Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,551 |
+T |
intergenic (‑120/‑741) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,550 | 1 | . | T | 98.5%
| 498.5
/ ‑0.3
| 138 | intergenic (‑119/‑742) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base T (60/75); total (63/75) |
| Fisher's exact test for biased strand distribution p-value = 2.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 |
Only 100 of 139 total aligned reads displayed.
TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > NC_000913/3957470‑3957627
|
tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑c‑c < 1:4646966/93‑1 (MQ=255)
cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑c‑cctc > 2:4558835/1‑90 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑c‑cctca < 1:3594481/93‑5 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAgg < 1:826261/93‑1 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAgg < 1:151896/93‑1 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAggg > 2:4325677/1‑93 (MQ=255)
tCCGCAGATGCTAACATAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAggg > 2:2895915/1‑93 (MQ=255)
ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAgggg < 2:5923120/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGga < 2:3388717/93‑1 (MQ=255)
aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGaaaa > 1:308986/1‑93 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAAc > 2:4544786/1‑93 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAAc > 1:2605310/1‑93 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACt > 1:2938992/1‑93 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CGTCGCAGGTCC‑CTCAAGGGGAGAAAACt > 2:1293094/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg < 1:1018440/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg > 1:1900277/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg < 2:1925912/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTCGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAgg < 1:3201179/93‑1 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGc > 1:3249213/1‑93 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGc < 2:1798259/93‑1 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑CTCTCAAGGGGAGAAAACTTAGGGc > 1:3443540/1‑93 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc < 2:5958304/93‑1 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc > 2:1670348/1‑93 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc < 1:1056185/93‑1 (MQ=255)
aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCct < 2:6071234/93‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc < 2:4959993/93‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc < 2:1815027/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:3506523/93‑1 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATg < 1:1129571/93‑1 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:828683/1‑93 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:1298989/1‑93 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:1197914/1‑93 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg < 1:521336/93‑1 (MQ=255)
agtcagGGAGTGGCTGACACATATATGGCAAAACCCCTGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg < 2:2739448/93‑1 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt > 2:1566262/1‑93 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt > 1:4757245/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGGGAAAACTTAGGGCCCCCATggggtcc > 2:1508563/1‑89 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:4052741/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 2:2358848/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 1:619340/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 2:1508564/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:1727812/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:4555456/1‑93 (MQ=255)
ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa < 2:3183266/93‑1 (MQ=255)
ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑G‑GGCC‑TCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 2:5165397/1‑93 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:585246/93‑1 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 1:5480111/93‑1 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 1:4886800/93‑1 (MQ=255)
aGTGGCTGGTACATATAAGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 1:1996586/93‑1 (MQ=255)
gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 1:3299215/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:4814745/1‑93 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt < 1:2671362/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:907817/93‑1 (MQ=255)
tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 1:1533937/1‑93 (MQ=255)
tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 1:4211893/1‑93 (MQ=255)
tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 1:5584220/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTTTATGGGCTACAAAGTCATTAt < 1:4971884/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:5958066/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:2162068/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGAAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:2561476/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 1:255486/1‑93 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 2:1131429/1‑93 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:3238432/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 1:3562583/1‑93 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGAGCCTCTATGGGCTACAAAGTCATTATc > 2:235248/1‑93 (MQ=255)
tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg < 1:4456508/93‑1 (MQ=255)
tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg > 2:4773745/1‑93 (MQ=255)
tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg < 2:4320497/93‑1 (MQ=255)
cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 2:2286091/1‑93 (MQ=255)
cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 1:5961297/1‑93 (MQ=255)
atatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:5810927/1‑93 (MQ=255)
atatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:3787/1‑93 (MQ=255)
atatatGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 2:802404/1‑93 (MQ=255)
tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 1:686916/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 1:5811190/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 1:3881312/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:260567/1‑93 (MQ=255)
atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:3942384/93‑1 (MQ=255)
atagGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:158199/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAACGTCATTATCGGGGATg > 2:307469/1‑93 (MQ=255)
tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 2:5639335/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 1:5699089/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 2:651666/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 1:6090494/93‑1 (MQ=255)
gCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 1:870907/93‑1 (MQ=255)
gCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 1:3366842/93‑1 (MQ=255)
aaaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:2762356/1‑93 (MQ=255)
aaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 2:417131/93‑1 (MQ=255)
aaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt < 2:3318719/93‑1 (MQ=255)
aaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt > 1:3605180/1‑93 (MQ=255)
aGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta > 2:5262722/1‑93 (MQ=255)
gCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 2:3086145/1‑93 (MQ=255)
gCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 2:2094205/1‑93 (MQ=255)
gCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat < 2:1168370/93‑1 (MQ=255)
cccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt > 1:469397/1‑93 (MQ=255)
cccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:1553052/93‑1 (MQ=255)
ccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:560076/1‑93 (MQ=255)
ccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 2:1736995/93‑1 (MQ=255)
ccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 2:3791210/93‑1 (MQ=255)
cGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt < 1:2959575/93‑1 (MQ=255)
|
TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > NC_000913/3957470‑3957627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCTG‑‑CTCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > NC_000913/3957478‑3957642
|
TCCGCAAATGCAAACGTAATGGCCAGCCAGGGAGTGGCTGGTAAATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGG < SRR4302532.1565089/94‑1 (MQ=34)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAG < SRR4302532.5422281/94‑1 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCCAGGGGAGAAA > SRR4302532.175324/1‑94 (MQ=60)
GATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAA > SRR4302532.319700/1‑94 (MQ=60)
ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAAC > SRR4302532.2692445/1‑94 (MQ=60)
ATGCTAACGTAATGGTCAGTCGGGGAGTGGCTGGTACATATAGGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAAC < SRR4302532.3712800/94‑1 (MQ=57)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACT > SRR4302532.3036606/1‑94 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAG > SRR4302532.1963294/1‑94 (MQ=60)
AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGG < SRR4302532.1052998/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTCGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGG < SRR4302532.3307454/94‑1 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGC > SRR4302532.3357094/1‑94 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGT‑CTCTCAAGGGGAGAAAACTTAGGGC > SRR4302532.3558911/1‑94 (MQ=60)
TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCT < SRR4302532.1091780/94‑1 (MQ=60)
TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCT < SRR4302532.797056/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAT < SRR4302532.36448/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAT < SRR4302532.2961952/94‑1 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATG < SRR4302532.3831612/94‑1 (MQ=60)
TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGG < SRR4302532.1167266/94‑1 (MQ=60)
AGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGC < SRR4302532.539546/94‑1 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT > SRR4302532.4920009/1‑94 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302532.4626818/94‑1 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT > SRR4302532.3399002/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302532.4189080/1‑94 (MQ=60)
AGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACA < SRR4302532.640927/94‑1 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG < SRR4302532.5670115/94‑1 (MQ=60)
atgggaTGGTACATATATGGCAAAAGCCGGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGT < SRR4302532.754152/88‑1 (MQ=60)
AGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGT < SRR4302532.5054761/94‑1 (MQ=60)
AGTGGCTGGTACATATAAGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGT < SRR4302532.2063092/94‑1 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC < SRR4302532.3408990/94‑1 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC > SRR4302532.4980533/1‑94 (MQ=60)
GCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATT < SRR4302532.2761018/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA > SRR4302532.4353268/1‑94 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA > SRR4302532.4907254/1‑94 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA < SRR4302532.938826/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA > SRR4302532.1585766/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302532.6115746/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT < SRR4302532.5778083/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTTTATGGGCTACAAAGTCATTATC < SRR4302532.5142330/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC > SRR4302532.264363/1‑94 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302532.6164139/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302532.2757391/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC > SRR4302532.3681776/1‑94 (MQ=60)
GGTACATATATGGCAAAAGCCCGAAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302532.2646935/94‑1 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG > SRR4302532.5137121/1‑94 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG < SRR4302532.4608406/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG > SRR4302532.6167455/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG > SRR4302532.3944/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG > SRR4302532.6012801/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302532.4105087/94‑1 (MQ=60)
TATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT < SRR4302532.4012325/94‑1 (MQ=60)
TATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT < SRR4302532.6013074/94‑1 (MQ=60)
TATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT < SRR4302532.710480/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302532.3264911/94‑1 (MQ=60)
TGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT < SRR4302532.5897878/94‑1 (MQ=60)
TGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT < SRR4302532.6300765/94‑1 (MQ=60)
GCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302532.3479377/94‑1 (MQ=60)
GCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302532.900730/94‑1 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302532.2855111/1‑94 (MQ=60)
AAAGCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT > SRR4302532.3725681/1‑94 (MQ=60)
GCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT > SRR4302532.2583028/1‑94 (MQ=60)
GCCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT > SRR4302532.485748/1‑94 (MQ=60)
CCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302532.1605565/94‑1 (MQ=60)
CCCGGAAAATCCGGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302532.579600/1‑94 (MQ=60)
cggaaaatccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC < SRR4302532.3057609/79‑1 (MQ=60)
ggaaaatccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA > SRR4302532.1583036/15‑94 (MQ=60)
aaatccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT < SRR4302532.5586381/83‑1 (MQ=60)
aaatccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302532.5299622/12‑94 (MQ=60)
aatccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT > SRR4302532.5830244/11‑94 (MQ=60)
atccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302532.2379702/10‑94 (MQ=60)
atccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302532.4636875/10‑94 (MQ=60)
tccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT < SRR4302532.6179839/86‑1 (MQ=60)
tccgggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT < SRR4302532.5368813/86‑1 (MQ=60)
gggctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302532.5038049/89‑1 (MQ=60)
ctTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302532.839555/3‑94 (MQ=60)
TTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > SRR4302532.1792266/1‑94 (MQ=60)
TTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT < SRR4302532.2512962/94‑1 (MQ=60)
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TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCTG‑‑CTCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > NC_000913/3957478‑3957642
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
