Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 95.4%
| 401.8
/ 16.1
| 153 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base C (5/141); total (5/148) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 95.4%
| 402.6
/ 16.1
| 153 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base C (5/141); total (5/148) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.41e-01 |
Only 100 of 167 total aligned reads displayed.
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173
||
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑c < 2:3254375/93‑1 (MQ=255)
aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:1551755/93‑3 (MQ=255)
aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:3112562/93‑3 (MQ=255)
aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:5164218/93‑3 (MQ=255)
gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc‑‑‑t < 1:703850/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccc‑‑‑tc < 1:1021298/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccc‑‑‑tc < 2:809937/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccc‑‑‑tc < 1:1555842/93‑1 (MQ=255)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCcaca < 2:408603/93‑1 (MQ=38)
taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACag < 1:2864458/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagg < 1:2420264/93‑1 (MQ=37)
aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggg < 1:3184175/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 1:3927307/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:6031079/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:5567110/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:4771747/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:2121284/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagag < 1:80414/93‑1 (MQ=37)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagagg < 2:1259763/93‑1 (MQ=25)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagagg < 1:4563853/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagaggg < 1:152831/93‑1 (MQ=25)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagaggga < 1:177466/93‑1 (MQ=25)
cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagagggag < 2:3759527/93‑1 (MQ=25)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGaaaa < 1:5135331/93‑1 (MQ=21)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCCC‑‑‑TCCCACAGGGAGCGGGAGaaaa > 2:3279794/1‑93 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAaca < 1:5849000/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCACCCCC‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAaca > 2:5469641/1‑93 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCAACCCGACA‑‑CTC‑‑‑TCCCCCCAGGGGAGGGGGAAAaca > 1:3343323/1‑93 (MQ=25)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAacac < 2:2783006/93‑1 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTc < 2:1174069/93‑1 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTc < 2:2793655/93‑1 (MQ=21)
gACAGATATGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGCCC‑‑CGC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 2:3294301/93‑1 (MQ=18)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 2:1806617/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 1:2508504/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 1:1904400/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:1973059/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 2:397507/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:3033432/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 2:675265/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCAGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:5979940/93‑1 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑gg < 1:5549775/93‑2 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggc < 2:1443408/93‑3 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcc < 1:9338/93‑4 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 2:5607446/93‑5 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAAGGAGAAAACACTC‑AA‑ggcct < 2:6649291/93‑5 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 1:2687964/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:2281234/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:392906/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:4103406/93‑1 (MQ=18)
accGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGCCC‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 1:4575859/91‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 2:4929641/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTg < 2:3706130/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTg < 2:3890355/93‑1 (MQ=21)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 1:2062873/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 1:5716829/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 2:624573/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 2:399765/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCTCACCGCGAGAGGGAGAAAAAACGCAAA‑GCCTTCTCCTGGAGaa > 2:4808822/1‑93 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:3736839/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:5425655/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:2692190/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:4010176/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:888500/93‑1 (MQ=18)
cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGc < 2:5464697/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGcc < 1:1270206/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGcc < 2:4740879/93‑1 (MQ=18)
tttGCGGGTTAAGTTCGCGCTGATCCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGTGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:552755/92‑1 (MQ=18)
gTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:6429211/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:5530893/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:4337576/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:4950168/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 2:5130233/93‑1 (MQ=18)
tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTg < 2:1958098/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:657926/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:3748690/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:5063741/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:3034061/93‑1 (MQ=18)
gggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTa < 1:4431487/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGCTGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 1:398457/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCCCCCCCCC‑‑C‑‑CCCCCTTCCCCCGGGGGGGGGGGGAAAAAACCC‑AA‑GCCCTCCCCTGGGGAAGGCCCTGCttt > 2:4506482/1‑91 (MQ=255)
gTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 2:2273293/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 2:5187312/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:3226459/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:1487841/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:2729588/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5071597/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5640282/93‑1 (MQ=18)
gTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 2:1970743/93‑1 (MQ=18)
tGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:4398858/93‑1 (MQ=21)
gcgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:2529276/93‑1 (MQ=21)
cgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 2:6278852/93‑1 (MQ=21)
cgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCGCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:6403099/93‑1 (MQ=18)
tGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:2980254/93‑1 (MQ=25)
gATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:3058079/93‑1 (MQ=25)
ccTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGGGAGGGAGAAAACACTC‑AAGGCCTTTTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt > 2:3315625/1‑93 (MQ=25)
ccTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 1:5960311/93‑1 (MQ=25)
cTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa > 1:6513542/1‑93 (MQ=37)
tCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:1019747/93‑1 (MQ=37)
tCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:2986405/93‑1 (MQ=37)
cACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:79103/93‑1 (MQ=37)
||
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957003‑3957184
|
GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑C‑‑CCTC < SRR4302547.716857/94‑1 (MQ=60)
CAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < SRR4302547.207446/94‑6 (MQ=60)
CAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < SRR4302547.1910553/94‑6 (MQ=60)
CAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < SRR4302547.1041322/94‑6 (MQ=60)
CAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < SRR4302547.1586798/94‑6 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGG < SRR4302547.2921675/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGG < SRR4302547.3115930/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGG < SRR4302547.2244094/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGG < SRR4302547.2469256/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGG < SRR4302547.5842267/94‑1 (MQ=60)
AGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGA < SRR4302547.6431814/94‑1 (MQ=60)
AGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGA < SRR4302547.3247628/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCC‑‑TCTCCCACAGGGAG < SRR4302547.4007185/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAG < SRR4302547.5590625/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGG < SRR4302547.81916/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGG < SRR4302547.4658274/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGG < SRR4302547.5163113/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGA < SRR4302547.155619/94‑1 (MQ=60)
GCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAG < SRR4302547.180765/94‑1 (MQ=60)
GCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAA < SRR4302547.2579981/94‑1 (MQ=60)
GCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAAC < SRR4302547.5241135/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302547.5969985/94‑1 (MQ=60)
TATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC < SRR4302547.6019613/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA < SRR4302547.4305938/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302547.2559219/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302547.1942077/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302547.5667212/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GG < SRR4302547.2012231/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GG < SRR4302547.3093757/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCAGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GG < SRR4302547.6103982/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GGC < SRR4302547.5664284/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccccctcccacacggagggggggaaaaaaaccaaggc > SRR4302547.2224033/1‑58 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCT < SRR4302547.9510/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTT < SRR4302547.3312236/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTT < SRR4302547.5003634/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTC < SRR4302547.1003472/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTC < SRR4302547.1509883/94‑1 (MQ=60)
atgaactgcattgatgtcggcaGTTAAGTGCGCGCTGATTCCCTGCCCCCG‑‑C‑‑CCGTCGCCCACAGGGAGAGGGAGAAAACACTC‑AA‑Ggccttat < SRR4302547.6259867/72‑8 (MQ=11)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302547.2741917/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302547.1328040/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302547.3877077/94‑1 (MQ=60)
ACCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTG < SRR4302547.4670574/94‑1 (MQ=42)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGA < SRR4302547.5834913/94‑1 (MQ=60)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGA < SRR4302547.2104034/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302547.2746234/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302547.4091688/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302547.5537858/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302547.3813136/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCT < SRR4302547.1295783/94‑1 (MQ=60)
TTTGCGGGTTAAGTTCGCGCTGATCCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGTGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302547.562715/94‑1 (MQ=49)
GTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302547.6563239/94‑1 (MQ=49)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302547.5645052/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302547.3725099/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302547.2586554/94‑1 (MQ=60)
GTCGCGGGTTAAGTGCGCCCTGATGCCCTCCCCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302547.1102190/94‑1 (MQ=38)
CTTGCGGGTTAAGTGCGCGCTGATGCTCTCACCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302547.6546601/94‑1 (MQ=45)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302547.5052664/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302547.6703651/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302547.3825212/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCC‑‑TCTCCCCCCGGGGGAGGGGGAAAACACCCAAA‑GCCTTCTCCTCGAGAAGGGCCTGCT > SRR4302547.2248669/1‑94 (MQ=15)
GGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑C‑‑TCTCCCCCAGGGGGAGGGAGAAAACACTCcaaagcttctcctctaggagggcctgctat > SRR4302547.2255933/1‑64 (MQ=0)
GGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAT < SRR4302547.4523089/94‑1 (MQ=60)
GGTTAAGTGCGCGCTGCTGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATT < SRR4302547.405868/94‑1 (MQ=60)
GGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATT < SRR4302547.895682/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302547.4559902/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACGGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302547.4027872/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302547.3290853/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302547.5756713/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302547.5663915/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302547.5176235/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302547.731518/94‑1 (MQ=60)
GCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGG < SRR4302547.2580394/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302547.5435538/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCGCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302547.6536655/94‑1 (MQ=56)
GCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302547.2958970/94‑1 (MQ=60)
GCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302547.1793472/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302547.3039555/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302547.282125/94‑1 (MQ=60)
CCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTA > SRR4302547.6649136/1‑94 (MQ=60)
CCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTA < SRR4302547.6083903/94‑1 (MQ=60)
CTCACCCCG‑‑ACCC‑‑TCTCCCCCAGGGGGAGGGAGAAAACACTC‑AAGGCCTTCTTCTGGAGAAAGCCTTGTTAATAGTTGCcgcaaagacccctta > SRR4302547.1553319/1‑79 (MQ=20)
TCACCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302547.2674732/94‑1 (MQ=60)
TCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302547.3045826/94‑1 (MQ=60)
TCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302547.1039732/94‑1 (MQ=60)
CACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTGGTTGCGGTACAGCACCTTAATG > SRR4302547.2089307/1‑94 (MQ=60)
CACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302547.80582/94‑1 (MQ=60)
ACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302547.4329731/1‑94 (MQ=60)
ACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302547.3970247/1‑94 (MQ=60)
cccccgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA < SRR4302547.6273102/85‑1 (MQ=60)
cccccgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA < SRR4302547.6488127/85‑1 (MQ=60)
CCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302547.6295771/1‑94 (MQ=60)
CCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302547.5238099/1‑94 (MQ=60)
CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302547.4753994/94‑1 (MQ=60)
cgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302547.5862786/89‑1 (MQ=60)
cgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302547.3942351/89‑1 (MQ=60)
cgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302547.4000347/89‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.1039347/90‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.642216/90‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302547.6349048/5‑94 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.3791917/90‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.2105085/90‑1 (MQ=60)
accC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT < SRR4302547.6687241/91‑1 (MQ=60)
C‑‑C‑‑TCTCCCACCGGGAGAGGGGGAAAACACTC‑AAGGCCTTCTCCTGGACAATGCCTAGCTATTAGTTGCGGTACTGCACCTTAATGATGTGATAT > SRR4302547.1416436/1‑94 (MQ=60)
C‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302547.2650681/1‑94 (MQ=60)
ccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302547.5147919/3‑94 (MQ=60)
C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302547.4015008/1‑94 (MQ=60)
C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302547.1288827/1‑94 (MQ=60)
C‑‑TCTCCAACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302547.4293631/1‑94 (MQ=60)
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GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957003‑3957184
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
