Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,551 |
+T |
intergenic (‑120/‑741) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,550 | 1 | . | T | 99.4%
| 650.2
/ ‑4.0
| 170 | intergenic (‑119/‑742) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (72/97); total (72/98) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 177 total aligned reads displayed.
TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑T‑GC‑TCGCA‑GG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > NC_000913/3957470‑3957627
|
tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGGCTTCGCA‑GG‑T‑cc < 2:3319656/93‑1 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑T‑ccct > 2:5822176/1‑91 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑T‑ccct > 2:4225164/1‑91 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCCGAAAAT‑CCGG‑GCTTCGCA‑GG‑T‑ccct > 1:323291/1‑91 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAgg < 2:3847279/93‑1 (MQ=255)
ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAgggg < 2:2364591/93‑1 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGgag > 2:6262039/1‑93 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGgag < 2:2199789/93‑1 (MQ=255)
cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGGAAAAGACCGGAAAATACG‑G‑GCTTCGCA‑GGTT‑CCTCCAGGGgaga > 2:6163289/1‑93 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGaa > 2:4070328/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGaaa > 2:1968274/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGaaa > 1:5733049/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TGCCTCAAGGGGAGaaa > 1:2211306/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGGAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGaaa > 2:3532283/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGaaa > 1:6114505/1‑93 (MQ=255)
aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGGCCGGAAAAT‑CCGG‑GCTTCGCAGGG‑C‑CCTCAAGGGGAGaaaa > 2:3897634/1‑93 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACt > 1:3254232/1‑93 (MQ=255)
gCTAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAATT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACt < 1:5724125/93‑1 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACtt < 1:1006674/93‑1 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACtt > 2:634484/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAg > 2:2327016/1‑93 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAgg < 2:3469925/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAgg < 2:1380534/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAgg < 2:452886/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGGCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAgg < 1:1552228/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGGGGCTGGTACATATTTGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAgg > 2:4970438/1‑93 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGc > 2:5094879/1‑93 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGc < 2:6047281/93‑1 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGc > 2:5982183/1‑93 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 1:6150071/93‑1 (MQ=255)
ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCctct < 1:2201271/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:252039/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4565961/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4297666/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 1:5604708/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGGCTTCGCA‑GG‑TCCCTCAAGGGAAGAAAACTTAGGGCCTCTa < 1:6462484/93‑1 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg > 1:1915604/1‑93 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg < 1:5762937/93‑1 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑TGGCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg < 1:6604630/93‑1 (MQ=255)
cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg > 2:2909991/1‑93 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 1:1742818/1‑93 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCCAGGGGAGAAAACTTAGGGCCTCTATGGGCTa > 1:3905186/1‑93 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa > 1:6577824/1‑93 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:334794/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:6528463/1‑93 (MQ=255)
ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGGCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 2:6578645/1‑93 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg > 1:4474624/1‑93 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 2:5423239/93‑1 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 1:809175/93‑1 (MQ=255)
tgtcTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:452672/90‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:6320086/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 1:2713098/1‑93 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 2:4313549/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 2:3135399/1‑93 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt < 2:480234/93‑1 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt < 2:821177/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 2:1322165/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt > 1:6204728/1‑93 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:5292589/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:2424980/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:531511/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGGCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt > 1:1097349/1‑93 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:5535285/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:6354216/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:1065107/93‑1 (MQ=255)
aCATATATGGCAAAAGCGGGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:3578502/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:710739/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:5802184/93‑1 (MQ=255)
cATATATGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:551623/93‑1 (MQ=255)
atatatGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:546043/93‑1 (MQ=255)
atatatGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:1319584/1‑93 (MQ=255)
atatatGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:1635327/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 2:3270969/93‑1 (MQ=255)
atatGGAAAAGCCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:1176514/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 2:3659506/1‑93 (MQ=255)
tatGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 1:3740304/1‑93 (MQ=255)
tatGGCAAAAGCCAAGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:1038765/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 1:4952285/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:5288288/1‑93 (MQ=255)
ggCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt < 2:3382569/93‑1 (MQ=255)
ggCAAAAGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt < 2:2395126/93‑1 (MQ=255)
gCAAAAGCGCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 1:5123981/93‑1 (MQ=255)
cAAAAGCCGGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat < 1:5639361/93‑1 (MQ=255)
aaaGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 2:3702638/93‑1 (MQ=255)
aaaGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 1:3340570/1‑93 (MQ=255)
aaaGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 2:1696983/93‑1 (MQ=255)
aGCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:1537819/93‑1 (MQ=255)
gCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat < 2:3820092/93‑1 (MQ=255)
gCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat < 1:1461317/93‑1 (MQ=255)
gCCCGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 2:4048752/1‑93 (MQ=255)
gCCCGGAAAAT‑CC‑GGGCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttcttttat > 2:2087674/1‑93 (MQ=255)
cccGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 2:5189173/93‑1 (MQ=255)
cccGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:2857910/93‑1 (MQ=255)
ccGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 1:5901757/93‑1 (MQ=255)
ccGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 2:1126912/1‑93 (MQ=255)
ccGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:4112769/1‑93 (MQ=255)
ccGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 1:3376220/93‑1 (MQ=255)
ccGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 2:2736385/1‑93 (MQ=255)
cGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt < 1:2284446/93‑1 (MQ=255)
cGGAAAAT‑CCGG‑GCTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGCCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt > 2:6219200/1‑93 (MQ=255)
|
TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑T‑GC‑TCGCA‑GG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > NC_000913/3957470‑3957627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > NC_000913/3957478‑3957642
|
TCTGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG < SRR4302547.893775/94‑1 (MQ=60)
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG < SRR4302547.2624105/94‑1 (MQ=60)
TCCGCAGATACTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG < SRR4302547.6732944/94‑1 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAG < SRR4302547.3197504/94‑1 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAA > SRR4302547.5894955/1‑94 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCCAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAA > SRR4302547.2309566/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302547.5662170/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302547.5851493/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATCC‑‑GGGCTTCGCAGGTGCCTCAAGGGGAGAAA > SRR4302547.2255773/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302547.6241343/1‑94 (MQ=60)
AGATCCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGCCAAAACCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA < SRR4302547.3930913/94‑1 (MQ=57)
ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAAC < SRR4302547.1658572/94‑1 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACT > SRR4302547.3319253/1‑94 (MQ=60)
GCTAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAATTCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTT < SRR4302547.5842366/94‑1 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTA < SRR4302547.1026327/94‑1 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTA > SRR4302547.4670195/1‑94 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG < SRR4302547.1583123/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG < SRR4302547.6745386/94‑1 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGTC‑‑TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGC < SRR4302547.2087495/94‑1 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302547.6277668/94‑1 (MQ=60)
TTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTA < SRR4302547.2245494/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT < SRR4302547.5720335/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGAAGAAAACTTAGGGCCTCTAT < SRR4302547.6597061/94‑1 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG > SRR4302547.1953503/1‑94 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG > SRR4302547.3411460/1‑94 (MQ=60)
TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG < SRR4302547.6742115/94‑1 (MQ=60)
TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG < SRR4302547.5882116/94‑1 (MQ=60)
AGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGC > SRR4302547.1777130/1‑94 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302547.418542/94‑1 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCCAGGGGAGAAAACTTAGGGCCTCTATGGGCTA > SRR4302547.3984597/1‑94 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA > SRR4302547.6714792/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302547.5425470/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302547.1865986/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302547.6664352/1‑94 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG > SRR4302547.4567070/1‑94 (MQ=60)
AGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGT < SRR4302547.824506/94‑1 (MQ=60)
TGTCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.461064/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.5750849/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.3389640/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA > SRR4302547.3571968/1‑94 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.6095717/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.6451498/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA > SRR4302547.2767560/1‑94 (MQ=60)
GGCTGTTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT < SRR4302547.5880042/94‑1 (MQ=60)
GCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATT > SRR4302547.6333544/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302547.1119370/1‑94 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302547.5401775/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302547.6580279/94‑1 (MQ=60)
GTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG < SRR4302547.5649525/94‑1 (MQ=60)
ACATATATGGCAAAAGCGGGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG < SRR4302547.3651497/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG < SRR4302547.582220/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG > SRR4302547.1346109/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302547.561569/94‑1 (MQ=60)
aaaataggcaaaacccgagaaaacgcggcgctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302547.3776121/62‑1 (MQ=60)
TATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT < SRR4302547.6310699/94‑1 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG > SRR4302547.3816666/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG < SRR4302547.1489071/94‑1 (MQ=60)
TATGGCAAAAGCCAAGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302547.1059235/94‑1 (MQ=60)
TGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT < SRR4302547.5054815/94‑1 (MQ=60)
GCAAAAGCGCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302547.5229566/94‑1 (MQ=60)
GCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302547.6373442/94‑1 (MQ=60)
CAAAAGCCGGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT < SRR4302547.5755769/94‑1 (MQ=60)
CAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302547.5315208/1‑94 (MQ=60)
AAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT > SRR4302547.3408177/1‑94 (MQ=60)
GCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT < SRR4302547.1295538/94‑1 (MQ=60)
GCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT < SRR4302547.1490522/94‑1 (MQ=60)
CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302547.5211032/1‑94 (MQ=60)
CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302547.2915016/94‑1 (MQ=60)
CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302547.4196356/1‑94 (MQ=60)
CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT < SRR4302547.3444816/94‑1 (MQ=60)
CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > SRR4302547.1083137/1‑94 (MQ=60)
CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT < SRR4302547.6023972/94‑1 (MQ=60)
cccggaaaacccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302547.4733827/77‑1 (MQ=60)
cggaaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC < SRR4302547.4494477/79‑1 (MQ=60)
cggaaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC < SRR4302547.2330696/79‑1 (MQ=60)
aaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT < SRR4302547.5547372/82‑1 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302547.2273568/12‑94 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302547.4248796/12‑94 (MQ=60)
aatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT > SRR4302547.3213984/11‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.5919864/10‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.6027145/10‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.2578655/10‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.658942/10‑94 (MQ=60)
tccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTCCAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT < SRR4302547.818871/86‑1 (MQ=60)
ccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302547.3189580/87‑1 (MQ=60)
ccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302547.3942036/87‑1 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA < SRR4302547.372754/88‑1 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA < SRR4302547.856765/88‑1 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA > SRR4302547.3758275/7‑94 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA > SRR4302547.364942/7‑94 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302547.2672527/91‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302547.333348/91‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302547.1812908/91‑1 (MQ=60)
ctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA < SRR4302547.4363651/92‑1 (MQ=60)
ctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302547.5832699/3‑94 (MQ=60)
TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT < SRR4302547.6115480/94‑1 (MQ=60)
TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT < SRR4302547.1081097/94‑1 (MQ=60)
|
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > NC_000913/3957478‑3957642
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
