Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,781,027	C→G	intergenic (‑151/+58)	ypjA ← / ← b2648	putative ATP‑binding component of a transport system/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,781,027	0	C	G	100.0%	783.2 / NA	229	intergenic (‑151/+58)	ypjA/b2648	putative ATP‑binding component of a transport system/hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (120/109); total (120/109)

Only 100 of 229 total aligned reads displayed.

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT  >  NC_000913/2780938‑2781116

aaCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCa                                                                                         <  1:6475955/93‑1 (MQ=255)

aaCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCa                                                                                         <  2:1151532/93‑1 (MQ=255)

aaCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCa                                                                                         <  2:3900568/93‑1 (MQ=255)

 aCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaa                                                                                        >  2:3606264/1‑93 (MQ=255)

 aCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaa                                                                                        >  2:2771747/1‑93 (MQ=255)

 aCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaa                                                                                        <  1:5818935/93‑1 (MQ=255)

   gCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaa                                                                                      >  2:3768632/1‑93 (MQ=255)

      gTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaataa                                                                                   <  2:819488/93‑1 (MQ=255)

        gcgcTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaataaaa                                                                                 <  2:3362392/93‑1 (MQ=25)

          gcTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATg                                                                               <  1:6178298/93‑1 (MQ=25)

          gcTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATg                                                                               <  2:3669182/93‑1 (MQ=25)

           cTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGa                                                                              <  2:5024286/93‑1 (MQ=25)

            tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAt                                                                             >  2:2642376/1‑93 (MQ=255)

             gAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAtt                                                                            >  1:4293069/1‑93 (MQ=255)

             gAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAtt                                                                            >  2:3489541/1‑93 (MQ=255)

              aaGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAttt                                                                           <  1:4244109/93‑1 (MQ=25)

              aaGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAttt                                                                           <  2:3100963/93‑1 (MQ=37)

               aGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTa                                                                          <  2:6494621/93‑1 (MQ=255)

               aGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTa                                                                          <  2:734073/93‑1 (MQ=37)

                gtgtGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTAc                                                                         <  1:223281/93‑1 (MQ=37)

                gtgtGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTAc                                                                         >  2:1036110/1‑93 (MQ=255)

                gtgtGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTAc                                                                         <  2:3231103/93‑1 (MQ=255)

                   tgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATa                                                                      >  2:4329456/1‑93 (MQ=255)

                    ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATaa                                                                     <  1:3858290/93‑1 (MQ=37)

                    ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATaa                                                                     <  1:5280225/93‑1 (MQ=37)

                    ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATaa                                                                     >  1:6358835/1‑93 (MQ=255)

                     gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAt                                                                    <  1:5754862/93‑1 (MQ=37)

                      ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATc                                                                   <  1:5038815/93‑1 (MQ=37)

                       tGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCg                                                                  >  1:930320/1‑93 (MQ=255)

                        ggATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGt                                                                 >  1:6572737/1‑93 (MQ=255)

                        ggATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGt                                                                 <  1:5990448/93‑1 (MQ=255)

                        ggATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGt                                                                 <  2:2727456/93‑1 (MQ=255)

                         gATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGtt                                                                <  1:4721736/93‑1 (MQ=255)

                           tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                              >  1:3939064/1‑93 (MQ=255)

                           tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                              >  2:5885589/1‑93 (MQ=255)

                            aaaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCt                                                             >  2:5144666/1‑93 (MQ=255)

                             aaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtg                                                            >  2:1279650/1‑93 (MQ=255)

                             aaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtg                                                            <  1:256114/93‑1 (MQ=255)

                              aaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtga                                                           >  1:1959420/1‑93 (MQ=255)

                               aaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgat                                                          >  1:4997452/1‑93 (MQ=255)

                               aaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgat                                                          >  2:3038612/1‑93 (MQ=255)

                                 aGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatga                                                        <  1:772945/93‑1 (MQ=255)

                                 aGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatga                                                        >  2:91145/1‑93 (MQ=255)

                                  gTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGaa                                                       >  2:2203097/1‑93 (MQ=255)

                                    cAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAata                                                     <  2:1180798/93‑1 (MQ=255)

