Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 95.0%
| 315.4
/ 13.0
| 121 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/6); new base C (9/106); total (9/112) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.48e-01 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 95.0%
| 313.6
/ 13.0
| 121 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/6); new base C (9/106); total (9/112) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.37e-01 |
Only 100 of 131 total aligned reads displayed.
GAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAA‑GC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957001‑3957173
||
gAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑cc < 2:24706/93‑2 (MQ=255)
aggtaggtAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑Ccctct < 1:2235990/93‑2 (MQ=255)
ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑Ccctctc < 1:2051478/93‑3 (MQ=255)
gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑Ccctctcc < 2:83347/93‑4 (MQ=255)
gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑Ccctctcc < 1:5512205/93‑4 (MQ=255)
taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCTCACCCCCA‑‑CCCTccccc > 2:5306005/1‑91 (MQ=255)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCcaca < 1:1490220/93‑1 (MQ=38)
taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACag < 1:3943828/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACagg < 1:5874305/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACagg < 1:1506081/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACagg < 1:5127257/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACagg < 1:442242/93‑1 (MQ=37)
gAAGCTGCGAGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACaggga < 1:614449/93‑1 (MQ=25)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACaggga < 2:1391639/93‑1 (MQ=37)
aaaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACagggag < 2:308817/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACagggaga < 2:308317/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGAGATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACagggaga < 2:1602838/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCCTACCCCGAGCCTCTCCCACacggcgaggg > 1:1180540/1‑93 (MQ=255)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAgggagagggaga < 2:5863167/93‑1 (MQ=25)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAgggagagggaga < 1:1462075/93‑1 (MQ=25)
cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCCACCCTCTCCCCCcgggagagggagga > 2:5349304/1‑91 (MQ=25)
cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGaa < 1:5147220/93‑1 (MQ=25)
ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCGCTCCCACAGGGAGAGGGAGaaa < 1:2054224/93‑1 (MQ=25)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAac < 1:3113233/93‑1 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAac < 2:3949230/93‑1 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACACGGGGGGGGGGaaaaa > 1:6123685/1‑92 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCGCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑t > 1:4305824/1‑93 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑Tc < 2:1701736/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCa < 1:5177571/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCa < 2:1476689/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCa < 1:5765629/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCa < 1:48730/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCa < 2:6072941/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAA‑g < 1:5565873/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAA‑g < 1:4575268/93‑1 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAA‑ggc < 2:2422879/93‑3 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGATAAAACAC‑TCAAGGC‑CTtc < 2:2436726/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtc < 2:3465767/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtc < 2:4706130/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtc < 1:927910/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtctc < 2:83547/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtctc < 2:3726613/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtctc < 2:1435796/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtctc < 2:4978611/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTtctc < 1:5707864/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGA‑CTTCTcc < 1:1415221/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCt < 2:2489644/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCt < 1:2148729/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTg < 2:2488997/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTg < 2:4609262/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCGCACAGGGAGAGGGAGAAAACAA‑TCAAGGC‑CTTCTCCTgg > 2:2718552/1‑93 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGga < 2:2782371/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGga < 2:2265983/93‑1 (MQ=18)
gTATTGCTGTTGCGGGGTAAGTGCGCGCTGATGCCCTCCCCCCCACCCTCTCCCCCAAGGCGAAGGGGGAAACAC‑CCAA‑ACGCTTCTccctga > 2:3382122/1‑89 (MQ=12)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGgaga < 2:3572386/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGgaga < 2:677933/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGaa < 2:3302854/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGaa < 1:4612686/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAg < 1:1635564/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAg < 1:4438388/93‑1 (MQ=18)
tcTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAgg < 2:3497629/92‑1 (MQ=18)
cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCCCTCCCCCATGGAGGGGGGGGGAACACACCAA‑GC‑CGTCTCCCGGAGAAGGc > 1:5374225/1‑93 (MQ=12)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGcc < 1:4805151/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGcc < 1:4017842/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCt < 2:3425918/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCt < 1:4595024/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCtt < 1:1001283/93‑1 (MQ=18)
ttGAGGGTTAAGTGCGCGCTGATGCCCTCGCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCtt < 1:3740307/93‑1 (MQ=18)
gCGTGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGc < 2:6103709/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGc < 1:3264256/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGc < 2:1641988/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTAt < 2:1441983/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTAt < 2:5205762/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTAt < 1:1657751/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:5340369/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:2676680/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:5975077/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:2776490/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:3664536/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:335793/93‑1 (MQ=18)
gTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:441583/93‑1 (MQ=18)
tGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:4714255/93‑1 (MQ=21)
tGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:1113653/93‑1 (MQ=21)
tGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCCGGAGAAGGCCTTGCTATTAGTTGc < 1:1554658/93‑1 (MQ=18)
gcgcgcTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:797858/93‑1 (MQ=21)
gcgcTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 2:2590604/93‑1 (MQ=21)
cgcTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTa < 2:3129113/93‑1 (MQ=21)
gATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:832/93‑1 (MQ=25)
gCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 1:1580149/93‑1 (MQ=25)
cccTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:4872583/93‑1 (MQ=25)
ccTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:3915710/93‑1 (MQ=25)
cTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa < 1:2350572/93‑1 (MQ=37)
cTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCCTGCTATTAGTTGCGGTACAGCACCTTa > 2:136447/1‑93 (MQ=25)
tCACCCCGACCCTCTCCCCCAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:1243656/1‑93 (MQ=25)
tCACCCCGACCCTCTCCCACAGGGAGCGGGAGGAAACAC‑TCAAGGC‑CTTCTCCTTGCGCAGGCCTTGCTATTAGTTGTGGTACCGGGCCTTaa > 2:1513959/1‑93 (MQ=16)
tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:5846674/1‑93 (MQ=37)
tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:1102475/1‑93 (MQ=37)
tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:1563701/1‑93 (MQ=37)
ccACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:4925545/92‑1 (MQ=37)
cACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAAGGC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:4189783/93‑1 (MQ=37)
||
GAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACAC‑TCAA‑GC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957001‑3957173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > NC_000913/3957002‑3957183
|
gcgagtcacagAAGAAACTGCTCCGCTATATGACAGATATGGAACGTATTGCTGTTGCGGGGTAAGTGCGCCCTGAGGCCCTCTCCCCGA‑‑CCCT < SRR4302532.941842/83‑1 (MQ=49)
AGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CCCTCTC < SRR4302532.2310182/94‑1 (MQ=60)
GGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCC < SRR4302532.2119792/94‑1 (MQ=60)
GTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCC < SRR4302532.5703483/94‑1 (MQ=60)
ggggAAGAAACTTCGCGGCTATATGACAGATAAGAAACGTATTGCTGTTGCGGGTTAAGTTCGCGCTGATGCCCTCCCCCCGACCCTCTCCCAC < SRR4302532.5058144/90‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCAC < SRR4302532.693345/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAG < SRR4302532.1540495/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGG < SRR4302532.4076723/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGG < SRR4302532.5303639/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGG < SRR4302532.1556917/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGG < SRR4302532.6077845/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGG < SRR4302532.457539/94‑1 (MQ=60)
GAAGCTGCGAGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAG < SRR4302532.635869/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCCTACCCCGAGCCTCTCCCACACGGCGAGGG > SRR4302532.1219978/1‑94 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGA < SRR4302532.1615054/94‑1 (MQ=60)
GCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAA < SRR4302532.1511343/94‑1 (MQ=60)
CGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAA < SRR4302532.5324292/94‑1 (MQ=60)
GGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCGCTCCCACAGGGAGAGGGAGAAAA < SRR4302532.2122631/94‑1 (MQ=60)
GGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCCACCCCCTCCCACAGGGGGAGGGAGAAAA > SRR4302532.5431759/1‑94 (MQ=60)
GCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAcggggggggggaaaaa > SRR4302532.6335004/1‑78 (MQ=60)
CTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACA < SRR4302532.3216522/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCGCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACT > SRR4302532.4451411/1‑94 (MQ=60)
ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCA < SRR4302532.1529299/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA < SRR4302532.50451/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA < SRR4302532.5966259/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA < SRR4302532.4435097/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA < SRR4302532.5355871/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACCCTCAA‑G < SRR4302532.1915310/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G < SRR4302532.5812098/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GG < SRR4302532.5759144/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GG < SRR4302532.4731294/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCACCCCGACCCGCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GGC < SRR4302532.3086777/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTC < SRR4302532.3253024/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGGTAAGTGCGCGCTGATGGACTCACCCCGA‑‑Ccccctcccacagcgagagagcgagaaaactccagcacctc > SRR4302532.1684079/1‑54 (MQ=54)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302532.3822783/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302532.959695/94‑1 (MQ=60)
GAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCC < SRR4302532.5906851/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGACTTCTCCT < SRR4302532.1462704/94‑1 (MQ=55)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTG < SRR4302532.2220533/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302532.4769970/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGG < SRR4302532.1690928/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGG < SRR4302532.4589634/94‑1 (MQ=60)
GCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑Ccccctcccccatggagggggggggaacacaccaagccgtctcccggagaaggc > SRR4302532.5560417/1‑41 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCT < SRR4302532.4153232/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCT < SRR4302532.4970628/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302532.4751670/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302532.1035368/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCGCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302532.4797533/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCCCTGACGCCCCCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302532.4579156/94‑1 (MQ=55)
TTGAGGGTTAAGTGCGCGCTGATGCCCTCGCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302532.3865998/94‑1 (MQ=50)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302532.3372812/94‑1 (MQ=60)
GGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATT < SRR4302532.1713931/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCCACCCTCTCCCCCAGGGAGGGGGGGAAAACACTCAAGGACTTCTCCTGGAGAAGGCCTTGCTATTT > SRR4302532.6263290/1‑94 (MQ=39)
AAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302532.2766509/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302532.2869667/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302532.3787605/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302532.456855/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302532.4875107/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCCGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302532.1607229/94‑1 (MQ=52)
TGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302532.5188497/94‑1 (MQ=60)
GATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302532.871/94‑1 (MQ=60)
GCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCT < SRR4302532.1633654/94‑1 (MQ=60)
GCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCT < SRR4302532.2221497/94‑1 (MQ=60)
CTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA < SRR4302532.2428994/94‑1 (MQ=60)
tccccccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302532.1360927/83‑1 (MQ=60)
ACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302532.4383038/1‑94 (MQ=60)
ACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302532.2292258/1‑94 (MQ=60)
CCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302532.1800449/1‑94 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302532.1213051/89‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG > SRR4302532.614219/6‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302532.2396082/5‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302532.2093808/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302532.433881/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGATAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302532.443944/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGTGGTACAGCACCTTAATGATGTGATA > SRR4302532.4268279/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302532.2926230/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA < SRR4302532.3297974/92‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCCTAATGATGTGATA < SRR4302532.3342236/92‑1 (MQ=60)
|
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > NC_000913/3957002‑3957183
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
