Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,156,159	A→G	T31A (ACG→GCG)	oxyR →	OxyR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,156,159	0	A	G	100.0%	763.7 / NA	213	T31A (ACG→GCG)	oxyR	OxyR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (104/109); total (104/109)

Only 100 of 228 total aligned reads displayed.

TAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCG  >  NC_000913/4156067‑4156248

tAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGa                                                                                           >  2:3956080/1‑93 (MQ=255)

  aTGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCg                                                                                         >  1:5802609/1‑93 (MQ=255)

   tGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGgcgc                                                                                        <  2:434237/93‑1 (MQ=255)

   tGAATATTCGTGATCTTGAGTACCTGGGGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGgcgc                                                                                        >  1:556420/1‑93 (MQ=255)

    gAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGCACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCt                                                                                       <  2:3399422/93‑1 (MQ=255)

     aaTATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCtt                                                                                      >  2:158983/1‑93 (MQ=255)

      atatTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTa                                                                                     <  1:5208529/93‑1 (MQ=255)

       tatTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAg                                                                                    >  1:2962794/1‑93 (MQ=255)

       tatTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAg                                                                                    <  2:19595/93‑1 (MQ=255)

        atTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGc                                                                                   <  1:4880973/93‑1 (MQ=255)

         ttCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCg                                                                                  >  1:6133072/1‑93 (MQ=255)

         ttCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCg                                                                                  <  2:5232403/93‑1 (MQ=255)

         ttCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTACCg                                                                                  >  2:2005235/1‑93 (MQ=255)

           cGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCggg                                                                                <  2:4127510/93‑1 (MQ=255)

            gTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGc                                                                               <  2:5156043/93‑1 (MQ=255)

              gATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCaa                                                                             >  1:1910093/1‑93 (MQ=255)

               aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCaaa                                                                            >  1:2556362/1‑93 (MQ=255)

               aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCaaa                                                                            <  1:1022771/93‑1 (MQ=255)

                tCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAt                                                                           >  2:3126990/1‑93 (MQ=255)

                 cTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAtt                                                                          >  1:2834013/1‑93 (MQ=255)

                 cTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAtt                                                                          <  1:2482066/93‑1 (MQ=255)

                 cTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAtt                                                                          >  1:5642651/1‑93 (MQ=255)

                 cTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAtt                                                                          >  1:4362471/1‑93 (MQ=255)

                   tGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCg                                                                        >  1:2427323/1‑93 (MQ=255)

                      gTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTaa                                                                     <  1:3019653/93‑1 (MQ=255)

                      gTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTaa                                                                     <  1:1666842/93‑1 (MQ=255)

                      gTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTaa                                                                     <  1:3269731/93‑1 (MQ=255)

                      gTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTaa                                                                     >  1:5978030/1‑93 (MQ=255)

                        gccTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGc                                                                   <  2:6017201/92‑1 (MQ=255)

                        aCCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGc                                                                   >  2:3619195/1‑93 (MQ=255)

                        aCCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGc                                                                   >  1:2036526/1‑93 (MQ=255)

                         ccTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCt                                                                  >  2:1125197/1‑93 (MQ=255)

                         ccTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCt                                                                  >  2:4140640/1‑93 (MQ=255)

                          cTGGTGGCATTGGCTGCACACCGCCGTTTGCGGCGGGCGGCACATTCCGGCCACGTGAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTg                                                                 <  2:362966/93‑1 (MQ=255)

                          cTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTg                                                                 <  2:1849444/93‑1 (MQ=255)

                           tggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTgg                                                                >  1:576941/1‑93 (MQ=255)

                           tggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTgg                                                                <  1:5394111/93‑1 (MQ=255)

                            ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGa                                                               >  2:4480446/1‑93 (MQ=255)

                             gtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGaa                                                              <  1:1742396/93‑1 (MQ=255)

                              tggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAg                                                             <  2:4712694/93‑1 (MQ=255)

                                 cATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATg                                                          <  2:5875681/93‑1 (MQ=255)

                                 cATTGGCTGAACACCGCCATTTTCGGCCTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAGTCGTGATCTGGAAGATg                                                          >  1:2599048/1‑93 (MQ=255)

                                  aTTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGa                                                         <  2:1288666/93‑1 (MQ=255)

                                  aTTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGa                                                         <  1:3202978/93‑1 (MQ=255)

                                  aTTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGa                                                         >  2:2006388/1‑93 (MQ=255)

                                    tGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGc                                                       <  2:133253/93‑1 (MQ=255)

                                    tGGCGGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGc                                                       <  2:4555894/93‑1 (MQ=255)

