Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,123,585 |
+G |
coding (953/2286 nt) |
glcF ← |
glycolate oxidase iron‑sulfur subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,123,582 | 1 | . | G | 99.5%
| 667.9
/ ‑3.7
| 188 | coding (956/2286 nt) | glcF | glycolate oxidase iron‑sulfur subunit |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (105/82); total (106/82) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.64e-01 |
Only 100 of 211 total aligned reads displayed.
AGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑GGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > NC_000913/3123490‑3123669
|
aGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGc < 1:3615176/93‑1 (MQ=255)
aGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGc < 2:667436/93‑1 (MQ=255)
aGTGCCGCGTACATGCGACCGGGGTTAAACGCGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGc < 2:5834027/93‑1 (MQ=255)
gTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g < 2:3663279/93‑1 (MQ=255)
ttCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑gg > 1:2998600/1‑93 (MQ=255)
ttCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑gg < 2:1821578/93‑1 (MQ=255)
ttCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑gg > 1:1498516/1‑93 (MQ=255)
tCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑ggg < 2:6071045/93‑1 (MQ=255)
aCATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGc < 2:2619234/93‑1 (MQ=255)
cATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGcc > 1:2286908/1‑93 (MQ=255)
tGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGccac > 2:4125909/1‑93 (MQ=255)
gCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGATGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGccacc > 1:3757286/1‑93 (MQ=255)
cGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGccacca < 1:1159847/93‑1 (MQ=255)
aCCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCAtc < 2:3352036/93‑1 (MQ=255)
ccGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCAtct > 1:1512898/1‑93 (MQ=255)
ccGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCAtct < 1:2242639/93‑1 (MQ=255)
cGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCAtctc < 1:5903428/93‑1 (MQ=255)
ggggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTcc > 1:3182100/1‑93 (MQ=255)
ggggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTcc < 1:4139643/93‑1 (MQ=255)
ggggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTcc < 2:618758/93‑1 (MQ=255)
gggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCg < 1:3353701/93‑1 (MQ=255)
gggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCg < 1:2369289/93‑1 (MQ=255)
tAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCAc > 2:3541856/1‑93 (MQ=255)
tAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCAc < 2:1948756/93‑1 (MQ=255)
acacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTaa > 1:543781/1‑93 (MQ=255)
acacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTaa < 1:2914324/93‑1 (MQ=255)
acacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTaa > 2:6088967/1‑93 (MQ=255)
cacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTaaa < 1:5783882/93‑1 (MQ=255)
cacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTaaa < 2:4834691/93‑1 (MQ=255)
gccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCTTCTCCGGCACTAAAGCg > 2:5496578/1‑93 (MQ=255)
gccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCg > 1:4013644/1‑93 (MQ=255)
gccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCg < 2:4499165/93‑1 (MQ=255)
ccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCgg < 1:284634/93‑1 (MQ=255)
ccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCgg < 1:3462464/93‑1 (MQ=255)
ccgaAAGGGTCGAGCTGCTGATTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCgg < 1:420240/93‑1 (MQ=255)
cgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCggg > 2:5511951/1‑93 (MQ=255)
gcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCgggg > 1:4946370/1‑92 (MQ=255)
gcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGt < 2:2767262/93‑1 (MQ=255)
gcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGt < 1:3554725/93‑1 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTc < 1:5114672/93‑1 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTc > 2:5202651/1‑93 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCCGGTc > 1:731944/1‑93 (MQ=255)
aGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGc > 1:2301568/1‑93 (MQ=255)
gggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCa < 2:540347/93‑1 (MQ=255)
gAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAcc < 1:2606190/93‑1 (MQ=255)
aGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCg > 1:4105993/1‑93 (MQ=255)
gctgctGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGc > 2:3928916/1‑93 (MQ=255)
gctgctGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGc > 2:1139140/1‑93 (MQ=255)
gctgctGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGc > 1:4851448/1‑93 (MQ=255)
gctgctGTTTAAGCTGCAGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGTGGGTCGCATGACCGc > 1:5479322/1‑93 (MQ=255)
ctgctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGcc > 1:5851902/1‑93 (MQ=255)
tgctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCa > 2:537573/1‑93 (MQ=255)
gctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAg > 2:2949400/1‑93 (MQ=255)
tgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCg > 2:4899500/1‑93 (MQ=255)
gTTTAAGTTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt < 2:2234759/93‑1 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 1:603716/1‑93 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt < 1:1843306/93‑1 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 2:2192391/1‑93 (MQ=255)
gTTTAAGCTGCTGGGGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 1:1175585/1‑93 (MQ=255)
tttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGtt > 2:4060915/1‑93 (MQ=255)
ttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTg > 1:1329376/1‑93 (MQ=255)
ttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTg < 1:4057693/93‑1 (MQ=255)
tAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGc < 2:3108852/93‑1 (MQ=255)
tAAACTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGc < 2:4163579/93‑1 (MQ=255)
gctgctGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCggg < 1:499786/93‑1 (MQ=255)
gctgctGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCggg < 1:1034907/93‑1 (MQ=255)
gctgctGGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCggg > 2:4810235/1‑93 (MQ=255)
ctgGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgat > 1:1708676/1‑93 (MQ=255)
ctgGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgat < 2:4272320/93‑1 (MQ=255)
tgGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatg < 2:4694384/93‑1 (MQ=255)
tgGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatg > 1:2328865/1‑93 (MQ=255)
tgGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatg > 1:5237911/1‑93 (MQ=255)
tgGTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatg > 1:5353780/1‑93 (MQ=255)
gTGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcg > 2:734319/1‑93 (MQ=255)
tGATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcga > 2:5223856/1‑93 (MQ=255)
ggATAGCGTAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcga < 2:5720849/92‑1 (MQ=255)
gATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcgat > 2:916605/1‑93 (MQ=255)
gATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcgat > 2:4206177/1‑93 (MQ=255)
gATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcgat > 2:2543419/1‑93 (MQ=255)
gATAGCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTAGCATGACCGCCAGCGTTGCGGgcgatgcgat < 2:2599459/93‑1 (MQ=255)
gCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAt < 2:3388313/93‑1 (MQ=255)
gCGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAt < 1:4612831/93‑1 (MQ=255)
cGGAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAtt > 1:3292474/1‑93 (MQ=255)
ggAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGGttt > 1:3927613/1‑93 (MQ=255)
ggAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAttt < 1:1948226/93‑1 (MQ=255)
gAATAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTg > 1:5181476/1‑93 (MQ=255)
aaTAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGa < 2:1573664/93‑1 (MQ=255)
tAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAtt > 2:2955895/1‑93 (MQ=255)
tAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAtt > 2:5921034/1‑93 (MQ=255)
tAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAtt < 1:868294/93‑1 (MQ=255)
tAAAGGAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAtt > 2:158347/1‑93 (MQ=255)
ggAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTcc > 1:4460299/1‑93 (MQ=255)
gAGCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCt < 1:5838919/93‑1 (MQ=255)
gCCGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCg > 1:4779883/1‑93 (MQ=255)
ctaTAGCGGGGCAAAGCCACCATCACCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGc < 1:5745439/91‑1 (MQ=255)
cGATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGc > 1:1567642/1‑93 (MQ=255)
gATAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCt < 1:3881496/93‑1 (MQ=255)
aTAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTg > 2:229652/1‑93 (MQ=255)
aTAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTg < 1:4712480/93‑1 (MQ=255)
aTAGCGGGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTg > 1:946649/1‑93 (MQ=255)
|
AGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑GGGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > NC_000913/3123490‑3123669
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GC‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA > NC_000913/3123492‑3123678
|
TTCCGCGTACATGCGACCGGGCTTAACCACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GC‑G‑GG < SRR4302532.5652115/94‑1 (MQ=60)
CGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GC‑G‑GGgca < SRR4302532.1200992/94‑4 (MQ=60)
CGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GC‑G‑GGgca > SRR4302532.4777820/1‑91 (MQ=60)
CGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCAGATA‑GC‑G‑GGgca > SRR4302532.1561800/1‑91 (MQ=60)
CGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAA > SRR4302532.972360/1‑94 (MQ=60)
ACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCC > SRR4302532.2362813/1‑94 (MQ=60)
CATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCA > SRR4302532.5004117/1‑94 (MQ=60)
CATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCA > SRR4302532.1887766/1‑94 (MQ=60)
TGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGATGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACC > SRR4302532.3883678/1‑94 (MQ=60)
GCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCA < SRR4302532.296706/94‑1 (MQ=60)
GCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCA < SRR4302532.5594211/94‑1 (MQ=60)
CGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCAT < SRR4302532.1198600/94‑1 (MQ=60)
ACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCT > SRR4302532.1563991/1‑94 (MQ=60)
ACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCT < SRR4302532.780465/94‑1 (MQ=60)
CCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTC < SRR4302532.2317062/94‑1 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTTCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCC > SRR4302532.3443850/1‑94 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCC > SRR4302532.3287776/1‑94 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCC < SRR4302532.6107850/94‑1 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCGCC > SRR4302532.3287591/1‑94 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCCCC > SRR4302532.6089675/1‑94 (MQ=60)
GGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCG < SRR4302532.4278516/94‑1 (MQ=60)
GGGTTAAACACGCCGCAGGGGTGGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGG < SRR4302532.2438342/94‑1 (MQ=60)
GGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGG > SRR4302532.502398/1‑94 (MQ=60)
GGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGG < SRR4302532.3465665/94‑1 (MQ=60)
GGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGG < SRR4302532.2448300/94‑1 (MQ=60)
GGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGC > SRR4302532.3646476/1‑94 (MQ=60)
GTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCA < SRR4302532.5887852/94‑1 (MQ=60)
TTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCAC > SRR4302532.3542162/1‑94 (MQ=60)
TTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCAC > SRR4302532.6012115/1‑94 (MQ=60)
AACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAA > SRR4302532.562730/1‑94 (MQ=60)
ACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAA < SRR4302532.3011456/94‑1 (MQ=60)
CACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAG < SRR4302532.5985044/94‑1 (MQ=60)
CGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCG > SRR4302532.4148884/1‑94 (MQ=60)
CGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGCGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGCCACTAAAGCG > SRR4302532.778097/1‑94 (MQ=60)
CCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGG < SRR4302532.3578428/94‑1 (MQ=60)
CCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGG < SRR4302532.294467/94‑1 (MQ=60)
CCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGG < SRR4302532.940046/94‑1 (MQ=60)
CCGAAAGGGTCGAGCTGCTGATTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGG < SRR4302532.434819/94‑1 (MQ=60)
CGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGT < SRR4302532.1953377/94‑1 (MQ=60)
CGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGT > SRR4302532.2706606/1‑94 (MQ=60)
CGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGG > SRR4302532.5116142/1‑94 (MQ=60)
GCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTC < SRR4302532.3673661/94‑1 (MQ=60)
GCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCCGGTC > SRR4302532.756888/1‑94 (MQ=60)
aagagaTCGAGTTGCTGTTTAAGCTGCTGGTGATAGCGAAATAAAGGAGCCTATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCG < SRR4302532.3840844/88‑1 (MQ=60)
CAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCG < SRR4302532.5290550/94‑1 (MQ=60)
CAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCG < SRR4302532.605503/94‑1 (MQ=60)
AAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGC > SRR4302532.2378062/1‑94 (MQ=60)
ggggaatgctgtgaattaagttaCTGGTGATAGCGGAATTAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGAACTAAAGGGGGTCCCAT < SRR4302532.3075305/71‑1 (MQ=54)
GGTTCGAGCTGCTGTTTAAGCGGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAT < SRR4302532.388037/94‑1 (MQ=60)
TCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAC < SRR4302532.4069528/94‑1 (MQ=60)
TCGAGATGCTGTTTAAGCTGCGGGTCATAGCGGAATAAAGGAGCAGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAC < SRR4302532.4069529/94‑1 (MQ=60)
GAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCG > SRR4302532.4243814/1‑94 (MQ=60)
GAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCG < SRR4302532.3045778/94‑1 (MQ=60)
GAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCG < SRR4302532.2693353/94‑1 (MQ=60)
GAGCTGCTGTTTAAGCTGCTGGTGAAAGCGCAATAAAAGAGCAGCAA‑GC‑GCGGCAAAGCCACAATCTCCGGCAATAAAGAGGCTTGCATGACCG > SRR4302532.6242527/1‑94 (MQ=18)
AGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGC > SRR4302532.5018400/1‑94 (MQ=60)
AGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGC > SRR4302532.5536561/1‑94 (MQ=60)
AGCTGCTGTTTAAGCTGCAGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGTGGGTCGCATGACCGC > SRR4302532.5669299/1‑94 (MQ=60)
GCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCC > SRR4302532.6054890/1‑94 (MQ=60)
CTGCTGTTTAAGTTGGGGGGGATAGCGGAACAAAGGAGCGGATAGGG‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCA < SRR4302532.1348987/94‑1 (MQ=57)
CTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCA > SRR4302532.4021086/1‑94 (MQ=60)
CTGCGGTTTAAGCTGCTGGGGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCA < SRR4302532.636478/94‑1 (MQ=60)
TGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAG > SRR4302532.5290597/1‑94 (MQ=60)
TGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAG > SRR4302532.1649158/1‑94 (MQ=60)
GGCTGTTTAAGGTGCTGGTGATAGCGGAATAAAGGAGCCAATC‑GCGG‑GGCAAAGCAACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAG < SRR4302532.2918268/94‑1 (MQ=60)
GCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGC > SRR4302532.5673868/1‑94 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302532.4274643/1‑94 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302532.624811/1‑94 (MQ=60)
TGTTTAAGCTGCTGGGGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302532.1214861/1‑94 (MQ=60)
GTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTT < SRR4302532.1904524/94‑1 (MQ=60)
TTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTG > SRR4302532.1373803/1‑94 (MQ=60)
TTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGC < SRR4302532.4194118/94‑1 (MQ=60)
TAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCG > SRR4302532.2376544/1‑94 (MQ=60)
AAGCTGCTGGTGTTAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGG < SRR4302532.2679256/94‑1 (MQ=60)
AGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGG > SRR4302532.5154799/1‑94 (MQ=60)
GCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGC < SRR4302532.1069851/94‑1 (MQ=60)
GCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGC < SRR4302532.517267/94‑1 (MQ=60)
CTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCG > SRR4302532.160801/1‑94 (MQ=60)
CTGCTGGCGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCACAGCCACCATCTCCGGCACTAAAGCGGGCAGCATGACCGCCACCGTTGGGGGTG > SRR4302532.4150158/1‑94 (MQ=60)
GCTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGAT > SRR4302532.1766277/1‑94 (MQ=60)
CTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG > SRR4302532.5539452/1‑94 (MQ=60)
CTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG > SRR4302532.4730233/1‑94 (MQ=60)
CTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG > SRR4302532.5418507/1‑94 (MQ=60)
CTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG > SRR4302532.5376490/1‑94 (MQ=60)
CTGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG > SRR4302532.2406430/1‑94 (MQ=60)
TGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGC < SRR4302532.3730700/94‑1 (MQ=60)
TGGTGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGC > SRR4302532.4296751/1‑94 (MQ=60)
TGATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGAT > SRR4302532.3151748/1‑94 (MQ=60)
GATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATG < SRR4302532.4216678/94‑1 (MQ=60)
ATAGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGG > SRR4302532.5968987/1‑94 (MQ=60)
AGCGGAATAAGGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT < SRR4302532.496501/94‑1 (MQ=60)
AGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT < SRR4302532.3971853/94‑1 (MQ=60)
AGCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT < SRR4302532.3337443/94‑1 (MQ=60)
GCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATT < SRR4302532.4770121/94‑1 (MQ=60)
GCGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATT > SRR4302532.3402027/1‑94 (MQ=60)
CGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGGTTT > SRR4302532.4059944/1‑94 (MQ=60)
CGGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTT < SRR4302532.2406087/94‑1 (MQ=60)
GGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG > SRR4302532.4942716/1‑94 (MQ=60)
GGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG > SRR4302532.5359945/1‑94 (MQ=60)
GGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG < SRR4302532.5208476/94‑1 (MQ=60)
GGAATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG < SRR4302532.2012992/94‑1 (MQ=60)
AATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAT < SRR4302532.2079537/94‑1 (MQ=60)
ATAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATT > SRR4302532.1276119/1‑94 (MQ=60)
TAAAGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTG < SRR4302532.898051/94‑1 (MQ=60)
AGGAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCC > SRR4302532.4612349/1‑94 (MQ=60)
GAGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTC < SRR4302532.6041576/94‑1 (MQ=60)
AGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCG > SRR4302532.4944489/1‑94 (MQ=60)
AGCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCG < SRR4302532.1403354/94‑1 (MQ=60)
GCCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGG < SRR4302532.4420841/94‑1 (MQ=60)
CCGATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGC > SRR4302532.1620692/1‑94 (MQ=60)
ctatagcgG‑GGCAAAGCCACCATCACCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCT < SRR4302532.5945442/86‑1 (MQ=60)
GATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > SRR4302532.979045/1‑94 (MQ=60)
GATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > SRR4302532.2263676/1‑94 (MQ=60)
GATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG < SRR4302532.4012511/94‑1 (MQ=60)
ATA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGT < SRR4302532.4873274/94‑1 (MQ=60)
TA‑GCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTC < SRR4302532.6351011/94‑1 (MQ=60)
A‑GCGG‑GGCAAAGCCACCACCTCCGGCCCTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCG < SRR4302532.5530175/94‑1 (MQ=60)
cgG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCCGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGAT < SRR4302532.325901/92‑1 (MQ=60)
cgG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGAT < SRR4302532.6056421/92‑1 (MQ=60)
cgG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGAT < SRR4302532.3380778/92‑1 (MQ=60)
G‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTagctt > SRR4302532.547614/1‑89 (MQ=60)
G‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATT > SRR4302532.4726993/1‑94 (MQ=60)
G‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTAGATT > SRR4302532.1426345/1‑94 (MQ=60)
G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTT < SRR4302532.1665467/94‑1 (MQ=60)
G‑CGCAAAACCACCATCTCCGGCAGTAAAGCGGGTCGCAGATCCGCCAGCGTTGCGGGGGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTT < SRR4302532.5471448/94‑1 (MQ=60)
GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTC < SRR4302532.2296719/94‑1 (MQ=60)
GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA < SRR4302532.5909578/94‑1 (MQ=60)
GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA < SRR4302532.3462491/94‑1 (MQ=60)
|
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATA‑GC‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA > NC_000913/3123492‑3123678
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