                                     aaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat                                                    <  2:4092850/93‑1 (MQ=255)

                                       tCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtct                                                  <  1:5193111/93‑1 (MQ=25)

                                       tCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtct                                                  >  1:5131547/1‑93 (MQ=255)

                                       tCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtct                                                  >  1:2721997/1‑93 (MQ=255)

                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                <  2:4274858/93‑1 (MQ=25)

                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                <  1:2822627/93‑1 (MQ=25)

                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                >  2:5813582/1‑93 (MQ=255)

                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTGCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                <  1:2059004/93‑1 (MQ=21)

                                          aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                               <  1:2474217/93‑1 (MQ=255)

                                          aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                               >  2:4392048/1‑93 (MQ=255)

                                           ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTg                                              <  2:5742393/93‑1 (MQ=255)

                                           ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGCTTCTGATGAATATCTTCTg                                              >  1:3935551/1‑93 (MQ=21)

                                              aGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTc                                           <  2:1637320/93‑1 (MQ=255)

                                              aGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACACAATCGTTTCTGATGAATATCTTCTGCTc                                           <  1:1113292/93‑1 (MQ=21)

                                               ggAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTca                                          >  2:4546146/1‑93 (MQ=255)

                                                gAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTcac                                         >  2:540741/1‑93 (MQ=255)

                                                gAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTcac                                         >  2:6119124/1‑93 (MQ=255)

                                                  aaTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACAt                                       >  2:6301856/1‑93 (MQ=18)

                                                   aTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGATTCTGATGCATATCTTCTGCTCACATa                                      >  2:3329027/1‑93 (MQ=18)

                                                     aCGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaa                                    >  1:2942707/1‑93 (MQ=18)

                                                      cGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaa                                   >  2:229482/1‑93 (MQ=255)

                                                       gggCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaaa                                  <  2:3952888/93‑1 (MQ=255)

                                                        ggCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAACAAt                                 >  2:665931/1‑93 (MQ=18)

                                                        ggCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAAt                                 <  2:5553060/93‑1 (MQ=255)

                                                         gCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATc                                <  1:1487126/93‑1 (MQ=18)

                                                           gTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcac                              <  2:5702959/93‑1 (MQ=18)

                                                           gTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcac                              <  1:4424408/93‑1 (MQ=255)

                                                              ttcttttcttTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacaca                           >  1:3357237/1‑93 (MQ=255)

                                                               tcttttctttCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACaa                          <  1:54277/93‑1 (MQ=255)

                                                               tcttttctttCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACaa                          <  1:3666794/93‑1 (MQ=255)

                                                                     ctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                    <  2:5613321/93‑1 (MQ=17)

                                                                     ctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                    >  2:315192/1‑93 (MQ=17)

                                                                      tttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACttt                   >  1:138036/1‑93 (MQ=17)

                                                                      tttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACttt                   >  1:2384070/1‑93 (MQ=255)

                                                                        tcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTga                 <  1:2952656/93‑1 (MQ=255)

                                                                        tcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTga                 >  2:6184970/1‑93 (MQ=17)

                                                                        tcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTga                 <  1:1680358/93‑1 (MQ=255)

                                                                        tcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTga                 <  1:5317161/93‑1 (MQ=255)

                                                                          gACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgaga               >  1:3404282/1‑93 (MQ=18)

                                                                           aCAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt              >  2:155430/1‑93 (MQ=18)

                                                                             aaTGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCg            >  1:3023076/1‑93 (MQ=18)

                                                                                gaggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAg         >  2:4563181/4‑93 (MQ=255)

                                                                                 aggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGa        <  1:2394155/91‑1 (MQ=255)

                                                                                  ggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAt       >  1:71544/2‑93 (MQ=255)

                                                                                  ggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAt       >  2:4060790/2‑93 (MQ=255)

                                                                                  ggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAt       <  1:4712001/92‑1 (MQ=255)

                                                                                  ggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAt       <  1:1264280/92‑1 (MQ=255)

                                                                                  ggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAt       >  2:5670135/2‑93 (MQ=255)

                                                                                     cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    >  2:5515313/1‑93 (MQ=255)