                                      gCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTg                                                     <  2:738399/93‑1 (MQ=255)

                                       cTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTgg                                                    <  2:1466399/93‑1 (MQ=255)

                                         gAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGc                                                  >  2:5947265/1‑93 (MQ=255)

                                            cacCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTg                                               <  2:5578826/93‑1 (MQ=255)

                                            cacCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTg                                               <  2:2664885/93‑1 (MQ=255)

                                             acCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGa                                              >  1:1092372/1‑93 (MQ=255)

                                             acCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGa                                              >  1:1776434/1‑93 (MQ=255)

                                               cGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATg                                            >  1:745276/1‑93 (MQ=255)

                                               cGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATg                                            >  1:5204489/1‑93 (MQ=255)

                                                 ccATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGtt                                          >  1:4924676/1‑93 (MQ=255)

                                                   aTTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGc                                        >  1:920668/1‑93 (MQ=255)

                                                     tttCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTg                                      <  2:8372/93‑1 (MQ=255)

                                                      ttCGGCGTGCGGCAGATTCCTGCCACGTTATCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTgg                                     <  1:943384/93‑1 (MQ=255)

                                                      ttCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTgg                                     <  2:1386925/93‑1 (MQ=255)

                                                      ttCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTgg                                     <  2:3710156/93‑1 (MQ=255)

                                                       tCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGa                                    <  1:3787409/93‑1 (MQ=255)

                                                       tCGGCGGCCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGa                                    <  1:1485130/93‑1 (MQ=255)

                                                        cGGCGTGCGCCAGTTTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAg                                   <  1:5861481/93‑1 (MQ=255)

                                                           cGTGCGGCAGATTCCTGCCACGTTAGCCCGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGCGCTGGGCGTGATGTTGCTGGAGCgg                                >  2:2370233/1‑93 (MQ=255)

                                                           cGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCgg                                <  2:638615/93‑1 (MQ=255)

                                                            gTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGa                               <  1:1587460/93‑1 (MQ=255)

                                                            gTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGa                               >  1:4227079/1‑93 (MQ=255)

                                                                ggCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAg                           >  1:3483163/1‑93 (MQ=255)

                                                                ggCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAg                           >  1:2347548/1‑93 (MQ=255)

                                                                 gCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGc                          >  1:111073/1‑93 (MQ=255)

                                                                  cAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGcc                         <  1:3227444/93‑1 (MQ=255)

                                                                  cAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGcc                         <  2:3294789/93‑1 (MQ=255)

                                                                   aGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCg                        >  1:447214/1‑93 (MQ=255)

                                                                   aGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCg                        >  1:5236256/1‑93 (MQ=255)

                                                                     aTTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTa                      >  1:1476921/1‑93 (MQ=255)

                                                                         cTGCCACGTTGGCCAGCCGGCGCTTAGCGGGCAAGTTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgt                  <  2:2500622/93‑1 (MQ=255)

                                                                          tGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAGATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg                 <  1:4698361/93‑1 (MQ=255)

                                                                            ccgcGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgtt               <  2:2174228/90‑1 (MQ=255)

                                                                            ccACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgtt               <  1:3700053/93‑1 (MQ=255)

                                                                            ccACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgtt               <  2:4617711/93‑1 (MQ=255)

                                                                             cACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttg              <  2:376794/93‑1 (MQ=255)

                                                                              aCGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttgt             >  1:2940528/1‑93 (MQ=255)

                                                                              aCGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttgt             >  1:840744/1‑93 (MQ=255)

                                                                               cGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTgttgtt            <  1:11593/93‑1 (MQ=255)

                                                                                gTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTc           >  2:5334010/1‑93 (MQ=255)

                                                                                gTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTc           <  2:891507/93‑1 (MQ=255)

                                                                                gTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTc           >  1:5521093/1‑93 (MQ=255)

                                                                                gTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTc           <  1:389986/93‑1 (MQ=255)

                                                                                 gtAGCCCGCTGACGCTTAGAGGGCAAATTCGTAAGGTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCa          <  1:2768042/92‑1 (MQ=255)

                                                                                    gccagccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAccc       >  1:658466/1‑93 (MQ=255)

                                                                                    gccagccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAccc       >  2:4782115/1‑93 (MQ=255)

                                                                                     ccagccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCa      <  2:4218290/93‑1 (MQ=255)

                                                                                      cagccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAg     <  2:5195119/93‑1 (MQ=255)

                                                                                      cagccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAg     <  1:5137039/93‑1 (MQ=255)

