Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,678,790 T→C S404P (TCT→CCT)  b1605 → putative arginine/ornithine antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,678,7900TC100.0% 842.5 / NA 230S404P (TCT→CCT) b1605putative arginine/ornithine antiporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (119/111);  total (119/111)

Only 100 of 234 total aligned reads displayed.

GGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCTCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGAT  >  NC_000913/1678700‑1678879
                                                                                          |                                                                                         
ggCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCccct                                                                                         <  1:4181730/93‑1 (MQ=255)
 gcgcGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTg                                                                                        >  1:6417513/1‑93 (MQ=255)
   gcgTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGt                                                                                      >  1:1161367/1‑93 (MQ=255)
     gTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTcc                                                                                    >  1:1608500/1‑93 (MQ=255)
      ttCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCa                                                                                   >  1:2655238/1‑93 (MQ=255)
      ttCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCa                                                                                   >  1:5676639/1‑93 (MQ=255)
       tCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCaa                                                                                  >  2:1975593/1‑93 (MQ=255)
        cTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAAt                                                                                 >  1:2329218/1‑93 (MQ=255)
        cTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAAt                                                                                 >  2:5006105/1‑93 (MQ=255)
             tGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACt                                                                            <  2:1764045/93‑1 (MQ=255)
              gAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACtt                                                                           <  2:295836/93‑1 (MQ=255)
                aaaTCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGc                                                                         <  1:507052/93‑1 (MQ=255)
                aaaTCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGc                                                                         <  1:5659424/93‑1 (MQ=255)
                 aaTCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCt                                                                        >  1:4554764/1‑93 (MQ=255)
                   tCGCAACCCGTCAACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGt                                                                      <  1:4673053/93‑1 (MQ=255)
                     gCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTa                                                                    <  1:1116997/93‑1 (MQ=255)
                     gCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTa                                                                    <  2:3930691/93‑1 (MQ=255)
                       aaCCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATc                                                                  <  1:2229646/93‑1 (MQ=255)
                       aaCCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATc                                                                  <  1:6605943/93‑1 (MQ=255)
                       aaCCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATc                                                                  >  2:44478/1‑93 (MQ=255)
                       aaCCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATc                                                                  <  2:3200063/93‑1 (MQ=255)
                         cccGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCg                                                                >  1:938751/1‑93 (MQ=255)
                         cccGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCg                                                                >  1:3404629/1‑93 (MQ=255)
                          ccGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgt                                                               >  1:4917506/1‑93 (MQ=255)
                           cGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgtt                                                              >  2:3457725/1‑93 (MQ=255)
                           cGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgtt                                                              <  1:2550320/93‑1 (MQ=255)
                            gTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgttg                                                             >  2:3613638/1‑93 (MQ=255)
                             tCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgttgt                                                            <  1:6164864/93‑1 (MQ=255)
                              ccACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgttgtt                                                           <  1:714535/93‑1 (MQ=255)
                              ccACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgttgtt                                                           >  1:1995525/1‑93 (MQ=255)
                              ccACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCgttgtt                                                           >  1:5874434/1‑93 (MQ=255)
                               cACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTc                                                          <  2:5602417/93‑1 (MQ=255)
                               cACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTc                                                          <  2:1000193/93‑1 (MQ=255)
                               cACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTc                                                          <  1:6356641/93‑1 (MQ=255)
                                 cTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTg                                                        <  1:1543072/93‑1 (MQ=255)
                                 cTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTg                                                        <  1:231456/93‑1 (MQ=255)
                                  tGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGt                                                       <  2:347373/93‑1 (MQ=255)
                                     aTAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATg                                                    >  2:5385065/1‑93 (MQ=255)
                                      tAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGc                                                   >  2:5747074/1‑93 (MQ=255)
                                      tAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGc                                                   <  1:2045028/93‑1 (MQ=255)
