Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,124 |
+G |
intergenic (+58/+26) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,123 | 1 | . | G | 100.0%
| 628.5
/ NA
| 198 | intergenic (+57/+27) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (68/130); total (68/130) |
Only 100 of 220 total aligned reads displayed.
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957033‑3957210
|
gACAGATATGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGCCC‑‑CGC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCaa < 2:3294301/93‑1 (MQ=18)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCaa < 2:1806617/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCaa < 1:5552659/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 2:675265/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 2:397507/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 1:3033432/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCAGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 1:5979940/93‑1 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑ggc < 2:1443408/93‑3 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑ggcct < 1:3247369/93‑5 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAAGGAGAAAACACTCAA‑ggcct < 2:6649291/93‑5 (MQ=21)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc < 2:2659809/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc < 1:3799621/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc < 2:4103406/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCt < 2:4929641/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTg < 2:3890355/93‑1 (MQ=21)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTgg < 2:624573/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga < 2:2126915/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga < 2:5777034/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa < 2:4741643/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa < 1:3736839/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa < 1:2692190/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa < 1:4010176/93‑1 (MQ=18)
gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAgg < 2:5468743/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGcc < 1:1270206/93‑1 (MQ=18)
tttGCGGGTTAAGTTCGCGCTGATCCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGTGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCt < 1:552755/92‑1 (MQ=18)
gTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCt < 1:6429211/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCt < 1:3650639/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCtt < 1:6566924/93‑1 (MQ=18)
tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg < 2:1958098/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:657926/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:5063741/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGCTGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 1:398457/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 2:5136251/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCCCCCCCCC‑‑C‑‑CCCCCTTCCCCCGGGGGGGGGGGGAAAAAACCCAA‑GCCCTCCCCTGGGGAAGGCCCTGCttt > 2:4506482/1‑91 (MQ=255)
ttAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:4467587/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACGGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:3947578/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 2:6083234/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:1487841/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:4364795/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:2729588/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5549412/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5071597/93‑1 (MQ=18)
gTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:718194/93‑1 (MQ=18)
gcgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:2779618/93‑1 (MQ=21)
gcgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:4656646/93‑1 (MQ=21)
gcgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:2529276/93‑1 (MQ=21)
cgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCGCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:6403099/93‑1 (MQ=18)
gcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:1758632/93‑1 (MQ=21)
gcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:2901123/93‑1 (MQ=21)
gATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:3058079/93‑1 (MQ=25)
ccTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGGGAGGGAGAAAACACTCAAGGCCTTTTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt > 2:3315625/1‑93 (MQ=25)
cTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa > 1:6513542/1‑93 (MQ=37)
tCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:1019747/93‑1 (MQ=37)
tCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:2986405/93‑1 (MQ=37)
gaccctc‑‑‑tCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgtg > 2:423680/5‑93 (MQ=38)
gaccctc‑‑‑tCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgtg < 1:2063902/89‑1 (MQ=38)
cccctc‑‑‑tCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGa < 2:2472581/90‑1 (MQ=255)
accctc‑‑‑tCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGa > 1:6219884/4‑93 (MQ=255)
ctc‑‑‑tCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat > 1:2598305/1‑93 (MQ=255)
c‑‑‑tcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc > 1:1018154/1‑93 (MQ=255)
c‑‑‑tcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc > 1:5281892/1‑93 (MQ=255)
cccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGa > 2:4888808/1‑93 (MQ=255)
ccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGaa > 1:1961021/1‑93 (MQ=255)
cacaGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc > 2:1889543/1‑93 (MQ=255)
cacaGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc < 1:2420224/93‑1 (MQ=255)
acaGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCCGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACt > 1:4235026/1‑93 (MQ=255)
caGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTg > 1:5008880/1‑93 (MQ=255)
agggagagggagAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg > 2:779605/1‑93 (MQ=255)
gggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg < 2:5421783/93‑1 (MQ=255)
gggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg > 2:1988727/1‑93 (MQ=255)
ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACGTTAATGATGTGATATCCGAACTGGgt > 1:5359187/1‑93 (MQ=255)
ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGGACTGGgt > 1:5584983/1‑93 (MQ=255)
ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt > 2:3546595/1‑93 (MQ=255)
ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 2:5623383/93‑1 (MQ=255)
ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 1:6053312/93‑1 (MQ=255)
gaagagggataAAACACTCAAGGCCTAATCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 1:1438115/91‑1 (MQ=255)
gagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtg > 1:3372099/1‑93 (MQ=255)
gagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtg > 1:5406358/1‑93 (MQ=255)
agagagagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtgt < 1:2045136/93‑1 (MQ=255)
gagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg < 2:59354/93‑1 (MQ=255)
gagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg > 1:5684652/1‑93 (MQ=255)
agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc > 1:2543375/1‑93 (MQ=255)
agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 2:5126253/93‑1 (MQ=255)
agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 2:6001362/93‑1 (MQ=255)
agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGACTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc > 1:3694301/1‑93 (MQ=255)
ggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAg > 2:2282821/1‑93 (MQ=255)
gaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg > 2:86138/1‑93 (MQ=255)
gaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg < 1:4689880/93‑1 (MQ=255)
aaaaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg < 2:4449947/93‑1 (MQ=255)
aaaaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg > 2:1189650/1‑93 (MQ=255)
aaaaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg > 1:808861/1‑93 (MQ=255)
aaaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc > 1:5898710/1‑93 (MQ=255)
acacTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg < 2:1359588/93‑1 (MQ=255)
acacTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg < 1:1165256/93‑1 (MQ=255)
cacTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCgg > 2:5185151/1‑93 (MQ=255)
acTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt > 2:5580564/1‑93 (MQ=255)
acTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt > 2:3768134/1‑93 (MQ=255)
acTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt > 2:3401990/1‑93 (MQ=255)
acTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 1:1570992/93‑1 (MQ=255)
cTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc > 2:2259072/1‑93 (MQ=255)
|
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957033‑3957210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957033‑3957217
|
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302547.1942077/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302547.2559219/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302547.5667212/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑G < SRR4302547.2012231/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑G < SRR4302547.3093757/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCAGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑G < SRR4302547.6103982/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑GC < SRR4302547.5664284/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCT < SRR4302547.9510/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTT < SRR4302547.3312236/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTT < SRR4302547.5003634/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTC < SRR4302547.1509883/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTC < SRR4302547.1003472/94‑1 (MQ=60)
atgaactgcattgatgtcggcaGTTAAGTGCGCGCTGATTCCCTGCCCCCG‑‑C‑‑CCGTCGCCCACAGGGAGAGGGAGAAAACACTC‑AA‑Ggccttat < SRR4302547.6259867/72‑8 (MQ=11)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCT < SRR4302547.1328040/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCT < SRR4302547.2741917/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCT < SRR4302547.3877077/94‑1 (MQ=60)
ACCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTG < SRR4302547.4670574/94‑1 (MQ=42)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGA < SRR4302547.5834913/94‑1 (MQ=60)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGA < SRR4302547.2104034/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAG < SRR4302547.5537858/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAG < SRR4302547.2746234/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAG < SRR4302547.3813136/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAG < SRR4302547.4091688/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCT < SRR4302547.1295783/94‑1 (MQ=60)