                                                                                       agccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAgg    <  2:4600409/93‑1 (MQ=255)

                                                                                       agccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAgg    >  1:3384990/1‑93 (MQ=255)

                                                                                        gccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGc   <  2:5291760/93‑1 (MQ=255)

                                                                                        gccGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGc   >  2:5058974/1‑93 (MQ=255)

TAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCG  >  NC_000913/4156067‑4156248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAA  >  NC_000913/4156067‑4156252

TAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGC                                                                                              <  SRR4302532.3343457/94‑1 (MQ=60)

TAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGC                                                                                              <  SRR4302532.4514903/94‑1 (MQ=60)

TAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGC                                                                                              <  SRR4302532.5263807/94‑1 (MQ=60)

 AATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCG                                                                                             >  SRR4302532.2101108/1‑94 (MQ=60)

 AATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCG                                                                                             >  SRR4302532.6004267/1‑94 (MQ=60)

 AATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCG                                                                                             <  SRR4302532.6082550/94‑1 (MQ=60)

  ATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGC                                                                                            >  SRR4302532.575832/1‑94 (MQ=60)

  ATGAATATTCGTGATCTTGAGTACCTGGGGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGC                                                                                            >  SRR4302532.575831/1‑94 (MQ=60)

   TGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCT                                                                                           <  SRR4302532.877879/94‑1 (MQ=60)

   TGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACCTTAACCAGCCGGCGCT                                                                                           >  SRR4302532.1845606/1‑94 (MQ=60)

   AGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGTTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCT                                                                                           <  SRR4302532.5385879/94‑1 (MQ=60)

     AATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTA                                                                                         <  SRR4302532.5414905/94‑1 (MQ=60)

     AATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTA                                                                                         <  SRR4302532.6066729/94‑1 (MQ=60)

      ATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAG                                                                                        <  SRR4302532.5388157/94‑1 (MQ=60)

      ATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAG                                                                                        >  SRR4302532.1725168/1‑94 (MQ=60)

      ATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAG                                                                                        >  SRR4302532.3060921/1‑94 (MQ=60)

       TATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGC                                                                                       >  SRR4302532.4356440/1‑94 (MQ=60)

        ATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCG                                                                                      >  SRR4302532.4518199/1‑94 (MQ=60)

        ATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCG                                                                                      <  SRR4302532.5048808/94‑1 (MQ=60)

        ATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCG                                                                                      >  SRR4302532.6344662/1‑94 (MQ=60)

         TTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGG                                                                                     <  SRR4302532.4932490/94‑1 (MQ=60)

         TTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGG                                                                                     <  SRR4302532.6348900/94‑1 (MQ=60)

         TTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGG                                                                                     <  SRR4302532.766050/94‑1 (MQ=60)

          TCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGG                                                                                    >  SRR4302532.785907/1‑94 (MQ=60)

          TCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGG                                                                                    <  SRR4302532.3469406/94‑1 (MQ=60)

           CGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGTCCGCCGGCGCTTAGCGGGC                                                                                   >  SRR4302532.2477292/1‑94 (MQ=60)

             TGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAA                                                                                 >  SRR4302532.1973523/1‑94 (MQ=60)

             TGATCTGGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAA                                                                                 <  SRR4302532.2577755/94‑1 (MQ=60)

              GATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAA                                                                                <  SRR4302532.954856/94‑1 (MQ=60)

              GATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAA                                                                                >  SRR4302532.2641629/1‑94 (MQ=60)

               ATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAT                                                                               <  SRR4302532.1057413/94‑1 (MQ=60)

                TCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATT                                                                              >  SRR4302532.4510328/1‑94 (MQ=60)

                TCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATT                                                                              >  SRR4302532.5838810/1‑94 (MQ=60)

                TCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATT                                                                              >  SRR4302532.2928769/1‑94 (MQ=60)

                 CTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTC                                                                             >  SRR4302532.1252828/1‑94 (MQ=60)

                 CTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTC                                                                             <  SRR4302532.2564773/94‑1 (MQ=60)

                  TTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCANGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCG                                                                            >  SRR4302532.3311377/1‑94 (MQ=60)

                  TTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCG                                                                            >  SRR4302532.2508000/1‑94 (MQ=60)

                  TTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGACAGCCGGCGCTTAGCGGGCAAATTCG                                                                            >  SRR4302532.3970603/1‑94 (MQ=60)

                    GAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTA                                                                          <  SRR4302532.2674776/94‑1 (MQ=60)

                    GAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTA                                                                          <  SRR4302532.1195107/94‑1 (MQ=60)

                     AGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAA                                                                         >  SRR4302532.6184636/1‑94 (MQ=60)