                                      tAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGc                                                   <  2:2646650/93‑1 (MQ=255)
                                      tAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGc                                                   <  2:4814907/93‑1 (MQ=255)
                                      tAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGc                                                   >  1:3957039/1‑93 (MQ=255)
                                        aaGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAc                                                 >  1:6098900/1‑93 (MQ=255)
                                        aaGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAc                                                 >  2:1606879/1‑93 (MQ=255)
                                         aGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAcc                                                <  2:3865612/93‑1 (MQ=255)
                                         aGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAcc                                                <  1:1276730/93‑1 (MQ=255)
                                          gCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCg                                               <  1:5461257/93‑1 (MQ=255)
                                          gCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCg                                               <  1:3681027/93‑1 (MQ=255)
                                              tAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGgc                                           <  2:5934081/93‑1 (MQ=255)
                                              gaGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGgc                                           <  2:2869160/92‑1 (MQ=255)
                                               aGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGgct                                          <  1:4016157/93‑1 (MQ=255)
                                                 gtgtCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGgctgc                                        >  1:2952919/1‑93 (MQ=255)
                                                   gtCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGctgctg                                      >  1:3983173/1‑93 (MQ=255)
                                                    tCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTgg                                     >  2:4088276/1‑93 (MQ=255)
                                                     cGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGt                                    <  2:3275423/93‑1 (MQ=255)
                                                      ggTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGtt                                   <  1:3067572/93‑1 (MQ=255)
                                                      ggTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGtt                                   >  1:2719950/1‑93 (MQ=255)
                                                      ggTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGtt                                   <  2:2636977/93‑1 (MQ=255)
                                                       gTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGttt                                  >  1:5731256/1‑93 (MQ=255)
                                                        tGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGtttt                                 >  2:1307084/1‑93 (MQ=255)
                                                        tGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGtttt                                 <  2:2404479/93‑1 (MQ=255)
                                                          ccTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTcc                               >  2:5259645/1‑93 (MQ=255)
                                                          ccTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTcc                               >  1:1896702/1‑93 (MQ=255)
                                                          ccTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTcc                               <  1:6304165/93‑1 (MQ=255)
                                                          ccTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTcc                               <  1:1362624/93‑1 (MQ=255)
                                                            tGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTg                             >  2:4622490/1‑93 (MQ=255)
                                                            tGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTg                             >  2:3041671/1‑93 (MQ=255)
                                                            tGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAAAGGGGCTGCTGGTTTTCCtt                             >  1:816145/1‑92 (MQ=255)
                                                             gCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGt                            >  2:6053742/1‑93 (MQ=255)
                                                              cATTTATTGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTTGTTTTCCTGTa                           <  1:4825650/93‑1 (MQ=255)
                                                              cATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTa                           >  1:5185664/1‑93 (MQ=255)
                                                               aTTTATGGCTTATGGTTATCGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTAc                          <  2:75024/93‑1 (MQ=255)
                                                                tttATGGCTTATGGTTATTGTACGCCCCTGGTCCAATTCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTAcg                         <  2:634842/93‑1 (MQ=255)
                                                                 ttATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTAcgc                        <  2:874873/93‑1 (MQ=255)
                                                                 ttATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTAcgc                        <  1:5819968/93‑1 (MQ=255)
                                                                    tGGCTTATGGTTATTGTACGCCCCTGGGCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTTCTGTAcgcgcg                     >  1:1758557/1‑93 (MQ=255)
                                                                        ttATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCaaa                 <  1:1444799/93‑1 (MQ=255)
                                                                         tATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCaaaa                >  1:141229/1‑93 (MQ=255)
                                                                         tATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCaaaa                >  1:4304802/1‑93 (MQ=255)
                                                                          aTGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAAc               <  2:235751/93‑1 (MQ=255)
                                                                          aTGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAAc               >  1:528804/1‑93 (MQ=255)
                                                                          aTGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAAc               <  2:6103529/93‑1 (MQ=255)
