Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,118,886 |
T→C |
T231A (ACC→GCC) |
wcaJ ← |
putative colanic acid biosynthsis UDP‑glucose lipid carrier transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,118,886 | 0 | T | C | 100.0%
| 848.8
/ NA
| 233 | T231A (ACC→GCC) | wcaJ | putative colanic acid biosynthsis UDP‑glucose lipid carrier transferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (109/124); total (109/124) |
Only 100 of 241 total aligned reads displayed.
GCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTT > NC_000913/2118796‑2118975
|
cGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAggcggt > 2:2572015/1‑93 (MQ=255)
ggCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGgcggtg > 1:5785746/1‑93 (MQ=255)
gCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGgtgt > 2:1987292/1‑93 (MQ=255)
caccacCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTc < 1:1660879/93‑1 (MQ=255)
caccacCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTc < 2:4359127/93‑1 (MQ=255)
accaccGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTcc > 2:2655623/1‑93 (MQ=255)
ccaccGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCg > 1:910323/1‑93 (MQ=255)
accGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGcc > 1:6119563/1‑93 (MQ=255)
accGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGcc < 1:2643957/93‑1 (MQ=255)
cGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAg > 2:6456723/1‑93 (MQ=255)
gTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGtt < 2:6256194/93‑1 (MQ=255)
gTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGtt < 1:4203043/93‑1 (MQ=255)
aCGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGa > 2:6345946/1‑93 (MQ=255)
aCGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGa > 2:2388942/1‑93 (MQ=255)
gCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATg > 2:5491503/1‑93 (MQ=255)
gCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATg > 2:1469238/1‑93 (MQ=255)
ccGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATgg < 1:3813460/93‑1 (MQ=255)
gTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGTATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGAc > 2:345774/1‑93 (MQ=255)
ttCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGAcc > 1:790002/1‑93 (MQ=255)
ttCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGAcc > 2:1866173/1‑93 (MQ=255)
tCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCa > 2:4305861/1‑93 (MQ=255)
aTCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGt > 2:3916411/1‑93 (MQ=255)
ctctTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGttt < 2:1707494/93‑1 (MQ=255)
tctTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGtttt > 1:6376261/1‑93 (MQ=255)
tctTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGtttt < 1:4301776/93‑1 (MQ=255)
tctTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGtttt < 2:5343137/93‑1 (MQ=255)
ctTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGttttt < 2:5874348/93‑1 (MQ=255)
ctTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGttttt < 1:5058162/93‑1 (MQ=255)
ctTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGttttt < 2:1268177/93‑1 (MQ=255)
ttCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGtttttt < 2:1239329/93‑1 (MQ=255)
tCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTc > 2:2210494/1‑93 (MQ=255)
cGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCa > 1:714807/1‑93 (MQ=255)
gAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCAc > 1:5169015/1‑93 (MQ=255)
aGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACt > 1:1301484/1‑93 (MQ=255)
aGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACt < 2:2762502/93‑1 (MQ=255)
aGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACt > 1:2180214/1‑93 (MQ=255)
ggCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTc < 1:5888261/93‑1 (MQ=255)
gCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcg < 1:2165704/93‑1 (MQ=255)
gTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcgcg < 2:6593355/93‑1 (MQ=255)
gTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcgcg > 1:1035717/1‑93 (MQ=255)
gTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcccg > 1:1159085/1‑93 (MQ=255)
gTGAATGGAGAATGTTGAAGGAAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcgcg < 1:36809/93‑1 (MQ=255)
tGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcgcgc < 1:5419039/93‑1 (MQ=255)
tGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcgcgc < 2:1031002/93‑1 (MQ=255)
tGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTcgcgc < 2:1189629/93‑1 (MQ=255)
aaTGGAGAATGTTGAAGGTCAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCgcgcgc > 1:6497597/1‑93 (MQ=255)
ggAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGt < 2:4440199/93‑1 (MQ=255)
ggAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGt < 1:4915641/93‑1 (MQ=255)
agaATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCg < 2:4600845/93‑1 (MQ=255)
agaATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCg > 2:2108725/1‑93 (MQ=255)
aaTGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGca > 2:1510551/1‑93 (MQ=255)
aTGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGcac < 1:4219691/93‑1 (MQ=255)
aggtGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGcaca < 1:3085478/90‑1 (MQ=255)
gTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACAt < 2:713341/93‑1 (MQ=255)
gTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACAt < 1:767109/93‑1 (MQ=255)
ttGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACAtt < 1:6257200/93‑1 (MQ=255)
ttGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACAtt > 2:2218248/1‑93 (MQ=255)
gAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTg > 1:2338943/1‑93 (MQ=255)
aGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCa > 1:4818568/1‑93 (MQ=255)
aGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCa < 2:1787588/93‑1 (MQ=255)
aaaGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATcgc < 2:4980114/93‑1 (MQ=255)
aaaGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATcgc > 2:378770/1‑93 (MQ=255)
aaGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATcgcg < 1:2800050/93‑1 (MQ=255)
gACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGat < 1:1813591/93‑1 (MQ=255)
gACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGat > 1:5340518/1‑93 (MQ=255)
gTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGAtata < 2:5642688/93‑1 (MQ=255)
gTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGAtata < 2:2320328/93‑1 (MQ=255)
gTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGAtata < 1:557354/93‑1 (MQ=255)
tCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAg < 2:6513138/93‑1 (MQ=255)
ggggATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGAc > 1:2588966/1‑93 (MQ=255)
ggggATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGAc > 2:3730003/1‑93 (MQ=255)
gggATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACg > 2:1612368/1‑93 (MQ=255)
ggATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGt > 2:6003820/1‑93 (MQ=255)
ggATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGt > 2:317601/1‑93 (MQ=255)
aTCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTa < 1:3309649/93‑1 (MQ=255)
aTCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTa > 2:6074011/1‑93 (MQ=255)
aTCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTa < 2:4728577/93‑1 (MQ=255)
cagcagCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATg > 2:2761648/1‑93 (MQ=255)
agcagcACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGa < 2:5663479/93‑1 (MQ=255)
agcagcACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGa > 1:2268579/1‑93 (MQ=255)
agcagcACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGa > 1:5266573/1‑93 (MQ=255)
gcagcaCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGaa < 2:4501098/93‑1 (MQ=255)
gcagcaCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGaa < 1:5278826/93‑1 (MQ=255)
agcaCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATc > 1:4074924/1‑93 (MQ=255)
agcaCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATc < 2:4854233/93‑1 (MQ=255)
gcaCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCt < 1:3117854/93‑1 (MQ=255)
gcaCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCt < 2:5666203/93‑1 (MQ=255)
caCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCtt < 2:3851615/93‑1 (MQ=255)
aCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTg > 1:3926494/1‑93 (MQ=255)
aCCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCACACATTTGCATCGCGATATAGACGTTATGAATCTTg > 1:255422/1‑93 (MQ=255)
ccGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGc < 2:4909259/93‑1 (MQ=255)
ccGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGc < 1:2881399/93‑1 (MQ=255)
cGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGcc < 1:200220/93‑1 (MQ=255)
cGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGcc < 2:3809237/93‑1 (MQ=255)
cGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGcc < 2:4961378/93‑1 (MQ=255)
gAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGccc < 2:4013733/93‑1 (MQ=255)
aaCAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCg < 1:4970280/93‑1 (MQ=255)
aaCAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCg < 1:470804/93‑1 (MQ=255)
aGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCtt > 1:4468909/1‑93 (MQ=255)
aGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCtt < 1:5756387/93‑1 (MQ=255)
|
GCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTT > NC_000913/2118796‑2118975
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTTCG > NC_000913/2118793‑2118978
|
AAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGC > SRR4302547.4601210/1‑94 (MQ=60)
AAGCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCG < SRR4302547.684290/94‑1 (MQ=60)
GCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGT < SRR4302547.2075724/94‑1 (MQ=60)
CGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTG > SRR4302547.5905424/1‑94 (MQ=60)
CGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTG < SRR4302547.4047754/94‑1 (MQ=60)
CACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCC < SRR4302547.1693627/94‑1 (MQ=60)
ACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCG > SRR4302547.3817340/1‑94 (MQ=60)
ACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCG > SRR4302547.927870/1‑94 (MQ=60)
CACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCC > SRR4302547.6246500/1‑94 (MQ=60)
ACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCA < SRR4302547.2697165/94‑1 (MQ=60)
CGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGT > SRR4302547.508357/1‑94 (MQ=60)
GTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTG < SRR4302547.3149750/94‑1 (MQ=60)
GTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTG < SRR4302547.5521572/94‑1 (MQ=60)
GTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTG < SRR4302547.4288784/94‑1 (MQ=60)
CGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATG < SRR4302547.2415794/94‑1 (MQ=60)
GCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGG > SRR4302547.1678388/1‑94 (MQ=60)
GCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGG > SRR4302547.2900681/1‑94 (MQ=60)
CCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGA < SRR4302547.3891173/94‑1 (MQ=60)
CCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGA < SRR4302547.5714320/94‑1 (MQ=60)
CCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGA < SRR4302547.2326814/94‑1 (MQ=60)
CGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGAC < SRR4302547.4321059/94‑1 (MQ=60)
CGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGAC > SRR4302547.680328/1‑94 (MQ=60)
CGTTCATCTCTTCGAGGCGTGAATGGAGAATGGTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGCCCGCCAGTTGGTGGAC > SRR4302547.468537/1‑94 (MQ=60)
GTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACC > SRR4302547.804957/1‑94 (MQ=60)
GTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACC > SRR4302547.6572929/1‑94 (MQ=60)
TCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAG > SRR4302547.743421/1‑94 (MQ=60)
CATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGT > SRR4302547.1463523/1‑94 (MQ=60)
ATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTT > SRR4302547.4834166/1‑94 (MQ=60)
TCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTT < SRR4302547.6394926/94‑1 (MQ=60)
TCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTT < SRR4302547.4390845/94‑1 (MQ=60)
CTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTT > SRR4302547.6509310/1‑94 (MQ=60)
TCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTT < SRR4302547.4390251/94‑1 (MQ=60)
CTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTT < SRR4302547.5162551/94‑1 (MQ=60)
CTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTT < SRR4302547.2791986/94‑1 (MQ=60)
TTCGAGGCGAGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTA > SRR4302547.6456837/1‑94 (MQ=60)
TCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCA > SRR4302547.728040/1‑94 (MQ=60)
CGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCAC > SRR4302547.5275448/1‑94 (MQ=60)
GAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACT < SRR4302547.2219582/94‑1 (MQ=60)
GAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACT > SRR4302547.2223880/1‑94 (MQ=60)
GAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACT > SRR4302547.1327671/1‑94 (MQ=60)
GAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACC > SRR4302547.4536239/1‑94 (MQ=60)
GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCG < SRR4302547.6010161/94‑1 (MQ=60)
GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCG > SRR4302547.2625854/1‑94 (MQ=60)
GCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGC < SRR4302547.2209016/94‑1 (MQ=60)
GCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGC > SRR4302547.489332/1‑94 (MQ=60)
CGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCG > SRR4302547.1056110/1‑94 (MQ=60)
CGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCCCG > SRR4302547.1182527/1‑94 (MQ=60)
GTGAATGGAGAATGTTGAAGGAAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGC < SRR4302547.37487/94‑1 (MQ=60)
TGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCG < SRR4302547.1245803/94‑1 (MQ=60)
TGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCG < SRR4302547.5531129/94‑1 (MQ=60)
GAATGGAGAATGTTGAAGGTCAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGC > SRR4302547.6632839/1‑94 (MQ=60)
GAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGGCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGC < SRR4302547.2604873/94‑1 (MQ=60)
ATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCG < SRR4302547.1165056/94‑1 (MQ=60)
GGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTC < SRR4302547.5017445/94‑1 (MQ=60)
GGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTC < SRR4302547.1991554/94‑1 (MQ=60)
AATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCAC < SRR4302547.4239843/94‑1 (MQ=60)
AATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCAC > SRR4302547.5703084/1‑94 (MQ=60)
ATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACA > SRR4302547.635883/1‑94 (MQ=60)
ATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACA < SRR4302547.2678112/94‑1 (MQ=60)
ATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACA < SRR4302547.4305870/94‑1 (MQ=60)
aggTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACAT < SRR4302547.3146711/91‑1 (MQ=60)
GTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATT < SRR4302547.781602/94‑1 (MQ=60)
GTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATT > SRR4302547.4301657/1‑94 (MQ=60)
TTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTT < SRR4302547.3338793/94‑1 (MQ=60)
TTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTT > SRR4302547.6151728/1‑94 (MQ=60)
TTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTT < SRR4302547.6387167/94‑1 (MQ=60)
TTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTT < SRR4302547.2697457/94‑1 (MQ=60)
TGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTG > SRR4302547.2386361/1‑94 (MQ=60)
AAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCA > SRR4302547.4918426/1‑94 (MQ=60)
GTAAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCG < SRR4302547.3551265/94‑1 (MQ=60)
AAAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCG > SRR4302547.789075/1‑94 (MQ=60)
AAGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGA < SRR4302547.2856119/94‑1 (MQ=60)
AGACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGAT > SRR4302547.5450603/1‑94 (MQ=60)
GACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATA > SRR4302547.3145536/1‑94 (MQ=60)
GACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATA < SRR4302547.1849420/94‑1 (MQ=60)
AACGTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGAACAGCTTTTTCACTCGCGCGCCGTCGCACACTTGCATCGCGATA > SRR4302547.3761054/1‑94 (MQ=60)
GTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAG < SRR4302547.567397/94‑1 (MQ=60)
GTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAG < SRR4302547.5014018/94‑1 (MQ=60)
GTCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAG < SRR4302547.1811019/94‑1 (MQ=60)
TCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGA > SRR4302547.5316342/1‑94 (MQ=60)
TCGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGA < SRR4302547.2237097/94‑1 (MQ=60)
CGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGAC > SRR4302547.2641195/1‑94 (MQ=60)
CGGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGAC > SRR4302547.3933710/1‑94 (MQ=60)
GGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGCCG < SRR4302547.5280644/94‑1 (MQ=60)
GGGGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG < SRR4302547.2997613/94‑1 (MQ=60)
GGATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTT > SRR4302547.5383439/1‑94 (MQ=60)
GATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTA < SRR4302547.828478/94‑1 (MQ=60)
GATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTA < SRR4302547.5023189/94‑1 (MQ=60)
ATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTAT < SRR4302547.5915176/94‑1 (MQ=60)
ATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTAT < SRR4302547.6027750/94‑1 (MQ=60)
ATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTAT < SRR4302547.4202732/94‑1 (MQ=60)
ATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTAT < SRR4302547.3376384/94‑1 (MQ=60)
ATCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTAT < SRR4302547.3609419/94‑1 (MQ=60)
TCAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATG < SRR4302547.5190120/94‑1 (MQ=60)
CAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGA > SRR4302547.2314457/1‑94 (MQ=60)
CAGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGA > SRR4302547.5375042/1‑94 (MQ=60)
AGCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAA > SRR4302547.6635418/1‑94 (MQ=60)
GCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAAT < SRR4302547.512668/94‑1 (MQ=60)
GCAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAAT < SRR4302547.5387711/94‑1 (MQ=60)
CAGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATC > SRR4302547.4157718/1‑94 (MQ=60)
AGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCT > SRR4302547.5886276/1‑94 (MQ=60)
AGCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCT > SRR4302547.5416523/1‑94 (MQ=60)
GCACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTT < SRR4302547.3179656/94‑1 (MQ=60)
CACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTG < SRR4302547.226859/94‑1 (MQ=60)
CACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTG > SRR4302547.4006344/1‑94 (MQ=60)
CACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTG < SRR4302547.3950037/94‑1 (MQ=60)
CACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTG < SRR4302547.922949/94‑1 (MQ=60)
CACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCACACATTTGCATCGCGATATAGACGTTATGAATCTTG > SRR4302547.260198/1‑94 (MQ=60)
ACCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCTCGATATAGACGTTATGAATCTTGC > SRR4302547.1943709/1‑94 (MQ=60)
CCGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCC < SRR4302547.2938912/94‑1 (MQ=60)
CGAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCC < SRR4302547.203952/94‑1 (MQ=60)
GAACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCG < SRR4302547.5497564/94‑1 (MQ=60)
AACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGC < SRR4302547.5073114/94‑1 (MQ=60)
AACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGC > SRR4302547.560452/1‑94 (MQ=60)
AACAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGC < SRR4302547.479461/94‑1 (MQ=60)
CAGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTT > SRR4302547.4561241/1‑94 (MQ=60)
AGGCGTTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTT < SRR4302547.1653028/94‑1 (MQ=60)
AGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTT > SRR4302547.1083269/1‑94 (MQ=60)
AGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTT < SRR4302547.5875401/94‑1 (MQ=60)
AGGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTT > SRR4302547.4333223/1‑94 (MQ=60)
GGCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTTC > SRR4302547.5281453/1‑94 (MQ=60)
GCGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTTCG < SRR4302547.989262/94‑1 (MQ=60)
|
AAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACGTTATGAATCTTGCCCGCTTTCG > NC_000913/2118793‑2118978
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