                     AGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAA                                                                         <  SRR4302532.5820773/94‑1 (MQ=60)

                      GTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAG                                                                        >  SRR4302532.6258939/1‑94 (MQ=60)

                      GTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAG                                                                        <  SRR4302532.3378476/94‑1 (MQ=60)

                      GTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAG                                                                        <  SRR4302532.3119273/94‑1 (MQ=60)

                      GTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAG                                                                        <  SRR4302532.1723265/94‑1 (MQ=60)

                      GTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAG                                                                        >  SRR4302532.467076/1‑94 (MQ=60)

                      GTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAG                                                                        <  SRR4302532.5140361/94‑1 (MQ=60)

                       TACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGC                                                                       >  SRR4302532.6032110/1‑94 (MQ=60)

                       TACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGC                                                                       >  SRR4302532.2104363/1‑94 (MQ=60)

                       TACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGC                                                                       <  SRR4302532.2550319/94‑1 (MQ=60)

                        ACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCT                                                                      >  SRR4302532.1015540/1‑94 (MQ=60)

                        ACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCT                                                                      >  SRR4302532.1143500/1‑94 (MQ=60)

                         CCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTG                                                                     >  SRR4302532.980829/1‑94 (MQ=60)

                          CTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGG                                                                    >  SRR4302532.597053/1‑94 (MQ=60)

                          CTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGG                                                                    >  SRR4302532.597052/1‑94 (MQ=60)

                          CTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGG                                                                    >  SRR4302532.4770464/1‑94 (MQ=60)

                          CTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGG                                                                    <  SRR4302532.3837950/94‑1 (MQ=60)

                           TGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGA                                                                   <  SRR4302532.5580998/94‑1 (MQ=60)

                            GGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAA                                                                  >  SRR4302532.3739469/1‑94 (MQ=60)

                             GTGGCATTGGCTGACCACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAG                                                                 <  SRR4302532.5982435/94‑1 (MQ=60)

                             GTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAG                                                                 <  SRR4302532.1801023/94‑1 (MQ=60)

                             GTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAG                                                                 <  SRR4302532.5618538/94‑1 (MQ=60)

                               GGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGAT                                                               <  SRR4302532.3334987/94‑1 (MQ=60)

                                GCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTTCCACGTTAGCCAACCGGCGCTTAGCAGGCAAATTCGTAAGCTGGAAGATG                                                              >  SRR4302532.111069/1‑94 (MQ=60)

                                GCATTGGCTGAACACCGCCATTTTCGGCCTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAAGTCGTGATCTGGAAGATG                                                              >  SRR4302532.2685939/1‑94 (MQ=60)

                                 CATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGA                                                             <  SRR4302532.3046430/94‑1 (MQ=60)

                                  ATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAG                                                            <  SRR4302532.2831753/94‑1 (MQ=60)

                                  ATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAG                                                            <  SRR4302532.1784971/94‑1 (MQ=60)

                                  ATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAG                                                            <  SRR4302532.3309327/94‑1 (MQ=60)

                                       CTGAACACCGCAATTTTCGGCGTGCGGGAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGACGACGAGCTGGG                                                       >  SRR4302532.2736303/1‑94 (MQ=60)

                                           ACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTG                                                   <  SRR4302532.2078267/94‑1 (MQ=60)

                                            CAGCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGA                                                  >  SRR4302532.4503596/1‑94 (MQ=60)

                                            CACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGA                                                  >  SRR4302532.1128911/1‑94 (MQ=60)

                                            CACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGA                                                  >  SRR4302532.1835909/1‑94 (MQ=60)

                                              CCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATG                                                >  SRR4302532.5383944/1‑94 (MQ=60)

                                              CCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATG                                                >  SRR4302532.770776/1‑94 (MQ=60)

                                                GCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTT                                              >  SRR4302532.5093822/1‑94 (MQ=60)

                                                GCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTT                                              >  SRR4302532.3437974/1‑94 (MQ=60)

                                                  CATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGC                                            >  SRR4302532.290948/1‑94 (MQ=60)

                                                  CATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGC                                            >  SRR4302532.952189/1‑94 (MQ=60)

                                                   ATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCT                                           >  SRR4302532.5084237/1‑94 (MQ=60)

                                                   ATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGGGATGTTGCG                                           >  SRR4302532.1657193/1‑94 (MQ=60)

                                                      TTCGGCGTGCGGCAGATTCCTGCCACGTTATCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGA                                        <  SRR4302532.975691/94‑1 (MQ=60)

                                                       TCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAG                                       <  SRR4302532.3915176/94‑1 (MQ=60)

                                                       TCGGCGTGAGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAG                                       <  SRR4302532.3234198/94‑1 (MQ=60)

