Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,552,922 |
T→C |
N94S (AAC→AGC) |
yfeG ← |
putative ARAC‑type regulatory protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,552,922 | 0 | T | C | 87.0%
| 718.7
/ 84.3
| 270 | N94S (AAC→AGC) | yfeG | putative ARAC‑type regulatory protein |
| Reads supporting (aligned to +/- strand): ref base T (20/15); new base C (113/122); total (133/137) |
| Fisher's exact test for biased strand distribution p-value = 3.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.58e-01 |
Only 100 of 275 total aligned reads displayed.
CAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACC > NC_000913/2552830‑2553013
|
gggCGGGTGGCGATTTCCGCGCTTCCGAGACATCGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTc < 1:5356626/93‑1 (MQ=255)
gggCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTc < 1:1375043/93‑1 (MQ=255)
gggTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGcc > 2:1903010/1‑93 (MQ=255)
ggTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCa > 2:822523/1‑93 (MQ=255)
gTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAg < 1:4968669/93‑1 (MQ=255)
cGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCa < 2:6419266/93‑1 (MQ=255)
gATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAg > 2:4232580/1‑93 (MQ=255)
gATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAg > 1:2363796/1‑93 (MQ=255)
aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg > 1:3842488/1‑93 (MQ=255)
aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg > 1:5429318/1‑93 (MQ=255)
aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg > 1:6568898/1‑93 (MQ=255)
aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg > 2:3351419/1‑93 (MQ=255)
tttCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGc > 2:498374/1‑93 (MQ=255)
ttCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCa < 1:614994/93‑1 (MQ=255)
cgcgCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGa < 2:1006298/93‑1 (MQ=255)
cgcgCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGa > 2:272493/1‑93 (MQ=255)
gcgcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGAc > 2:2954680/1‑93 (MQ=255)
gcgcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGAc < 2:4194328/93‑1 (MQ=255)
gcgcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGAc > 1:106703/1‑93 (MQ=255)
gcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTg > 2:749760/1‑93 (MQ=255)
cTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGa < 2:5075499/93‑1 (MQ=255)
ttCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGTATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGAc > 2:3800142/1‑93 (MQ=255)
ttCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGAc > 2:1828925/1‑93 (MQ=255)
tCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACg > 1:2310569/1‑93 (MQ=255)
ccAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCa > 1:2418892/1‑93 (MQ=255)
aGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAgc < 1:946652/93‑1 (MQ=255)
aGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAgc < 1:2115248/93‑1 (MQ=255)
aGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAgc > 2:4316974/1‑93 (MQ=255)
gACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAgcg > 1:4419898/1‑93 (MQ=255)
cATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGcc < 2:5791910/93‑1 (MQ=255)
cATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGcc < 1:3383599/93‑1 (MQ=255)
ttGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAg < 1:1682714/93‑1 (MQ=255)
tGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGa < 2:1108737/93‑1 (MQ=255)
gCGAACCGATAAATCCCTGCTCCCCGCGCGGCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc < 1:1709710/93‑1 (MQ=255)
gCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc < 1:4630191/93‑1 (MQ=255)
gCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc < 2:4390962/93‑1 (MQ=255)
gCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc < 2:1541817/93‑1 (MQ=255)
aaCCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCgg > 2:2669970/1‑93 (MQ=255)
aaCCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCgg < 2:2191252/93‑1 (MQ=255)
cGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGgtgt < 1:2617512/93‑1 (MQ=255)
cGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGgtgt < 2:4674559/93‑1 (MQ=255)
gATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTa < 2:3454618/93‑1 (MQ=255)
aTAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAt > 1:1235613/1‑93 (MQ=255)
tAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAtt < 1:6393098/93‑1 (MQ=255)
tAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAtt < 2:4741078/93‑1 (MQ=255)
aaaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTc > 1:6329719/1‑93 (MQ=255)
aaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCa > 1:5671225/1‑93 (MQ=255)
aaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCa < 1:2211666/93‑1 (MQ=255)
aaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCa > 2:6349644/1‑93 (MQ=255)
aTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCAc > 2:5543874/1‑93 (MQ=255)
aTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATCCAc > 2:1722215/1‑93 (MQ=255)
tCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACg > 2:4819185/1‑93 (MQ=255)
tGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGaaaa < 1:2965650/93‑1 (MQ=255)
gCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGaaaaa > 1:4613679/1‑93 (MQ=255)
cTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAc > 1:1518608/1‑93 (MQ=255)
tCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAcc < 2:3594504/93‑1 (MQ=255)
tCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAcc > 1:2695182/1‑93 (MQ=255)
tCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAcc > 2:6075151/1‑93 (MQ=255)
cACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCt < 1:3181937/93‑1 (MQ=255)
cACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCt > 1:3643374/1‑93 (MQ=255)
cACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCt < 1:3026670/93‑1 (MQ=255)
ccGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGa < 2:5348125/93‑1 (MQ=255)
cgcgcgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGaa > 2:6588917/1‑93 (MQ=255)
cgcgcgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGaa < 1:690626/93‑1 (MQ=255)
gcgcgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAat > 2:2348116/1‑93 (MQ=255)
gcgcgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAat > 1:6639325/1‑93 (MQ=255)
cgcgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAata < 2:1247411/93‑1 (MQ=255)
gcgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAatat > 2:2233325/1‑93 (MQ=255)
gcgTCGCCGGAATGCCAAACCAGAACGAGCTCGTCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAatat < 2:6581738/93‑1 (MQ=255)
cgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGCTGTATTCACGAAAAACCTGAATatc > 1:4877588/1‑93 (MQ=255)
cgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatc > 2:656798/1‑93 (MQ=255)
tCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcat > 2:3040688/1‑93 (MQ=255)
tCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcat < 1:762168/93‑1 (MQ=255)
tCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcat > 2:3076760/1‑93 (MQ=255)
cGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcatc < 1:1022767/93‑1 (MQ=255)
gCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCg > 1:6437344/1‑93 (MQ=255)
ccGCAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGa < 2:3680648/93‑1 (MQ=255)
cGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAg < 2:2896847/93‑1 (MQ=255)
cGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAg < 1:3107754/93‑1 (MQ=255)
ggAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAga > 1:5528397/1‑92 (MQ=255)
ggAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGt > 1:1345047/1‑93 (MQ=255)
gAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTa < 2:4559421/93‑1 (MQ=255)
gAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTa < 1:1983492/93‑1 (MQ=255)
aTGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGa < 2:4922/93‑1 (MQ=255)
tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa < 2:3895841/93‑1 (MQ=255)
tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa < 1:5131295/93‑1 (MQ=255)
tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa > 2:1294404/1‑93 (MQ=255)
tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa < 2:5947167/93‑1 (MQ=255)
ccAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAAtt < 1:1121906/93‑1 (MQ=255)
aaaCCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTc < 1:5693029/93‑1 (MQ=255)
aaaCCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTc > 2:1678376/1‑93 (MQ=255)
aaaCCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATAATCGAGTAGAATTTc > 2:5657627/1‑93 (MQ=255)
ccAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGt < 1:5914091/93‑1 (MQ=255)
ccAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGt < 2:1375545/93‑1 (MQ=255)
aGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTaa < 2:2492502/93‑1 (MQ=255)
gAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTaaa < 2:1059916/93‑1 (MQ=255)
aaCGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAAt > 1:3587086/1‑93 (MQ=255)
aCGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAAtt < 1:4027548/93‑1 (MQ=255)
aCGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAAtt < 1:6623977/93‑1 (MQ=255)
gAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCa < 1:4257068/93‑1 (MQ=255)
|
CAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACC > NC_000913/2552830‑2553013
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACCA > NC_000913/2552829‑2553014
|
CCAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGT < SRR4302547.25477/94‑1 (MQ=60)
CCAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGC > SRR4302547.1478812/1‑94 (MQ=60)
CAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTT < SRR4302547.4301938/94‑1 (MQ=60)
CAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTT < SRR4302547.3163634/94‑1 (MQ=60)
CAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCT < SRR4302547.2857010/94‑1 (MQ=60)
AGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTC < SRR4302547.6483459/94‑1 (MQ=60)
AGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTC > SRR4302547.4132182/1‑94 (MQ=60)
AGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTC < SRR4302547.6391970/94‑1 (MQ=60)
GGGCGGGTGGCGATTTCCGCGCTTCCGAGACATCGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCG < SRR4302547.5467116/94‑1 (MQ=60)
GGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCG < SRR4302547.1402614/94‑1 (MQ=60)
GGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCG > SRR4302547.6617355/1‑94 (MQ=60)
GGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGGATGCCAAACCAGAACGAGCTCGG > SRR4302547.3869218/1‑94 (MQ=60)
CGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCC < SRR4302547.4715925/94‑1 (MQ=60)
CGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCC > SRR4302547.5629279/1‑94 (MQ=60)
GGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCA < SRR4302547.3055912/94‑1 (MQ=60)
AGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCA > SRR4302547.6770794/1‑94 (MQ=60)
GGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAG < SRR4302547.1285658/94‑1 (MQ=60)
GGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAG > SRR4302547.3670894/1‑94 (MQ=60)
GTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGA < SRR4302547.5071489/94‑1 (MQ=60)
GGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAGCCAGAACGAGCTCGGCCAGACC < SRR4302547.174155/94‑1 (MQ=60)
GGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACC > SRR4302547.2372945/1‑94 (MQ=60)
CGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAG < SRR4302547.6244059/94‑1 (MQ=60)
CGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAG > SRR4302547.2411718/1‑94 (MQ=60)
CGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAG > SRR4302547.5056474/1‑94 (MQ=60)
GATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGG > SRR4302547.5541578/1‑94 (MQ=60)
GATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGG > SRR4302547.3920743/1‑94 (MQ=60)
GATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGG > SRR4302547.6705667/1‑94 (MQ=60)
TTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCA < SRR4302547.6379996/94‑1 (MQ=60)
TTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCAC > SRR4302547.2093348/1‑94 (MQ=60)
TTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCAC < SRR4302547.626388/94‑1 (MQ=60)
CGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGAC > SRR4302547.108655/1‑94 (MQ=60)
GCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACT > SRR4302547.5223247/1‑94 (MQ=60)
CGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTG > SRR4302547.4906773/1‑94 (MQ=60)
TTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACG > SRR4302547.2357425/1‑94 (MQ=60)
CCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCA > SRR4302547.2467862/1‑94 (MQ=60)
CCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCA > SRR4302547.1546042/1‑94 (MQ=60)
CCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAG < SRR4302547.596412/94‑1 (MQ=60)
CAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGC < SRR4302547.699127/94‑1 (MQ=60)
CAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGC < SRR4302547.4982331/94‑1 (MQ=60)
AGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCG < SRR4302547.965031/94‑1 (MQ=60)
AGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCG < SRR4302547.2562482/94‑1 (MQ=60)
AGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCG < SRR4302547.2157397/94‑1 (MQ=60)
AGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCG > SRR4302547.4511156/1‑94 (MQ=60)
ACATTGCGGACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAGCGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCC < SRR4302547.3693687/94‑1 (MQ=60)
ACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCC > SRR4302547.5410244/1‑94 (MQ=60)
CATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCA < SRR4302547.2712010/94‑1 (MQ=60)
CATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCA < SRR4302547.3452375/94‑1 (MQ=60)
TTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGA < SRR4302547.1715843/94‑1 (MQ=60)
GCGAACCGATAAATCCCTGCTCCCCGCGCGGCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACC < SRR4302547.1743328/94‑1 (MQ=60)
GCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACC < SRR4302547.4726096/94‑1 (MQ=60)
CGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCG > SRR4302547.1721194/1‑94 (MQ=60)
CGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCG > SRR4302547.5923132/1‑94 (MQ=60)
CGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCG > SRR4302547.2439664/1‑94 (MQ=60)
AACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGT > SRR4302547.1057429/1‑94 (MQ=60)
CGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTA < SRR4302547.3156862/94‑1 (MQ=60)
CGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTA > SRR4302547.1736705/1‑94 (MQ=60)
CGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTA > SRR4302547.1106935/1‑94 (MQ=60)
CGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTA > SRR4302547.4419233/1‑94 (MQ=60)
CGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTA < SRR4302547.1697127/94‑1 (MQ=60)
CGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTA < SRR4302547.2670249/94‑1 (MQ=60)
GATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAT < SRR4302547.6727908/94‑1 (MQ=60)
GATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAT > SRR4302547.1260545/1‑94 (MQ=60)
GATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAT < SRR4302547.126796/94‑1 (MQ=60)
ATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATT < SRR4302547.452587/94‑1 (MQ=60)
TAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTC < SRR4302547.6526474/94‑1 (MQ=60)
TAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTC > SRR4302547.6461396/1‑94 (MQ=60)
AAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCA > SRR4302547.6713537/1‑94 (MQ=60)
AAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCA > SRR4302547.5788327/1‑94 (MQ=60)
AATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCAC < SRR4302547.2256146/94‑1 (MQ=60)
AATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCAC < SRR4302547.2239378/94‑1 (MQ=60)
ATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACG < SRR4302547.69136/94‑1 (MQ=60)
ATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACG > SRR4302547.969835/1‑94 (MQ=60)
ATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACG > SRR4302547.5099346/1‑94 (MQ=60)
CCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAA > SRR4302547.2426325/1‑94 (MQ=60)
CTGCTCCCCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAA < SRR4302547.2621335/94‑1 (MQ=60)
CTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAA < SRR4302547.6670141/94‑1 (MQ=60)
TGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAA > SRR4302547.4709188/1‑94 (MQ=60)
TGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAA < SRR4302547.3024675/94‑1 (MQ=60)
TGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAA > SRR4302547.1449041/1‑94 (MQ=60)
GCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAC > SRR4302547.5807237/1‑94 (MQ=60)
GCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAC < SRR4302547.2309143/94‑1 (MQ=60)
GCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAC > SRR4302547.1548854/1‑94 (MQ=60)
CTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACC > SRR4302547.2749294/1‑94 (MQ=60)
CTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACC > SRR4302547.1378054/1‑94 (MQ=60)
CTCACCGCGCGTCGCCGGAATACCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACC > SRR4302547.6531017/1‑94 (MQ=60)
TCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCT > SRR4302547.95663/1‑94 (MQ=60)
TCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCT > SRR4302547.3717686/1‑94 (MQ=60)
CACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTG < SRR4302547.3245350/94‑1 (MQ=60)
CACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTG < SRR4302547.3086851/94‑1 (MQ=60)
ACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGA < SRR4302547.740438/94‑1 (MQ=60)
CGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAAT > SRR4302547.3186771/1‑94 (MQ=60)
CGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAAT > SRR4302547.6777515/1‑94 (MQ=60)
CGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAAT < SRR4302547.703374/94‑1 (MQ=60)
GCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATA > SRR4302547.4817744/1‑94 (MQ=60)
GCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATA < SRR4302547.2723312/94‑1 (MQ=60)
CGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATAT < SRR4302547.2807307/94‑1 (MQ=60)
CGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATAT < SRR4302547.1207761/94‑1 (MQ=60)
GCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATC < SRR4302547.2089726/94‑1 (MQ=60)
GCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGCTGTATTCACGAAAAACCTGAATATC > SRR4302547.4978640/1‑94 (MQ=60)
GCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATC > SRR4302547.1258951/1‑94 (MQ=60)
CGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCA > SRR4302547.395309/1‑94 (MQ=60)
GTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCAT > SRR4302547.5685534/1‑94 (MQ=60)
GTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCAT > SRR4302547.5728285/1‑94 (MQ=60)
GTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCAT < SRR4302547.616940/94‑1 (MQ=60)
TCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATC < SRR4302547.776541/94‑1 (MQ=60)
TCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCACC < SRR4302547.230617/94‑1 (MQ=60)
CGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCG > SRR4302547.6571506/1‑94 (MQ=60)
CGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCG < SRR4302547.1042832/94‑1 (MQ=60)
CGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGT > SRR4302547.1372064/1‑94 (MQ=60)
CGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGT < SRR4302547.3169341/94‑1 (MQ=60)
CGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGA > SRR4302547.5642521/1‑94 (MQ=60)
GGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTA > SRR4302547.376250/1‑94 (MQ=60)
GGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTA > SRR4302547.960055/1‑94 (MQ=60)
GAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAG < SRR4302547.2022885/94‑1 (MQ=60)
AATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGA < SRR4302547.216875/94‑1 (MQ=60)
AATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGA > SRR4302547.3182604/1‑94 (MQ=60)
ATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAA < SRR4302547.3430829/94‑1 (MQ=60)
TGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAAT < SRR4302547.5925366/94‑1 (MQ=60)
TGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAAT > SRR4302547.5501203/1‑94 (MQ=60)
TGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAACCCTGAATATCATCGAGTAGAAT < SRR4302547.6558957/94‑1 (MQ=60)
TGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAAT < SRR4302547.5237019/94‑1 (MQ=60)
TGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAAT < SRR4302547.3460051/94‑1 (MQ=60)
CCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTT < SRR4302547.1144530/94‑1 (MQ=60)
CAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTC > SRR4302547.1661515/1‑94 (MQ=60)
AAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCC > SRR4302547.443916/1‑94 (MQ=60)
AAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCC < SRR4302547.5810613/94‑1 (MQ=60)
AAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCC < SRR4302547.1113705/94‑1 (MQ=60)
AAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCC > SRR4302547.5638629/1‑94 (MQ=60)
AACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCG < SRR4302547.716840/94‑1 (MQ=60)
CCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTA > SRR4302547.3084181/1‑94 (MQ=60)
CCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTA > SRR4302547.4577236/1‑94 (MQ=60)
CCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTA < SRR4302547.6036623/94‑1 (MQ=60)
GAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAAT > SRR4302547.3660266/1‑94 (MQ=60)
AACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATT < SRR4302547.6312671/94‑1 (MQ=60)
ACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTC < SRR4302547.6761865/94‑1 (MQ=60)
ACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTC < SRR4302547.4109374/94‑1 (MQ=60)
GAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCAC < SRR4302547.5503496/94‑1 (MQ=60)
GAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCAC < SRR4302547.4344180/94‑1 (MQ=60)
GAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCAC > SRR4302547.81307/1‑94 (MQ=60)
AGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACC > SRR4302547.3629089/1‑94 (MQ=60)
AGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACC < SRR4302547.5159501/94‑1 (MQ=60)
GCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACCA < SRR4302547.5576953/94‑1 (MQ=60)
GCTCGGCCACACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACCA < SRR4302547.3258333/94‑1 (MQ=60)
|
CCAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACCA > NC_000913/2552829‑2553014
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