TTTGCGGGTTAAGTTCGCGCTGATCCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGTGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302547.562715/94‑1 (MQ=49)
GTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302547.6563239/94‑1 (MQ=49)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302547.3725099/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302547.5645052/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302547.2586554/94‑1 (MQ=60)
GTCGCGGGTTAAGTGCGCCCTGATGCCCTCCCCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302547.1102190/94‑1 (MQ=38)
CTTGCGGGTTAAGTGCGCGCTGATGCTCTCACCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302547.6546601/94‑1 (MQ=45)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302547.5052664/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302547.6703651/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCT < SRR4302547.3825212/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCC‑‑TCTCCCCCCGGGGGAGGGGGAAAACACCCAAA‑G‑CCTTCTCCTCGAGAAGGGCCTGCT > SRR4302547.2248669/1‑94 (MQ=15)
GGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTAT < SRR4302547.4523089/94‑1 (MQ=60)
GGTTAAGTGCGCGCTGCTGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATT < SRR4302547.405868/94‑1 (MQ=60)
GGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATT < SRR4302547.895682/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302547.4559902/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACGGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302547.4027872/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302547.3290853/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302547.5663915/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302547.5756713/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302547.5176235/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302547.731518/94‑1 (MQ=60)
GCGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGG < SRR4302547.2580394/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302547.5435538/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCGCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302547.6536655/94‑1 (MQ=56)
GCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302547.2958970/94‑1 (MQ=60)
GCTGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302547.1793472/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302547.3039555/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302547.282125/94‑1 (MQ=60)
CCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTA < SRR4302547.6083903/94‑1 (MQ=60)
CCTCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTA > SRR4302547.6649136/1‑94 (MQ=60)
CTCACCCCG‑‑ACCC‑‑TCTCCCCCAGGGGGAGGGAGAAAACACTC‑AAGG‑CCTTCTTCTGGAGAAAGCCTTGTTAATAGTTGCcgcaaagacccctta > SRR4302547.1553319/1‑79 (MQ=20)
TCACCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302547.2674732/94‑1 (MQ=60)
TCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302547.3045826/94‑1 (MQ=60)
TCACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302547.1039732/94‑1 (MQ=60)
CACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTGGTTGCGGTACAGCACCTTAATG > SRR4302547.2089307/1‑94 (MQ=60)
CACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302547.80582/94‑1 (MQ=60)
ACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302547.4329731/1‑94 (MQ=60)
ACCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302547.3970247/1‑94 (MQ=60)
cccccgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA < SRR4302547.6488127/85‑1 (MQ=60)
cccccgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA < SRR4302547.6273102/85‑1 (MQ=60)
CCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302547.5238099/1‑94 (MQ=60)
CCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302547.6295771/1‑94 (MQ=60)
CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302547.4753994/94‑1 (MQ=60)
cgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302547.5862786/89‑1 (MQ=60)
cgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302547.4000347/89‑1 (MQ=60)
cgaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302547.3942351/89‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.2105085/90‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.1039347/90‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.642216/90‑1 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302547.6349048/5‑94 (MQ=60)
gaccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302547.3791917/90‑1 (MQ=60)
accC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT < SRR4302547.6687241/91‑1 (MQ=60)
C‑‑C‑‑TCTCCCACCGGGAGAGGGGGAAAACACTC‑AAGG‑CCTTCTCCTGGACAATGCCTAGCTATTAGTTGCGGTACTGCACCTTAATGATGTGATAT > SRR4302547.1416436/1‑94 (MQ=60)
C‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302547.2650681/1‑94 (MQ=60)
ccC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302547.5147919/3‑94 (MQ=60)
C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302547.4015008/1‑94 (MQ=60)
C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302547.1288827/1‑94 (MQ=60)
C‑‑TCTCCAACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302547.4293631/1‑94 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC > SRR4302547.5390840/1‑94 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC > SRR4302547.1038099/1‑94 (MQ=60)
CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCG < SRR4302547.6767221/94‑1 (MQ=60)
TCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGA < SRR4302547.6266660/94‑1 (MQ=60)
CCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAA > SRR4302547.1999955/1‑94 (MQ=60)
CCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAA > SRR4302547.6106216/1‑94 (MQ=60)
CACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACT < SRR4302547.2469215/94‑1 (MQ=60)
CACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACT < SRR4302547.5592408/94‑1 (MQ=60)
CACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCCGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACT > SRR4302547.4321611/1‑94 (MQ=60)
ACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTG > SRR4302547.5112443/1‑94 (MQ=60)
ACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTG < SRR4302547.3690097/94‑1 (MQ=60)
CAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGG < SRR4302547.581049/94‑1 (MQ=60)
CAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGG > SRR4302547.5334172/1‑94 (MQ=60)
CAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGG > SRR4302547.3731211/1‑94 (MQ=60)
AGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGG < SRR4302547.4044876/94‑1 (MQ=60)
GGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACGTTAATGATGTGATATCCGAACTGGGT > SRR4302547.5469732/1‑94 (MQ=60)
GGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGGACTGGGT > SRR4302547.5700172/1‑94 (MQ=60)
GGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGT < SRR4302547.6557076/94‑1 (MQ=60)
TGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG > SRR4302547.5518131/1‑94 (MQ=60)
GGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG < SRR4302547.6178876/94‑1 (MQ=60)
GGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG > SRR4302547.3440592/1‑94 (MQ=60)
GAAGAGGGATAAAACACTC‑AAGG‑CCTAATCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG < SRR4302547.1466875/94‑1 (MQ=60)
AGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTG < SRR4302547.4041510/94‑1 (MQ=60)
AGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTG > SRR4302547.5802031/1‑94 (MQ=60)
AGAGAGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTG < SRR4302547.2085928/94‑1 (MQ=60)
GAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGC > SRR4302547.2594745/1‑94 (MQ=60)
GAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGC < SRR4302547.3633315/94‑1 (MQ=60)
GAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGACTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGC > SRR4302547.3769716/1‑94 (MQ=60)
GAGGGAGAAAACACTC‑AAGG‑CCTTCTCCAGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGC > SRR4302547.2641279/1‑94 (MQ=60)
AGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCA < SRR4302547.1510776/94‑1 (MQ=60)
AGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCA > SRR4302547.4068630/1‑94 (MQ=60)
GGGAGAAAGCACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAG > SRR4302547.2170581/1‑94 (MQ=60)
GGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAG > SRR4302547.3341315/1‑94 (MQ=60)
GGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC < SRR4302547.5500037/94‑1 (MQ=60)
GAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG < SRR4302547.4787008/94‑1 (MQ=60)
GAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG > SRR4302547.824186/1‑94 (MQ=60)
AAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC < SRR4302547.6587884/94‑1 (MQ=60)
AAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC > SRR4302547.6020852/1‑94 (MQ=60)
AAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC > SRR4302547.1479908/1‑94 (MQ=60)
AAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCC > SRR4302547.3047944/1‑94 (MQ=60)
ACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGG < SRR4302547.1188829/94‑1 (MQ=60)
CACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGT > SRR4302547.1787011/1‑94 (MQ=60)
CACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGT > SRR4302547.5678792/1‑94 (MQ=60)
CACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGG > SRR4302547.2385178/1‑94 (MQ=60)
ACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC < SRR4302547.1602265/94‑1 (MQ=60)
CTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCG > SRR4302547.6416779/1‑94 (MQ=60)
CTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCG < SRR4302547.2780261/94‑1 (MQ=60)
TC‑AAGG‑CCTTCTCCTGGAGATGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG > SRR4302547.6639410/1‑94 (MQ=60)
C‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC < SRR4302547.3766094/94‑1 (MQ=60)
C‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC < SRR4302547.1337291/94‑1 (MQ=60)
C‑AA‑GCCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC < SRR4302547.6366764/94‑1 (MQ=60)
aagG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCC > SRR4302547.5209881/4‑94 (MQ=60)
aagG‑CCTTCTCCTGGAGAAGGCCTTACTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT > SRR4302547.3473532/4‑94 (MQ=60)
AG‑G‑CCTGCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTC < SRR4302547.301031/94‑1 (MQ=60)
G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA < SRR4302547.1798353/94‑1 (MQ=60)
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GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957033‑3957217
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
