Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,525 |
+G |
intergenic (+92/‑141) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,524 | 1 | . | G | 99.5%
| 778.0
/ ‑3.8
| 212 | intergenic (+91/‑142) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (93/118); total (93/119) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 226 total aligned reads displayed.
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑GCTGCATTATGGGCAGTG‑GCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTT > NC_000913/4008434‑4008611
|
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 2:586952/1‑93 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 1:3757978/1‑93 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 2:1862944/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg < 2:5056962/93‑2 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 1:5895954/1‑91 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg < 1:3115705/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 2:3514420/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 1:6046519/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 1:3436527/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 2:2245207/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 1:5366060/1‑93 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 2:5156872/1‑93 (MQ=255)
cgCCGAAATGCTGTAGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg > 2:3286360/1‑93 (MQ=255)
gCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGt < 1:4745399/93‑1 (MQ=255)
cGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc < 1:3296422/93‑1 (MQ=255)
gAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGGAGTGATTGGTACt > 2:2659482/1‑93 (MQ=255)
gAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:5539366/1‑93 (MQ=255)
gAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:4442388/1‑93 (MQ=255)
aaaTGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGATGGAAGTGATTGGTACTa < 1:265504/93‑1 (MQ=255)
aaTGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 2:421874/93‑1 (MQ=255)
aaTGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 1:3216533/93‑1 (MQ=255)
tGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg > 1:1075907/1‑93 (MQ=255)
cTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 1:4431194/93‑1 (MQ=255)
tGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 2:4618886/1‑93 (MQ=255)
tGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 2:1670387/1‑93 (MQ=255)
tCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac < 2:2862580/93‑1 (MQ=255)
tCGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac > 1:4265501/1‑93 (MQ=255)
cGATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACATTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacg < 1:1943809/93‑1 (MQ=255)
gATGGCGGGGAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 2:1259547/93‑1 (MQ=255)
aTGGCGGGGAAATGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 1:4075087/93‑1 (MQ=255)
gcggggAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGCAGTGATTGGTACTAATGCCGACGAcgcg > 1:437965/4‑93 (MQ=255)
cggggAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCgg < 2:4466181/91‑1 (MQ=255)
gggAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTg > 1:5671564/1‑93 (MQ=255)
gggAAAGGCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTg > 2:4813301/1‑93 (MQ=255)
aaggCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGc > 2:3725327/4‑93 (MQ=255)
ggCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAt > 1:4294131/2‑93 (MQ=255)
ggCTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAt < 2:5841925/92‑1 (MQ=255)
cTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTa < 1:5218446/93‑1 (MQ=255)
cTGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTa < 2:378179/93‑1 (MQ=255)
tGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAt > 1:50387/1‑93 (MQ=255)
tGCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAt > 1:2636307/1‑93 (MQ=255)
gCATTATGGGCAGTG‑CGCACCAGCTTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:1657154/93‑1 (MQ=255)
gCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:1804050/93‑1 (MQ=255)
gCATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:1054860/93‑1 (MQ=255)
cATTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCt < 2:199396/93‑1 (MQ=255)
aTTATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTg < 2:3180641/93‑1 (MQ=255)
ttATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 2:1325476/93‑1 (MQ=255)
ttATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 2:578551/93‑1 (MQ=255)
ttATGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 2:2064120/93‑1 (MQ=255)
aTGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt > 2:2884237/1‑93 (MQ=255)
aTGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt > 2:4701548/1‑93 (MQ=255)
tGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTa > 2:6102919/1‑93 (MQ=255)
tGGGCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTa < 1:1532337/93‑1 (MQ=255)
gggCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaa < 2:565397/93‑1 (MQ=255)
gggCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaa < 2:3571405/93‑1 (MQ=255)
ggCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaaa < 2:1733544/93‑1 (MQ=255)
gCAGTGCGCCA‑CAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGGGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAGCTGCGTAAAc < 2:4992450/93‑1 (MQ=255)