                                                                          aTGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGGTTTCCTGTACGCGCGCAAAAc               >  1:3777080/1‑93 (MQ=255)
                                                                             gTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCa            <  2:4604866/93‑1 (MQ=255)
                                                                             gTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCa            >  2:3035192/1‑93 (MQ=255)
                                                                              ttATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCAt           <  1:1201665/93‑1 (MQ=255)
                                                                              ttATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCAt           <  2:1299093/93‑1 (MQ=255)
                                                                              ttATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCAt           <  2:104576/93‑1 (MQ=255)
                                                                              ttATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCAt           >  2:6136834/1‑93 (MQ=255)
                                                                              ttATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCAt           <  2:5635780/93‑1 (MQ=255)
                                                                               tATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATa          <  2:2753045/93‑1 (MQ=255)
                                                                               tATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATa          >  1:3150465/1‑93 (MQ=255)
                                                                                 ttGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATAcc        <  1:6574699/93‑1 (MQ=255)
                                                                                    tACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCAt     >  2:4929405/1‑93 (MQ=255)
                                                                                    tACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCAt     >  2:794879/1‑93 (MQ=255)
                                                                                      cGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGa   >  2:1340102/1‑93 (MQ=255)
                                                                                      cGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGa   >  1:1051519/1‑93 (MQ=255)
                                                                                       gCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGAt  <  1:2149568/93‑1 (MQ=255)
                                                                                       gCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGAt  <  2:853087/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCTCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGAT  >  NC_000913/1678700‑1678879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTCGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCTCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATG  >  NC_000913/1678697‑1678883
                                                                                             |                                                                                             
GTCGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCC                                                                                               <  SRR4302547.476937/94‑1 (MQ=60)
GTCGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCC                                                                                               <  SRR4302547.480105/94‑1 (MQ=60)
 TCGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCC                                                                                              >  SRR4302547.2446377/1‑94 (MQ=60)
  CGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCT                                                                                             <  SRR4302547.3440436/94‑1 (MQ=60)
  CGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCT                                                                                             <  SRR4302547.382115/94‑1 (MQ=60)
  CGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCT                                                                                             <  SRR4302547.137953/94‑1 (MQ=60)
   GGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTG                                                                                            >  SRR4302547.2693222/1‑94 (MQ=60)
   GGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTG                                                                                            >  SRR4302547.3660151/1‑94 (MQ=60)
   GGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTG                                                                                            <  SRR4302547.4266948/94‑1 (MQ=60)
   AGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTG                                                                                            >  SRR4302547.6551318/1‑94 (MQ=60)
     CGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGT                                                                                          >  SRR4302547.1184860/1‑94 (MQ=60)
      GCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTC                                                                                         >  SRR4302547.3874027/1‑94 (MQ=60)
       CGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCC                                                                                        >  SRR4302547.6735438/1‑94 (MQ=60)
       CGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCC                                                                                        >  SRR4302547.1640379/1‑94 (MQ=60)
       CGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCC                                                                                        >  SRR4302547.5342226/1‑94 (MQ=60)
        GTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCA                                                                                       >  SRR4302547.2708607/1‑94 (MQ=60)
        GTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCA                                                                                       >  SRR4302547.4069762/1‑94 (MQ=60)
        GTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCA                                                                                       <  SRR4302547.5115188/94‑1 (MQ=60)
        GTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCA                                                                                       >  SRR4302547.5793852/1‑94 (MQ=60)
        GTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCA                                                                                       >  SRR4302547.5840615/1‑94 (MQ=60)
        GTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCA                                                                                       >  SRR4302547.2796161/1‑94 (MQ=60)
         TTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAA                                                                                      >  SRR4302547.4893013/1‑94 (MQ=60)
          TCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAAT                                                                                     >  SRR4302547.2376432/1‑94 (MQ=60)
          TCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAAT                                                                                     <  SRR4302547.3415928/94‑1 (MQ=60)
           CTTGCTGAAAATCGCACCCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATG                                                                                    <  SRR4302547.3431116/94‑1 (MQ=60)
           CTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATG                                                                                    <  SRR4302547.589340/94‑1 (MQ=60)
            TTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGCGTCGGTGCCTGCATTTATGGCTTATGGGTATTGTACGCCCCTGGTCCAATGC                                                                                   >  SRR4302547.6635573/1‑94 (MQ=60)
               CTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACT                                                                                >  SRR4302547.826913/1‑94 (MQ=60)
               CTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACT                                                                                >  SRR4302547.800839/1‑94 (MQ=60)
                   AAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCT                                                                            <  SRR4302547.5776251/94‑1 (MQ=60)
                   AAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCT                                                                            <  SRR4302547.516257/94‑1 (MQ=60)
                   AAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCT                                                                            >  SRR4302547.4648988/1‑94 (MQ=60)
                      TCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTT                                                                         <  SRR4302547.1280740/94‑1 (MQ=60)
                      TCGCAACCCGTCAACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTT                                                                         <  SRR4302547.4769829/94‑1 (MQ=60)
                       CGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGAGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTA                                                                        <  SRR4302547.6275814/94‑1 (MQ=60)
                       CACAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTA                                                                        <  SRR4302547.403371/94‑1 (MQ=60)
                        GCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTAT                                                                       <  SRR4302547.1139492/94‑1 (MQ=60)
                         CAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATC                                                                      >  SRR4302547.1194888/1‑94 (MQ=60)
                          AACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCC                                                                     <  SRR4302547.2046167/94‑1 (MQ=60)
                          AACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCC                                                                     <  SRR4302547.224567/94‑1 (MQ=60)
                          AACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCC                                                                     <  SRR4302547.2274585/94‑1 (MQ=60)
                          AACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCC                                                                     <  SRR4302547.6743460/94‑1 (MQ=60)
                          AACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCC                                                                     >  SRR4302547.100286/1‑94 (MQ=60)
                          AACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCC                                                                     <  SRR4302547.2742867/94‑1 (MQ=60)
                           ACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCG                                                                    >  SRR4302547.3473906/1‑94 (MQ=60)
                           ACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCG                                                                    >  SRR4302547.6693381/1‑94 (MQ=60)
                           ACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCG                                                                    >  SRR4302547.956930/1‑94 (MQ=60)
                           ACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCG                                                                    >  SRR4302547.2163049/1‑94 (MQ=60)
                            CCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGT                                                                   >  SRR4302547.5019350/1‑94 (MQ=60)
                             CCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTT                                                                  <  SRR4302547.3093519/94‑1 (MQ=60)
                             CCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTCATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTT                                                                  >  SRR4302547.3874433/1‑94 (MQ=60)
                              CGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTG                                                                 <  SRR4302547.2601820/94‑1 (MQ=60)
                               GTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGT                                                                <  SRR4302547.4375260/94‑1 (MQ=60)
                               GTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGT                                                                >  SRR4302547.5789236/1‑94 (MQ=60)
                                TCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTT                                                               <  SRR4302547.6292818/94‑1 (MQ=60)
                                TCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTT                                                               >  SRR4302547.2035216/1‑94 (MQ=60)
                                TCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTT                                                               >  SRR4302547.5996041/1‑94 (MQ=60)
                                TCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTT                                                               >  SRR4302547.6067804/1‑94 (MQ=60)
                                 CCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTC                                                              <  SRR4302547.727763/94‑1 (MQ=60)
                                  CACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCT                                                             <  SRR4302547.6489179/94‑1 (MQ=60)
                                  CACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCT                                                             >  SRR4302547.120079/1‑94 (MQ=60)
                                   ACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTG                                                            >  SRR4302547.5446359/1‑94 (MQ=60)
                                    CTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGT                                                           <  SRR4302547.1573785/94‑1 (MQ=60)
