Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,124 |
+G |
intergenic (+58/+26) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,123 | 1 | . | G | 100.0%
| 487.4
/ NA
| 156 | intergenic (+57/+27) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (49/107); total (49/107) |
Only 100 of 171 total aligned reads displayed.
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957033‑3957210
|
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 1:4575268/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 1:5565873/93‑1 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCACCCCGACCCGCTCCCACAGGGAGAGGGAGAAAACACTCAA‑gg < 1:2987998/93‑2 (MQ=18)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑ggcct < 2:1093455/93‑5 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGATAAAACACTCAAGG‑C‑CTtc < 2:2436726/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTtc < 2:3465767/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTtc < 1:927910/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTtc < 1:3698608/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTtctc < 2:1435796/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTtctc < 1:5707864/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTtctc < 2:83547/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTtctc < 2:3726613/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCt < 1:2148729/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCt < 2:5607142/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCt < 2:2489644/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTg < 2:2488997/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCGCACAGGGAGAGGGAGAAAACAATCAAGG‑C‑CTTCTCCTgg > 2:2718552/1‑93 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGga < 2:2265983/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGga < 2:2782371/93‑1 (MQ=18)
gTATTGCTGTTGCGGGGTAAGTGCGCGCTGATGCCCTCCCCCCCACCCTCTCCCCCAAGGCGAAGGGGGAAACACCCAA‑A‑CGCTTCTccctga > 2:3382122/1‑89 (MQ=12)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGgaga < 2:677933/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGgaga < 2:3572386/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGaa < 1:4612686/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAg < 1:4438388/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGcc < 1:4805151/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCtt < 1:1001283/93‑1 (MQ=18)
ttGAGGGTTAAGTGCGCGCTGATGCCCTCGCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCtt < 1:3740307/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGc < 1:3264256/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGc < 2:2828094/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTAt < 2:1441983/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTAt < 1:1657751/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCACCCCCACCCTCTCCCCCAGGGAGGGGGGGAAAACACTCAAGG‑A‑CTTCTCCTGGAGAAGGCCTTGCTAttt > 1:6054233/1‑92 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:5975077/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:6048778/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:2676680/93‑1 (MQ=18)
gTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:441583/93‑1 (MQ=18)
tGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:1113653/93‑1 (MQ=21)
tGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:4714255/93‑1 (MQ=21)
tGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCCGGAGAAGGCCTTGCTATTAGTTGc < 1:1554658/93‑1 (MQ=18)
gcgcgcTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:3229581/93‑1 (MQ=21)
gcgcTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 2:2590604/93‑1 (MQ=21)
gCCCTCCCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 2:5271009/93‑1 (MQ=25)
gCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 1:2149660/93‑1 (MQ=25)
gCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 1:1580149/93‑1 (MQ=25)
cccTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:4872583/93‑1 (MQ=25)
ccTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:3915710/93‑1 (MQ=25)
cTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa < 1:2350572/93‑1 (MQ=37)
cTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCCTGCTATTAGTTGCGGTACAGCACCTTa > 2:136447/1‑93 (MQ=25)
tCACCCCGACCCTCTCCCCCAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:1243656/1‑93 (MQ=25)
tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:1563701/1‑93 (MQ=37)
tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:1102475/1‑93 (MQ=37)
ccACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:4925545/92‑1 (MQ=37)
cACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:4189783/93‑1 (MQ=37)
gaccctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgtg > 1:593498/5‑93 (MQ=38)
gaccctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgtg < 2:3038699/89‑1 (MQ=38)
accctctCCCACAGGGAGAGAGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGa < 2:3168076/90‑1 (MQ=39)
ccctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGat < 1:3191977/91‑1 (MQ=255)
ccctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGat < 2:5461787/91‑1 (MQ=255)
cctctCCCACAGGGAGAGGGAGATAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata > 1:429083/2‑93 (MQ=39)
cctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGTGGTACAGCACCTTAATGATGTGata > 1:4129723/2‑93 (MQ=39)
cctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata > 1:2831542/2‑93 (MQ=255)
ctctCCCACAGGGAGAGGGGGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat < 2:4643710/93‑1 (MQ=255)
ctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat > 1:2026256/1‑93 (MQ=255)
ctctCCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat > 2:375375/1‑93 (MQ=255)
tctcCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc > 2:1712911/1‑93 (MQ=255)
ctcCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc < 1:4275880/93‑1 (MQ=255)
ctcCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc < 1:3032338/93‑1 (MQ=255)
tcCCACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTGGCGGGACAGCACCTTAATGATGTGATATCCg > 2:5251654/1‑93 (MQ=255)
cccACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGa < 2:4876278/93‑1 (MQ=255)
cccACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGa > 2:2151705/1‑93 (MQ=255)
ccACAGGGAGAGGGAGAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGaa > 2:3398552/1‑93 (MQ=255)
agggagagggagAAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCTGAACtag > 2:4634271/1‑91 (MQ=255)
gggagagggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg > 1:635042/1‑93 (MQ=255)
gggagagggagaAAACACTCAA‑GCC‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg < 1:1269613/93‑1 (MQ=255)
ggagagggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 2:934694/93‑1 (MQ=255)
ggagagggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 1:5659660/93‑1 (MQ=255)
agagggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtgt < 2:4560038/93‑1 (MQ=255)
agggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCTGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 1:2408755/93‑1 (MQ=255)
agggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 2:4142579/93‑1 (MQ=255)
agggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 1:39626/93‑1 (MQ=255)
agggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 2:1559821/93‑1 (MQ=255)
agggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 2:5093887/93‑1 (MQ=255)
gggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa < 2:67956/93‑1 (MQ=255)
gggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa > 1:5469676/1‑93 (MQ=255)
gggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa < 1:5484295/93‑1 (MQ=255)
ggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatgat < 1:4449540/69‑1 (MQ=255)
ggagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatgat > 2:4449540/1‑69 (MQ=255)
gagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGc < 1:2228775/93‑1 (MQ=255)
gagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGc > 1:3511572/1‑93 (MQ=255)
gagaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGc < 1:3305956/93‑1 (MQ=255)
gaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGACATGGGTGTGCAGCgg > 1:1189619/1‑93 (MQ=255)
gaAAACACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg < 2:5717940/93‑1 (MQ=255)
aaaCACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc > 2:5856670/1‑93 (MQ=255)
aaCACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc > 1:6104262/1‑93 (MQ=255)
aaCACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc < 2:4718741/93‑1 (MQ=255)
aaCACTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc > 2:5647772/1‑93 (MQ=255)
cacTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCgg > 2:5798578/1‑93 (MQ=255)
acTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 2:3351885/93‑1 (MQ=255)
cTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc < 1:5322317/93‑1 (MQ=255)
cTCAAGG‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc < 2:1832374/93‑1 (MQ=255)
|
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑C‑CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957033‑3957210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC > NC_000913/3957033‑3957216
|
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACCCTCAA‑G < SRR4302532.1915310/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G < SRR4302532.5812098/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑G < SRR4302532.5759144/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑G < SRR4302532.4731294/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCACCCCGACCCGCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑GC < SRR4302532.3086777/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTC < SRR4302532.3253024/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCT < SRR4302532.959695/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCT < SRR4302532.3822783/94‑1 (MQ=60)
GAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCC < SRR4302532.5906851/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑ACTTCTCCT < SRR4302532.1462704/94‑1 (MQ=55)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTG < SRR4302532.2220533/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAG < SRR4302532.4769970/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGG < SRR4302532.1690928/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGG < SRR4302532.4589634/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCT < SRR4302532.4153232/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCT < SRR4302532.4970628/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302532.4751670/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302532.1035368/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCGCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302532.4797533/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCCCTGACGCCCCCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302532.4579156/94‑1 (MQ=55)
TTGAGGGTTAAGTGCGCGCTGATGCCCTCGCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302532.3865998/94‑1 (MQ=50)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCT < SRR4302532.3372812/94‑1 (MQ=60)
GGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATT < SRR4302532.1713931/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCCACCCTCTCCCCCAGGGAGGGGGGGAAAACACTCAAGG‑ACTTCTCCTGGAGAAGGCCTTGCTATTT > SRR4302532.6263290/1‑94 (MQ=39)
AAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302532.2766509/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302532.2869667/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302532.3787605/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302532.456855/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302532.4875107/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCCGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302532.1607229/94‑1 (MQ=52)
TGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302532.5188497/94‑1 (MQ=60)
GATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302532.871/94‑1 (MQ=60)
GCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCT < SRR4302532.1633654/94‑1 (MQ=60)
GCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCT < SRR4302532.2221497/94‑1 (MQ=60)
CTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA < SRR4302532.2428994/94‑1 (MQ=60)
tccccccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302532.1360927/83‑1 (MQ=60)
ACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302532.4383038/1‑94 (MQ=60)
ACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302532.2292258/1‑94 (MQ=60)
gacgctcttccgatcttcgggatGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG < SRR4302532.4601188/71‑1 (MQ=60)
CCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302532.1800449/1‑94 (MQ=60)
cgaccccctccccccaggggagggaggaaaaactcaAA‑G‑CCCTCTCCTCGAGAAGGGCCTGCTATTAGTTGCGGTACAGCACCTTTATGATATG > SRR4302532.3549728/37‑94 (MQ=24)
cgccccaCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302532.4608138/87‑1 (MQ=60)
cgaccctctcccaccgggagagggggaaaaaaaccaagG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGGTCAGCACCTTCATAATGTG > SRR4302532.2685974/39‑94 (MQ=45)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302532.1213051/89‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG > SRR4302532.614219/6‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302532.2396082/5‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302532.2093808/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302532.433881/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGATAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302532.443944/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGTGGTACAGCACCTTAATGATGTGATA > SRR4302532.4268279/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA < SRR4302532.3297974/92‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302532.2926230/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCCTAATGATGTGATA < SRR4302532.3342236/92‑1 (MQ=60)
CTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCG < SRR4302532.4419841/94‑1 (MQ=60)
CTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCG < SRR4302532.3132402/94‑1 (MQ=60)
CCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAA > SRR4302532.4506962/1‑94 (MQ=60)
CAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGG < SRR4302532.2221159/94‑1 (MQ=60)
AGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGctggagttgcaggaagcaa > SRR4302532.3045096/1‑75 (MQ=60)
AGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGG > SRR4302532.657194/1‑94 (MQ=60)
GGGAGAGGGAGAAAACACTCAA‑GCCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGT < SRR4302532.1312084/94‑1 (MQ=60)
GGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG < SRR4302532.5856833/94‑1 (MQ=60)
GAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGT > SRR4302532.6267387/1‑94 (MQ=60)
GAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGT > SRR4302532.1240752/1‑94 (MQ=60)
AGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTG > SRR4302532.3216371/1‑94 (MQ=60)
AGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCTGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCA < SRR4302532.2488900/94‑1 (MQ=60)
AGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCA > SRR4302532.4708333/1‑94 (MQ=60)
AGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCA > SRR4302532.6109558/1‑94 (MQ=60)
AGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCA < SRR4302532.41052/94‑1 (MQ=60)
AGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCA > SRR4302532.5659302/1‑94 (MQ=60)
GGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAG < SRR4302532.5674441/94‑1 (MQ=60)
GGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC < SRR4302532.2618673/94‑1 (MQ=60)
GGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC > SRR4302532.3629178/1‑94 (MQ=60)
GAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCG < SRR4302532.2302730/94‑1 (MQ=60)
GAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCG < SRR4302532.3416049/94‑1 (MQ=60)
AGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGACATGGGTGTGCAGCGG > SRR4302532.1229386/1‑94 (MQ=60)
GAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG > SRR4302532.229972/1‑94 (MQ=60)
AAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCC > SRR4302532.6314926/1‑94 (MQ=60)
AACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG > SRR4302532.5723640/1‑94 (MQ=60)
AACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG < SRR4302532.4004116/94‑1 (MQ=60)
ACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > SRR4302532.3096114/1‑94 (MQ=60)
ACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC < SRR4302532.6177151/94‑1 (MQ=60)
CTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCG < SRR4302532.5506702/94‑1 (MQ=60)
CTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCG < SRR4302532.3495239/94‑1 (MQ=60)
CAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC < SRR4302532.4664948/94‑1 (MQ=60)
aagG‑CCTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT < SRR4302532.521496/91‑1 (MQ=60)
aagG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT < SRR4302532.6065656/91‑1 (MQ=60)
AG‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTC > SRR4302532.5289048/1‑94 (MQ=60)
G‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC > SRR4302532.1195373/1‑94 (MQ=60)
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GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC > NC_000913/3957033‑3957216
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