gCAGTG‑CGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAc < 1:4625793/93‑1 (MQ=255)
tgcgcaccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTa < 2:5694600/89‑1 (MQ=255)
tgcgcaccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTa < 2:2641499/89‑1 (MQ=255)
gcgcaccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTAt < 1:236597/90‑1 (MQ=255)
gcgcaccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTAt < 2:3156311/90‑1 (MQ=255)
cgcaccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATTCCGACGACGCGGTGCCGCATTATCTGCCTAAACTCTAtt < 1:3939032/91‑1 (MQ=255)
cgcaccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTAtt < 2:4092392/91‑1 (MQ=255)
gcaccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTAttt > 1:5243789/2‑93 (MQ=255)
caccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTa > 2:290228/1‑93 (MQ=255)
accaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTAt > 2:1380521/1‑93 (MQ=255)
accaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTAt > 1:3706251/1‑93 (MQ=255)
ccaGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATc < 2:2730702/93‑1 (MQ=255)
caGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCg < 1:2336717/93‑1 (MQ=255)
caGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCg < 1:756821/93‑1 (MQ=255)
caGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCg < 1:2737331/93‑1 (MQ=255)
aGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGt < 1:2465437/93‑1 (MQ=255)
aGCGTCTGAAAGACCTTCATCCCAAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGt < 1:3496023/93‑1 (MQ=255)
tCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATc > 2:5322428/1‑93 (MQ=255)
tGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCGTTATCTGCGTAAACTCTATTTATCGTAATCGt > 1:2130069/1‑93 (MQ=255)
tGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGt < 2:4429242/93‑1 (MQ=255)
gAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGtt < 2:669065/93‑1 (MQ=255)
aaGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCt > 2:102552/1‑93 (MQ=255)
gACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCttt > 1:4973673/1‑93 (MQ=255)
gccTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTa < 1:199993/92‑1 (MQ=255)
aCCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCtttt > 1:1338238/1‑92 (MQ=255)
aCCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTa > 1:5664517/1‑93 (MQ=255)
aCCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTa < 2:3979491/93‑1 (MQ=255)
ccTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTAt > 2:5275133/1‑93 (MQ=255)
cTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTAtt < 2:5434551/93‑1 (MQ=255)
ttCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTAttt < 1:5519001/93‑1 (MQ=255)
ttCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTAttt > 2:71557/1‑93 (MQ=255)
ttCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTAttt < 1:1421330/93‑1 (MQ=255)
aTCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGt > 2:822681/1‑93 (MQ=255)
tCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTc > 1:5760602/1‑93 (MQ=255)
tCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTc > 1:831437/1‑93 (MQ=255)
ccGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTTGTCAg > 1:1107226/1‑93 (MQ=255)
ccGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAg < 2:3613299/93‑1 (MQ=255)
cGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGt < 2:4951605/93‑1 (MQ=255)
gAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGtt > 1:1169175/1‑93 (MQ=255)
gAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGtt < 1:2196420/93‑1 (MQ=255)
gAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGtt > 2:2118847/1‑93 (MQ=255)
gAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGtt < 2:2393153/93‑1 (MQ=255)
gAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGtt < 2:2605485/93‑1 (MQ=255)
|
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑GCTGCATTATGGGCAGTG‑GCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTT > NC_000913/4008434‑4008611
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGGATGAACGACGCCGAAATGCTGTCGATGGCGGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTCAACC > NC_000913/4008434‑4008618
|
CGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G > SRR4302532.3884390/1‑94 (MQ=60)
GGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑GA > SRR4302532.6100133/1‑94 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAG < SRR4302532.4545861/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGT < SRR4302532.3860643/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaagg > SRR4302532.5622897/1‑89 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA > SRR4302532.654059/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA > SRR4302532.6255297/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA < SRR4302532.3219091/94‑1 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA < SRR4302532.3219090/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG > SRR4302532.5552052/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG < SRR4302532.3551671/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG < SRR4302532.1431018/94‑1 (MQ=60)
ACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCCCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGG > SRR4302532.1567350/1‑94 (MQ=60)
GCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTA < SRR4302532.4907532/94‑1 (MQ=60)
CGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACT > SRR4302532.1318972/1‑94 (MQ=60)
CGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACT < SRR4302532.3406113/94‑1 (MQ=60)
AAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGATGG‑AAGTGATTGGTACTAA < SRR4302532.274699/94‑1 (MQ=60)
AGTGCGGTCGATGGCGGGGAAAG‑GCTGCATTAGGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.1943645/94‑1 (MQ=55)
AATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.5863735/94‑1 (MQ=60)
AATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.3323340/94‑1 (MQ=60)
actgctctcgaaggcggggaaaggctgcattatgggcacagtgctCCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggtagagattggcattaat > SRR4302532.1928862/46‑76 (MQ=60)
ATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATG > SRR4302532.1112014/1‑94 (MQ=60)
GCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCC > SRR4302532.4025301/1‑94 (MQ=60)
CTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG > SRR4302532.276432/1‑94 (MQ=60)
CTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG > SRR4302532.113855/1‑94 (MQ=60)
CTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG < SRR4302532.4582177/94‑1 (MQ=60)
GTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGAC > SRR4302532.4409077/1‑94 (MQ=60)
CGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACATTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGA < SRR4302532.2008440/94‑1 (MQ=60)
ATGGCGGGGAAAT‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACG < SRR4302532.4211934/94‑1 (MQ=60)
ATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACG > SRR4302532.1186906/1‑94 (MQ=60)
TGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGC < SRR4302532.1597536/94‑1 (MQ=60)
GGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑CAGTGATTGGTACTAATGCCGACGACGCG > SRR4302532.453132/1‑94 (MQ=60)
GGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GTAAGTGATTGGTACTAATGCCGACGACGCG < SRR4302532.5227900/94‑1 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGT < SRR4302532.6064615/85‑1 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTG > SRR4302532.5869389/9‑94 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTG > SRR4302532.3788204/9‑94 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCC < SRR4302532.2429934/94‑1 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302532.4493233/1‑94 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302532.233087/1‑94 (MQ=60)
AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGCGATTGGTACTAATGCCGACGACGCGGTGCCGC > SRR4302532.5649317/1‑94 (MQ=60)
AG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAT > SRR4302532.4439144/1‑94 (MQ=60)
AG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAT < SRR4302532.1222949/94‑1 (MQ=60)
G‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATT > SRR4302532.2716516/1‑94 (MQ=60)
G‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATT > SRR4302532.4924181/1‑94 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT < SRR4302532.5398418/94‑1 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT > SRR4302532.2724656/1‑94 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT > SRR4302532.52173/1‑94 (MQ=60)
TGCATTATGGGCAGTGCGCACCAGCGTCTGAAATACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATC < SRR4302532.517196/94‑1 (MQ=60)
TGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATC > SRR4302532.2055866/1‑94 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCTTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1713311/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.593047/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1090421/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT > SRR4302532.972504/1‑94 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1690892/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1864271/94‑1 (MQ=60)
ggtaatggggaatgcgCACCAACGTCTGAAAGACCTTCATCCCGAGATGG‑AAGTGAGTGGTACGAATGCCGACGGCGCGGTGCCGCATTATCTG < SRR4302532.4809271/78‑1 (MQ=52)
CATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTG < SRR4302532.5147060/94‑1 (MQ=60)
CATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTG < SRR4302532.5593105/94‑1 (MQ=60)
ATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGC > SRR4302532.3556965/1‑94 (MQ=60)
TTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCG < SRR4302532.3357433/94‑1 (MQ=60)
TTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCG < SRR4302532.2647698/94‑1 (MQ=60)
TGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAA < SRR4302532.1584105/94‑1 (MQ=60)
GGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAA < SRR4302532.4870998/94‑1 (MQ=60)
GGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAGAC > SRR4302532.4433509/1‑94 (MQ=60)
GCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACT < SRR4302532.4783514/94‑1 (MQ=60)
CAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTC < SRR4302532.1858795/94‑1 (MQ=60)
AGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT > SRR4302532.4777006/1‑94 (MQ=60)
tgcgCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTAT < SRR4302532.4096598/90‑1 (MQ=60)
gcgCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATT < SRR4302532.244734/91‑1 (MQ=60)
cgCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATTCCGACGACGCGGTGCCGCATTATCTGCCTAAACTCTATTT < SRR4302532.4071763/92‑1 (MQ=60)
cgCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTT > SRR4302532.5424553/3‑94 (MQ=60)
cgCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTT < SRR4302532.3163242/92‑1 (MQ=60)
GCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTA < SRR4302532.2240047/94‑1 (MQ=60)
CACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTAT > SRR4302532.3830673/1‑94 (MQ=60)
ACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATC > SRR4302532.220431/1‑94 (MQ=60)
CAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGT < SRR4302532.782760/94‑1 (MQ=60)
CAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGT < SRR4302532.2414559/94‑1 (MQ=60)
CAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGT > SRR4302532.1756343/1‑94 (MQ=60)
CAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGT < SRR4302532.2829328/94‑1 (MQ=60)
AGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTA < SRR4302532.2737611/94‑1 (MQ=60)
AGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTA < SRR4302532.2547499/94‑1 (MQ=60)
AGCGTCTGAAAGACCTTCATCCCAAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTA < SRR4302532.3613148/94‑1 (MQ=60)
GTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATC < SRR4302532.4383499/94‑1 (MQ=60)
TCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCG < SRR4302532.620060/94‑1 (MQ=60)
CTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCGTTATCTGCGTAAACTCTATTTATCGTAATCGT > SRR4302532.2201219/1‑94 (MQ=60)
GAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTGTATTTATCGTAATCGTTC > SRR4302532.2541494/1‑94 (MQ=60)
AGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTT < SRR4302532.2103090/94‑1 (MQ=60)
AGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTT > SRR4302532.5144172/1‑94 (MQ=60)
AGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTT > SRR4302532.4576705/1‑94 (MQ=60)
GACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTT > SRR4302532.1382987/1‑94 (MQ=60)
GACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTA > SRR4302532.1161010/1‑94 (MQ=60)
GACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTA > SRR4302532.5861951/1‑94 (MQ=60)
GCCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTAT < SRR4302532.206821/94‑1 (MQ=60)
ACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTAT < SRR4302532.36440/94‑1 (MQ=60)
CCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATT < SRR4302532.1098582/94‑1 (MQ=60)
CTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAACCTCTATTTATCGTAATCGTTCTTTATTT < SRR4302532.5811335/94‑1 (MQ=60)
TTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTG < SRR4302532.5710524/94‑1 (MQ=60)
TTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTG < SRR4302532.1469041/94‑1 (MQ=60)
TTCATCCCGAGCTGG‑AAGGGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTG < SRR4302532.5488076/94‑1 (MQ=60)
CATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGT < SRR4302532.6007852/94‑1 (MQ=60)
CATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGT < SRR4302532.1017007/94‑1 (MQ=60)
CATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTCATCGTAATCGTTCTTTATTTGGT < SRR4302532.4126341/94‑1 (MQ=60)
ATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTC > SRR4302532.859924/1‑94 (MQ=60)
ATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTC > SRR4302532.4631738/1‑94 (MQ=60)
ATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTC > SRR4302532.5961093/1‑94 (MQ=60)
ATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTC > SRR4302532.84083/1‑94 (MQ=60)
ATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTC > SRR4302532.3267064/1‑94 (MQ=60)
ATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTC > SRR4302532.3515270/1‑94 (MQ=60)
ATCCCGAGCTGG‑AAGTGATTCGTTCTCATGCCGGCGCCGCGGAGCCGCATTCTCTGCGTAAGCTCTATTTATCGTAATCGTTGTTTATTTGGca > SRR4302532.859923/1‑92 (MQ=32)
CCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTTGTCAG > SRR4302532.1144239/1‑94 (MQ=60)
CCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGT < SRR4302532.5413181/94‑1 (MQ=60)
CGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTT > SRR4302532.1208239/1‑94 (MQ=60)
GAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTG < SRR4302532.2269573/94‑1 (MQ=60)
AGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGT > SRR4302532.4611870/1‑94 (MQ=60)
GCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTC < SRR4302532.2850493/94‑1 (MQ=60)
GCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTC > SRR4302532.1527579/1‑94 (MQ=60)
ctgG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTCA > SRR4302532.5539738/4‑94 (MQ=60)
ctgG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTA‑TTGGTCAGTTGTCAA < SRR4302532.685611/91‑1 (MQ=60)
G‑G‑AAGTTATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTCAAC < SRR4302532.3287796/94‑1 (MQ=60)
G‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTCAAC < SRR4302532.1979285/94‑1 (MQ=60)
G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGTGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTCAACC < SRR4302532.3156573/94‑1 (MQ=60)
|
CGGGATGAACGACGCCGAAATGCTGTCGATGGCGGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTATTTATCGTAATCGTTCTTTATTTGGTCAGTTGTCAACC > NC_000913/4008434‑4008618
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
