Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,222,944 |
4 bp→AGCA |
coding (2671‑2674/3093 nt) |
b3076 → |
evolved beta‑D‑galactosidase alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,222,944 | 0 | C | A | 100.0%
| 755.8
/ NA
| 204 | Q891S (CAA→AGC) | b3076 | evolved beta‑D‑galactosidase alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (97/107); total (97/107) |
| * | NC_000913 | 3,222,945 | 0 | A | G | 100.0%
| 724.2
/ NA
| 204 | Q891S (CAA→AGC) | b3076 | evolved beta‑D‑galactosidase alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (97/107); total (97/107) |
| * | NC_000913 | 3,222,946 | 0 | A | C | 100.0%
| 718.9
/ NA
| 204 | Q891S (CAA→AGC) | b3076 | evolved beta‑D‑galactosidase alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (97/107); total (97/107) |
| * | NC_000913 | 3,222,947 | 0 | G | A | 99.5%
| 727.9
/ NA
| 204 | A892T (GCC→ACC) | b3076 | evolved beta‑D‑galactosidase alpha subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (97/106); minor base C (0/1); total (97/107) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 207 total aligned reads displayed.
GATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCCAAGCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAC > NC_000913/3222863‑3223026
||||
gATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGAt > 1:4646550/1‑93 (MQ=255)
aTCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATg > 2:2850655/1‑93 (MQ=255)
aTCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATg > 1:2605970/1‑93 (MQ=255)
tCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGc < 2:334495/93‑1 (MQ=255)
tCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGc > 1:5334173/1‑93 (MQ=255)
aGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCa > 1:4974640/1‑93 (MQ=255)
ggTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCAt > 1:308324/1‑93 (MQ=255)
gTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATg < 2:2076901/93‑1 (MQ=255)
gTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATg < 1:6047166/93‑1 (MQ=255)
gTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATg < 1:5449049/93‑1 (MQ=255)
gTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATg < 2:4014012/93‑1 (MQ=255)
tGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGt > 2:1184744/1‑93 (MQ=255)
tGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGt < 1:2884394/93‑1 (MQ=255)
ggCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGtt < 1:3248001/93‑1 (MQ=255)
ggCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGtt < 1:2081854/93‑1 (MQ=255)
ggCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGtt > 2:2161698/1‑93 (MQ=255)
ggCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGtt > 2:6043272/1‑93 (MQ=255)
gCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTc > 1:5798964/1‑93 (MQ=255)
gCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTc > 1:3984378/1‑93 (MQ=255)
gTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCga < 2:1714320/93‑1 (MQ=255)
tATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCgag > 2:3046769/1‑93 (MQ=255)
tATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCgag > 2:2470344/1‑93 (MQ=255)
ttACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGaa < 2:272656/93‑1 (MQ=255)
tACGGTCGTGGACCGGGCGAAACCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAAc < 1:4586406/93‑1 (MQ=255)
gTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATc > 1:5164859/1‑93 (MQ=255)
tCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATcc > 1:3012627/1‑93 (MQ=255)
tCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATcc < 2:5138608/93‑1 (MQ=255)
gTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCt < 1:4692295/93‑1 (MQ=255)
gTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCt > 2:5835709/1‑93 (MQ=255)
tGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCtt < 2:3692754/93‑1 (MQ=255)
tGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCtt < 1:5923377/93‑1 (MQ=255)
tGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCtt > 1:6017354/1‑93 (MQ=255)
ggACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTc < 1:857974/93‑1 (MQ=255)
ggACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTc < 1:110157/93‑1 (MQ=255)
gACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTcc < 2:5228577/93‑1 (MQ=255)
gACCGGGCGAAAACAACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTcc < 1:2708866/93‑1 (MQ=255)
aCCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTccc > 1:4143366/1‑93 (MQ=255)
cGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGc > 1:1998186/1‑93 (MQ=255)
cGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGc < 2:4792218/93‑1 (MQ=255)
cGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGCCGATGCCATGTTCGTGAACTATACCTTCCCGc > 1:3376659/1‑93 (MQ=255)
gggCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCa < 1:1026372/93‑1 (MQ=255)
ggCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAg > 1:44040/1‑93 (MQ=255)
gAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGaac > 2:2266070/1‑93 (MQ=255)
aaaaCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGaaca < 1:1393049/93‑1 (MQ=255)
aaaCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGaacaa < 1:4324861/93‑1 (MQ=255)
aaCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGaacaac < 2:3644707/93‑1 (MQ=255)
aaCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGaacaac < 2:4167183/93‑1 (MQ=255)
aaCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGaacaac > 1:5404744/1‑93 (MQ=255)
aCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACg > 2:613898/1‑93 (MQ=255)
aCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACg < 1:5880157/93‑1 (MQ=255)
cTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACgg > 1:946770/1‑93 (MQ=255)
tACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGt > 1:6115483/1‑93 (MQ=255)
tACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGt < 2:4232421/93‑1 (MQ=255)
tACCCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGt < 1:2371839/93‑1 (MQ=255)
cGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTaa < 2:5899822/93‑1 (MQ=255)
cGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTaa < 2:1589720/93‑1 (MQ=255)
cccGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAAc < 1:1936076/92‑1 (MQ=255)
ccGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAAcc > 1:2193138/1‑93 (MQ=255)
ccGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAAcc < 1:4218606/93‑1 (MQ=255)
cGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCg < 1:2840564/93‑1 (MQ=255)
gACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGt > 2:3485818/1‑93 (MQ=255)
aCAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTc < 2:5697665/93‑1 (MQ=255)
aCAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTc < 1:2487478/93‑1 (MQ=255)
gccagcGGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCCGAACAACGGTAACCGTCAGc > 1:917623/1‑93 (MQ=255)
gccagcAGGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGc > 1:3539201/1‑93 (MQ=255)
cagcagGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAt > 2:4252966/1‑93 (MQ=255)
agcagGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATg > 2:2410901/1‑93 (MQ=255)
agcagGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCCTCCCGCAGAACAACGGTAACCGCCAGCATg > 1:3629844/1‑93 (MQ=255)
cagGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTc < 2:4611739/93‑1 (MQ=255)
agGCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTcc > 2:2606649/1‑93 (MQ=255)
ggttAACAACATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCg < 2:2451475/90‑1 (MQ=255)
ggCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCCGCGTgcgcg > 2:563222/1‑89 (MQ=255)
ggCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCg > 2:5392878/1‑93 (MQ=255)
ggCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCg > 2:129570/1‑93 (MQ=255)
ggCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCg > 2:1738732/1‑93 (MQ=255)
ggCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCg > 1:1328246/1‑93 (MQ=255)
gCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGc > 1:1545391/1‑93 (MQ=255)
gCTAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGc > 2:3299174/1‑93 (MQ=255)
tAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTg > 1:2304366/1‑93 (MQ=255)
tAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTg > 1:4543457/1‑93 (MQ=255)
tAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTg < 2:5439590/93‑1 (MQ=255)
tAACATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCCTCAGCATGTCCGCTg > 1:4447527/1‑93 (MQ=255)
aaCATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTgg > 1:373191/1‑93 (MQ=255)
aaCATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTgg > 2:3897139/1‑93 (MQ=255)
aaCATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTgg > 1:4731914/1‑93 (MQ=255)
aCATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGa < 2:3545493/93‑1 (MQ=255)
aCATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGa < 2:4863870/93‑1 (MQ=255)
aCATCATCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGa < 2:1493644/93‑1 (MQ=255)
catcatCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGAc < 1:383291/93‑1 (MQ=255)
catcatCGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGAc < 1:1760985/93‑1 (MQ=255)
atcatcGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACg < 1:1105698/93‑1 (MQ=255)
atcatcGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACg < 2:3409387/93‑1 (MQ=255)
tcatcGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACgg > 2:484992/1‑93 (MQ=255)
tcatcGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACgg < 2:1014689/93‑1 (MQ=255)
ccaccGACATCTGGCGCAGCACCGTCGATCGCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACgg < 2:399722/89‑1 (MQ=255)
catcGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGc > 2:1968348/1‑93 (MQ=255)
ctcGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCa < 1:1667941/92‑1 (MQ=255)
tcGATATCTGGCGCAGCACCGTCGATGCCATGTACGAGAACTATCCCTTCCCGCAGAACAACGGTAACAGTCAGCATGTCCGCTGGACGGCAc < 2:5941917/93‑1 (MQ=255)
cGATATCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACt < 1:2951586/93‑1 (MQ=255)
tatCTGGCGCAGCACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAc < 1:2978303/93‑1 (MQ=255)
||||
GATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCCAAGCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAC > NC_000913/3222863‑3223026
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACGGCGAATACGATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑CAAG‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT > NC_000913/3222851‑3223027
|
AACGGCGAATACGATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑A < SRR4302532.2056587/94‑1 (MQ=60)
ATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGC > SRR4302532.5519167/1‑94 (MQ=60)
ATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGC > SRR4302532.5577145/1‑94 (MQ=60)
ATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGC > SRR4302532.4557715/1‑94 (MQ=60)
TCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCC > SRR4302532.39629/1‑94 (MQ=60)
CAGGTGTCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCA < SRR4302532.1074731/94‑1 (MQ=60)
CAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCA > SRR4302532.5145163/1‑94 (MQ=60)
AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGTCGCAGCA‑‑‑‑CCGTCGATGCCAT < SRR4302532.4813828/94‑1 (MQ=60)
AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCAT > SRR4302532.319011/1‑94 (MQ=60)
AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCAT > SRR4302532.2635912/1‑94 (MQ=60)
GGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATG > SRR4302532.3001694/1‑94 (MQ=60)
GGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATG < SRR4302532.4863421/94‑1 (MQ=60)
GGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATG > SRR4302532.5297100/1‑94 (MQ=60)
GTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGT < SRR4302532.5637910/94‑1 (MQ=60)
GTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGT < SRR4302532.6255976/94‑1 (MQ=60)
TGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTT < SRR4302532.2980786/94‑1 (MQ=60)
GGCGTATTGCGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTC < SRR4302532.476554/94‑1 (MQ=60)
GGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTC > SRR4302532.6000510/1‑94 (MQ=60)
GGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTC < SRR4302532.3355837/94‑1 (MQ=60)
GGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTC > SRR4302532.4118597/1‑94 (MQ=60)
GGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTC < SRR4302532.2151247/94‑1 (MQ=60)
GGCGTATTACGGTCGTGGACCGGGCGAAAACCAAGCCGACAGCCCGCAAGCTAACATCATCTATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTC > SRR4302532.1684594/1‑94 (MQ=57)
CGTATTACGGTCGTGGACCGGGCGAAACCTACACCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGA < SRR4302532.2577644/94‑1 (MQ=60)
GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAG < SRR4302532.3175027/94‑1 (MQ=60)
GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAG > SRR4302532.49662/1‑94 (MQ=60)
TATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGA > SRR4302532.4166788/1‑94 (MQ=60)
TATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGA > SRR4302532.5633242/1‑94 (MQ=60)
TATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGA > SRR4302532.683191/1‑94 (MQ=60)
ATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAA > SRR4302532.2155053/1‑94 (MQ=60)
ATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAA > SRR4302532.3666979/1‑94 (MQ=60)
TTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAAC > SRR4302532.3092144/1‑94 (MQ=60)
TACGGTCGTGGACCGGGCGAAACCTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACT < SRR4302532.4742787/94‑1 (MQ=60)
TACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACT < SRR4302532.4050434/94‑1 (MQ=60)
CGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTAT < SRR4302532.1158135/94‑1 (MQ=60)
GGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATC > SRR4302532.5342660/1‑94 (MQ=60)
GGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATC < SRR4302532.6195184/94‑1 (MQ=60)
GGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATC > SRR4302532.3068867/1‑94 (MQ=60)
GTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCC > SRR4302532.3112074/1‑94 (MQ=60)
tcggtgacaGGGCGACAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGCCGATGCCATGTTCGAGAACTATCCC < SRR4302532.31822/85‑1 (MQ=60)
TCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCC > SRR4302532.555657/1‑94 (MQ=60)
TCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCC < SRR4302532.6026715/94‑1 (MQ=60)
CGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCT < SRR4302532.6294885/94‑1 (MQ=60)
GTGGACCGGGCGAAAACTACGCCTACAGGCAGCAGGCTAACATCATCCATTTCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT < SRR4302532.4421208/94‑1 (MQ=60)
GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT < SRR4302532.963129/94‑1 (MQ=60)
GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT < SRR4302532.1378730/94‑1 (MQ=60)
GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT < SRR4302532.4852332/94‑1 (MQ=60)
GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT > SRR4302532.6225149/1‑94 (MQ=60)
TGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTC > SRR4302532.5434428/1‑94 (MQ=60)
TGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTC < SRR4302532.6128486/94‑1 (MQ=60)
GGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCC < SRR4302532.113961/94‑1 (MQ=60)
GGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCC < SRR4302532.113962/94‑1 (MQ=60)
GGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCC < SRR4302532.4734130/94‑1 (MQ=60)
GGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCC < SRR4302532.887454/94‑1 (MQ=60)
GACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCC > SRR4302532.4282368/1‑94 (MQ=60)
GACCGGGCGAAAACAACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCC < SRR4302532.2799963/94‑1 (MQ=60)
CCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGC > SRR4302532.2064762/1‑94 (MQ=60)
CCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGCCGATGCCATGTTCGTGAACTATACCTTCCCGC > SRR4302532.3489584/1‑94 (MQ=60)
GGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAG > SRR4302532.45602/1‑94 (MQ=60)
GGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAG < SRR4302532.1061097/94‑1 (MQ=60)
CGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAAC > SRR4302532.3236019/1‑94 (MQ=60)
CGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAAC < SRR4302532.2084622/94‑1 (MQ=60)
AAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAA < SRR4302532.1439756/94‑1 (MQ=60)
AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC > SRR4302532.5592002/1‑94 (MQ=60)
AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC < SRR4302532.2762234/94‑1 (MQ=60)
AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC < SRR4302532.4471000/94‑1 (MQ=60)
ACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGG < SRR4302532.6083845/94‑1 (MQ=60)
ACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGG > SRR4302532.979167/1‑94 (MQ=60)
CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGT > SRR4302532.6326535/1‑94 (MQ=60)
CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGT < SRR4302532.2854711/94‑1 (MQ=60)
TACCCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTA < SRR4302532.2450910/94‑1 (MQ=60)
GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC > SRR4302532.2266209/1‑94 (MQ=60)
CCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC < SRR4302532.2000504/94‑1 (MQ=60)
CCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCG > SRR4302532.4421640/1‑94 (MQ=60)
CCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCG > SRR4302532.2431676/1‑94 (MQ=60)
CCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCG < SRR4302532.4360201/94‑1 (MQ=60)
CGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGT < SRR4302532.2935508/94‑1 (MQ=60)
ACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCA < SRR4302532.1753812/94‑1 (MQ=60)
ACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCA < SRR4302532.2570358/94‑1 (MQ=60)
CAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAG > SRR4302532.4537244/1‑94 (MQ=60)
AGCCAGCGGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCCGAACAACGGTAACCGTCAGC > SRR4302532.949021/1‑94 (MQ=60)
AGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGC < SRR4302532.2459178/94‑1 (MQ=60)
AGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGC > SRR4302532.3657605/1‑94 (MQ=60)
AGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGC > SRR4302532.3484969/1‑94 (MQ=60)
CCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT > SRR4302532.5973742/1‑94 (MQ=60)
CCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT < SRR4302532.3548661/94‑1 (MQ=60)
CCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT > SRR4302532.1930725/1‑94 (MQ=60)
CAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATG > SRR4302532.2961880/1‑94 (MQ=60)
CAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCCTCCCGCAGAACAACGGTAACCGCCAGCATG > SRR4302532.3751596/1‑94 (MQ=60)
AGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCG < SRR4302532.2319687/94‑1 (MQ=60)
AGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCG > SRR4302532.1372637/1‑94 (MQ=60)
AGGCTAACATCATAGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGACAACTCTCCCTTCCCGCAGAACAACGGCAACCGTCAGGATGTCCG > SRR4302532.5589995/1‑94 (MQ=57)
GGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGC > SRR4302532.1597611/1‑94 (MQ=60)
CTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG > SRR4302532.4698544/1‑94 (MQ=60)
CTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG > SRR4302532.2380979/1‑94 (MQ=60)
CTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCCTCAGCATGTCCGCTG > SRR4302532.4599105/1‑94 (MQ=60)
TAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGG > SRR4302532.386145/1‑94 (MQ=60)
TAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGG > SRR4302532.3760745/1‑94 (MQ=60)
TAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGG > SRR4302532.4893424/1‑94 (MQ=60)
ACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGAC < SRR4302532.6088938/94‑1 (MQ=60)
CATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACG < SRR4302532.396683/94‑1 (MQ=60)
CATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACG < SRR4302532.1820060/94‑1 (MQ=60)
CATCATCGATATCTGGCGC‑‑‑‑AGCCCCGTCGATGCCATGTTCTAGAACTATCCCTTCCTGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACG < SRR4302532.6226311/94‑1 (MQ=60)
ATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGcggg > SRR4302532.1607385/1‑90 (MQ=60)
ATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGG < SRR4302532.1142662/94‑1 (MQ=60)
CATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCA > SRR4302532.4333208/1‑94 (MQ=60)
CTCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCAC < SRR4302532.1724389/94‑1 (MQ=60)
ATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCAC > SRR4302532.4667136/1‑94 (MQ=60)
TCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACT < SRR4302532.1571229/94‑1 (MQ=60)
TCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACT < SRR4302532.944224/94‑1 (MQ=60)
CGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTG < SRR4302532.3049434/94‑1 (MQ=60)
TATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT < SRR4302532.3076840/94‑1 (MQ=60)
TATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT > SRR4302532.1772637/1‑94 (MQ=60)
TATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT > SRR4302532.3878602/1‑94 (MQ=60)
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AACGGCGAATACGATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑CAAG‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT > NC_000913/3222851‑3223027
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