                                                       TCGGCGGCCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAG                                       <  SRR4302532.1535221/94‑1 (MQ=60)

                                                        CGGCGTGCGCCAGTTTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGC                                      <  SRR4302532.6064706/94‑1 (MQ=60)

                                                         GGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCG                                     >  SRR4302532.3512524/1‑94 (MQ=60)

                                                         GGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCG                                     <  SRR4302532.183504/94‑1 (MQ=60)

                                                         GGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCG                                     >  SRR4302532.2870729/1‑94 (MQ=60)

                                                           CGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGA                                   >  SRR4302532.4368970/1‑94 (MQ=60)

                                                            GTGCGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAC                                  <  SRR4302532.1641185/94‑1 (MQ=60)

                                                               CGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAG                               >  SRR4302532.3599829/1‑94 (MQ=60)

                                                               CGGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAG                               >  SRR4302532.2425842/1‑94 (MQ=60)

                                                                GGCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGC                              >  SRR4302532.114908/1‑94 (MQ=60)

                                                                 GCAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATCAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCC                             <  SRR4302532.5335298/94‑1 (MQ=60)

                                                                  CAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCG                            >  SRR4302532.462727/1‑94 (MQ=60)

                                                                  CAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCG                            <  SRR4302532.3334567/94‑1 (MQ=60)

                                                                  CAGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCG                            >  SRR4302532.5416822/1‑94 (MQ=60)

                                                                   AGATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGT                           >  SRR4302532.6171581/1‑94 (MQ=60)

                                                                    GATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTA                          >  SRR4302532.1526698/1‑94 (MQ=60)

                                                                    GATTCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTA                          >  SRR4302532.1526697/1‑94 (MQ=60)

                                                                     ATCCCTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAA                         <  SRR4302532.3999952/94‑1 (MQ=60)

                                                                         CTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTG                     >  SRR4302532.550929/1‑94 (MQ=60)

                                                                         CTGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTG                     >  SRR4302532.550928/1‑94 (MQ=60)

                                                                          TGCCACGTTAGCCAGCCGGCGCTTAGCGGGCAGATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGT                    <  SRR4302532.4858623/94‑1 (MQ=60)

                                                                           GCCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTT                   >  SRR4302532.3229280/1‑94 (MQ=60)

                                                                            CCACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTG                  <  SRR4302532.3824279/94‑1 (MQ=60)

                                                                             CACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGT                 >  SRR4302532.869592/1‑94 (MQ=60)

                                                                             CACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGT                 >  SRR4302532.2151355/1‑94 (MQ=60)

                                                                             CACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGT                 >  SRR4302532.3038180/1‑94 (MQ=60)

                                                                             CACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGT                 >  SRR4302532.5717839/1‑94 (MQ=60)

                                                                             CACGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGT                 >  SRR4302532.1591755/1‑94 (MQ=60)

                                                                               gtTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTC               <  SRR4302532.2937624/92‑1 (MQ=60)

                                                                               CGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTC               <  SRR4302532.12080/94‑1 (MQ=60)

                                                                               CGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTC               >  SRR4302532.5712681/1‑94 (MQ=60)

                                                                               CGTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTC               >  SRR4302532.5136908/1‑94 (MQ=60)

                                                                                GTTAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCA              <  SRR4302532.403623/94‑1 (MQ=60)

                                                                                 gtagcccgctGACGCTTAGAGGGCAAATTCGTAAGGTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAC             <  SRR4302532.2860981/84‑1 (MQ=60)

                                                                                 TTAGCCAGCGGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAC             <  SRR4302532.2606358/94‑1 (MQ=60)

                                                                                  TAGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACC            <  SRR4302532.3077463/94‑1 (MQ=60)

                                                                                   AGCCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCC           >  SRR4302532.681260/1‑94 (MQ=60)

                                                                                     CCAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAG         <  SRR4302532.699262/94‑1 (MQ=60)

                                                                                      CAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGG        >  SRR4302532.3498212/1‑94 (MQ=60)

                                                                                      CAGCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGG        <  SRR4302532.5313753/94‑1 (MQ=60)

                                                                                        GCCGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCG      <  SRR4302532.1250177/94‑1 (MQ=60)

                                                                                          CGGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGG    >  SRR4302532.5102139/1‑94 (MQ=60)

                                                                                           GGCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTTAAGTGTTGTTCACCCAGGCGGGG   >  SRR4302532.3902605/1‑94 (MQ=60)

                                                                                            GCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAA  <  SRR4302532.3418340/94‑1 (MQ=60)

TAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAA  >  NC_000913/4156067‑4156252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`