (MQ=60)
GATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTA < SRR4302532.3008085/94‑1 (MQ=60)
GATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTA < SRR4302532.5692800/94‑1 (MQ=60)
TATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAA > SRR4302532.3186946/1‑94 (MQ=60)
ATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAAC < SRR4302532.1710050/94‑1 (MQ=60)
TGTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACC > SRR4302532.5271976/1‑94 (MQ=60)
GTCCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCC > SRR4302532.3264416/1‑94 (MQ=60)
CCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCT < SRR4302532.318879/94‑1 (MQ=60)
CCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCT > SRR4302532.4644078/1‑94 (MQ=60)
CCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCT < SRR4302532.1784330/94‑1 (MQ=60)
CCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCT < SRR4302532.3697988/94‑1 (MQ=60)
CCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACACCT > SRR4302532.3081544/1‑94 (MQ=60)
CCGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGGATTCAGGGCGAAAGATATTGCGCGCCGGGCACCGAATGGCTTAATTGGTACAACCCCT > SRR4302532.2641056/1‑94 (MQ=60)
CGTACCTTTTTTCGTGGCGTTCATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTG < SRR4302532.1552049/94‑1 (MQ=60)
CGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTG < SRR4302532.6235766/94‑1 (MQ=60)
CGTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTG > SRR4302532.6144773/1‑94 (MQ=60)
GTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGG < SRR4302532.4231882/94‑1 (MQ=60)
GTACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGG < SRR4302532.5042322/94‑1 (MQ=60)
ACCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCT < SRR4302532.2279207/94‑1 (MQ=60)
CCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTT > SRR4302532.980491/1‑94 (MQ=60)
CCTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTT < SRR4302532.751277/94‑1 (MQ=60)
CTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTC < SRR4302532.3257780/94‑1 (MQ=60)
CTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTC > SRR4302532.2688926/1‑94 (MQ=60)
CTTCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTC > SRR4302532.1248566/1‑94 (MQ=60)
TTCTGCCGTGGCGTTTGTATTAGCCAGGTATTCAGTGCGAAAGAGTTTGCCCGCCGGACCCCGAATGGCTTAATTCGTTAAACCCCTTGCTTCG < SRR4302532.1653461/94‑1 (MQ=53)
TCTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGG > SRR4302532.2072463/1‑94 (MQ=60)
CTTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGC < SRR4302532.3498548/94‑1 (MQ=60)
TTCCGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCC > SRR4302532.3935871/1‑94 (MQ=60)
CGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCAC < SRR4302532.1800738/94‑1 (MQ=60)
CGTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCAC < SRR4302532.2363315/94‑1 (MQ=60)
GTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATACGTAAAACCCCTGGCTTCGGCCCACG < SRR4302532.5686357/94‑1 (MQ=60)
CTGGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACG < SRR4302532.5791378/94‑1 (MQ=60)
GGCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTT > SRR4302532.3935280/1‑94 (MQ=60)
GCGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTC < SRR4302532.3883679/94‑1 (MQ=60)
CGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCG > SRR4302532.144263/1‑94 (MQ=60)
CGTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCG > SRR4302532.2745358/1‑94 (MQ=60)
GTTGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGG > SRR4302532.4347106/1‑94 (MQ=60)
GTTGATATTAGCCAGGTATGCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGG < SRR4302532.2723653/94‑1 (MQ=60)
TGATATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCA < SRR4302532.1178376/94‑1 (MQ=60)
ATATTAGCCTGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACT > SRR4302532.5831270/1‑94 (MQ=60)
TATTAGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTG < SRR4302532.1240328/94‑1 (MQ=60)
AGCCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGAAAT < SRR4302532.5054370/94‑1 (MQ=60)
CCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGAAATTA > SRR4302532.725376/1‑94 (MQ=60)
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TGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGAAATTA > NC_000913/2803555‑2803741
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