                                    CTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGT                                                           <  SRR4302547.235811/94‑1 (MQ=60)
                                       CATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATG                                                        >  SRR4302547.142764/1‑94 (MQ=60)
                                        ATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGC                                                       >  SRR4302547.3176156/1‑94 (MQ=60)
                                        ATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGC                                                       >  SRR4302547.4037534/1‑94 (MQ=60)
                                         TAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCA                                                      <  SRR4302547.2085820/94‑1 (MQ=60)
                                          AAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAC                                                     <  SRR4302547.6453780/94‑1 (MQ=60)
                                          AAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAC                                                     >  SRR4302547.6225414/1‑94 (MQ=60)
                                            AGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCG                                                   <  SRR4302547.3789666/94‑1 (MQ=60)
                                            AGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCG                                                   <  SRR4302547.1302443/94‑1 (MQ=60)
                                             GCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGG                                                  <  SRR4302547.6413560/94‑1 (MQ=60)
                                             GCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGG                                                  <  SRR4302547.5574077/94‑1 (MQ=60)
                                             GCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGG                                                  <  SRR4302547.3756176/94‑1 (MQ=60)
                                               GGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGG                                                >  SRR4302547.412485/1‑94 (MQ=60)
                                                 TAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCT                                              <  SRR4302547.5942546/94‑1 (MQ=60)
                                                 TAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCT                                              <  SRR4302547.893210/94‑1 (MQ=60)
                                                 TAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCT                                              <  SRR4302547.1627855/94‑1 (MQ=60)
                                                  AGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTG                                             <  SRR4302547.2362762/94‑1 (MQ=60)
                                                  AGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTG                                             <  SRR4302547.4097772/94‑1 (MQ=60)
                                                   GGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGC                                            >  SRR4302547.3011706/1‑94 (MQ=60)
                                                     TGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTG                                          >  SRR4302547.4064167/1‑94 (MQ=60)
                                                     TGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTG                                          <  SRR4302547.1520050/94‑1 (MQ=60)
                                                     TGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTG                                          <  SRR4302547.1636726/94‑1 (MQ=60)
                                                       TCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGT                                        >  SRR4302547.2544936/1‑94 (MQ=60)
                                                        CGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTT                                       >  SRR4302547.2774561/1‑94 (MQ=60)
                                                        CGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTT                                       >  SRR4302547.4230527/1‑94 (MQ=60)
                                                        CGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTT                                       >  SRR4302547.5270690/1‑94 (MQ=60)
                                                        CGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTT                                       <  SRR4302547.5077323/94‑1 (MQ=60)
                                                         GGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTT                                      <  SRR4302547.3128547/94‑1 (MQ=60)
                                                         GGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTT                                      >  SRR4302547.5849661/1‑94 (MQ=60)
                                                          GTGCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTT                                     >  SRR4302547.2881811/1‑94 (MQ=60)
                                                            GCCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCC                                   >  SRR4302547.1934211/1‑94 (MQ=60)
                                                             CCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCT                                  >  SRR4302547.5012482/1‑94 (MQ=60)
                                                             CCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCT                                  <  SRR4302547.1142783/94‑1 (MQ=60)
                                                             CCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCT                                  <  SRR4302547.1389965/94‑1 (MQ=60)
                                                             CCTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCT                                  <  SRR4302547.6435236/94‑1 (MQ=60)
                                                              CTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTG                                 <  SRR4302547.6068450/94‑1 (MQ=60)
                                                              CTGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCAAAGGGGCTGCTGGTTTTCCTT                                 >  SRR4302547.831644/1‑94 (MQ=60)
                                                               TGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGT                                >  SRR4302547.1113634/1‑94 (MQ=60)
                                                               TGCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGT                                >  SRR4302547.4742355/1‑94 (MQ=60)
                                                                GCATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTA                               >  SRR4302547.5292389/1‑94 (MQ=60)
                                                                 CATTTATTGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTTGTTTTCCTGTAC                              <  SRR4302547.4925696/94‑1 (MQ=60)
                                                                 CATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTAC                              >  SRR4302547.4539948/1‑94 (MQ=60)
                                                                 CATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTAC                              <  SRR4302547.1446363/94‑1 (MQ=60)
                                                                  ATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACG                             <  SRR4302547.2206658/94‑1 (MQ=60)
                                                                  ATTTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACG                             >  SRR4302547.4686149/1‑94 (MQ=60)
                                                                    TTATGGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCG                           <  SRR4302547.5940376/94‑1 (MQ=60)
                                                                      ATGGCTTATGGTTATTGTACGCCCCTGGGCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTTCTGTACGCGCG                         >  SRR4302547.1793392/1‑94 (MQ=60)
                                                                        GGCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCA                       >  SRR4302547.1920572/1‑94 (MQ=60)
                                                                         GCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAA                      <  SRR4302547.1427379/94‑1 (MQ=60)
                                                                         GCTTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAA                      >  SRR4302547.1676777/1‑94 (MQ=60)
                                                                           TTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAA                    >  SRR4302547.143786/1‑94 (MQ=60)
                                                                           TTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAA                    >  SRR4302547.4393348/1‑94 (MQ=60)
                                                                           TTATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAA                    <  SRR4302547.1473695/94‑1 (MQ=60)
                                                                            TATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAAC                   <  SRR4302547.1324128/94‑1 (MQ=60)
                                                                            TATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAAC                   >  SRR4302547.538356/1‑94 (MQ=60)
                                                                            TATGGTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGGTTTCCTGTACGCGCGCAAAAC                   >  SRR4302547.3854109/1‑94 (MQ=60)
                                                                                GTTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCAT               <  SRR4302547.1945756/94‑1 (MQ=60)
                                                                                 TTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATA              >  SRR4302547.3213075/1‑94 (MQ=60)
                                                                                 TTATTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATA              <  SRR4302547.1225920/94‑1 (MQ=60)
                                                                                  TATTGTACGCCCCTGGTCCAATGCACTTGCTTTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATAC             >  SRR4302547.575179/1‑94 (MQ=60)
                                                                                    TTGTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCC           <  SRR4302547.6711581/94‑1 (MQ=60)
                                                                                      TTACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGTATACCCAT         <  SRR4302547.6445850/94‑1 (MQ=60)
                                                                                       TACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCCTG        <  SRR4302547.6491662/94‑1 (MQ=60)
                                                                                       TACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATG        <  SRR4302547.6779851/94‑1 (MQ=60)
                                                                                       TACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATG        >  SRR4302547.5844534/1‑94 (MQ=60)
                                                                                       TACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATG        <  SRR4302547.5501778/94‑1 (MQ=60)
                                                                                        ACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGA       >  SRR4302547.1072386/1‑94 (MQ=60)
                                                                                        ACGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGA       >  SRR4302547.2013804/1‑94 (MQ=60)
                                                                                         CGCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGAT      <  SRR4302547.2449100/94‑1 (MQ=60)
                                                                                          GCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATA     >  SRR4302547.2859518/1‑94 (MQ=60)
                                                                                          GCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATA     >  SRR4302547.3182778/1‑94 (MQ=60)
                                                                                          GCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATA     <  SRR4302547.2192468/94‑1 (MQ=60)
                                                                                          GCCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATA     >  SRR4302547.3823409/1‑94 (MQ=60)
                                                                                           CCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAA    <  SRR4302547.6471501/94‑1 (MQ=60)
                                                                                           CCCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAA    >  SRR4302547.4817418/1‑94 (MQ=60)
                                                                                            CCCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAAT   >  SRR4302547.1277052/1‑94 (MQ=60)
                                                                                             CCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATG  <  SRR4302547.691622/94‑1 (MQ=60)
                                                                                             CCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATG  >  SRR4302547.771024/1‑94 (MQ=60)
                                                                                             CCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATG  >  SRR4302547.6436545/1‑94 (MQ=60)
                                                                                             |                                                                                             
GTCGGCGCGTTCTTGCTGAAAATCGCAACCCGTCCACTGCATAAAGCGGTAGGTGTCGGTGCCTGCATTTATGGCTTATGGTTATTGTACGCCTCTGGTCCAATGCACTTGCTGTTATCCGTTGTTCTGTATGCACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATG  >  NC_000913/1678697‑1678883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