                                                                                     cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    >  2:5079700/1‑93 (MQ=255)

                                                                                     cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    >  2:4688514/1‑93 (MQ=255)

                                                                                      gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   <  1:4133470/93‑1 (MQ=255)

                                                                                      gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   >  1:3150143/1‑93 (MQ=255)

                                                                                       ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  1:3954885/1‑93 (MQ=255)

                                                                                       ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  2:4840119/1‑93 (MQ=255)

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT  >  NC_000913/2780938‑2781116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑G‑CCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  NC_000913/2780937‑2781120

AAACGCAGTGCGTTGAAGTGTGGTTGGATAAAAAAGGCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCA                                                                                             <  SRR4302547.5252707/94‑1 (MQ=60)

 AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAA                                                                                            <  SRR4302547.6610795/94‑1 (MQ=60)

  ACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAA                                                                                           <  SRR4302547.5939322/94‑1 (MQ=60)

  ACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAA                                                                                           >  SRR4302547.2121890/1‑94 (MQ=60)

   atcatgacgcttaacgtttgtgtGATAAAACAGTCAATCCATTCAGGAAATACGGGCGTATTCTGTTCGTGCGAGAATGATG‑CCGTTGGCAAAA                                                                                          <  SRR4302547.4193255/71‑1 (MQ=33)

      AGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAA                                                                                       <  SRR4302547.5353400/94‑1 (MQ=60)

        TGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAA                                                                                     <  SRR4302547.3262949/94‑1 (MQ=60)

         GCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAAT                                                                                    >  SRR4302547.243701/1‑94 (MQ=60)

          CGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATG                                                                                   >  SRR4302547.1583747/1‑94 (MQ=60)

          CGCTGAAGTGTAGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATG                                                                                   >  SRR4302547.2466567/1‑94 (MQ=60)

           GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGA                                                                                  >  SRR4302547.4219292/1‑94 (MQ=60)

           GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGA                                                                                  <  SRR4302547.6306535/94‑1 (MQ=60)

            CTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGAT                                                                                 <  SRR4302547.344673/94‑1 (MQ=60)

             TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATT                                                                                >  SRR4302547.4381317/1‑94 (MQ=60)

             TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATT                                                                                <  SRR4302547.3282305/94‑1 (MQ=60)

             TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATT                                                                                <  SRR4302547.5773024/94‑1 (MQ=60)

               AAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTA                                                                              <  SRR4302547.1136753/94‑1 (MQ=60)

               AAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTA                                                                              <  SRR4302547.4330914/94‑1 (MQ=60)

                AGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTAC                                                                             >  SRR4302547.4356981/1‑94 (MQ=60)

                AGTGTGGTTGGATAAAAAAGTCAATCCATACAGGTAAGACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCCGGTGGCAAAATAAAACGATTTAC                                                                             <  SRR4302547.5125613/94‑1 (MQ=60)

                 GTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACA                                                                            <  SRR4302547.227480/94‑1 (MQ=60)

                   GTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATA                                                                          <  SRR4302547.3901675/94‑1 (MQ=60)

                    TGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAA                                                                         >  SRR4302547.6491453/1‑94 (MQ=60)

                     GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAAT                                                                        <  SRR4302547.3936813/94‑1 (MQ=60)

                     GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAAT                                                                        <  SRR4302547.5389133/94‑1 (MQ=60)

                     GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAAT                                                                        >  SRR4302547.5888778/1‑94 (MQ=60)

                     GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAAT                                                                        >  SRR4302547.2565740/1‑94 (MQ=60)

                      GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATC                                                                       <  SRR4302547.6306707/94‑1 (MQ=60)

                      GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATC                                                                       <  SRR4302547.5873842/94‑1 (MQ=60)

                       TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCG                                                                      <  SRR4302547.5142873/94‑1 (MQ=60)

                       TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCG                                                                      >  SRR4302547.948302/1‑94 (MQ=60)

                       TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCG                                                                      <  SRR4302547.3032013/94‑1 (MQ=60)

                        TGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGT                                                                     >  SRR4302547.6709580/1‑94 (MQ=60)

                         GGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTT                                                                    <  SRR4302547.6114727/94‑1 (MQ=60)

                          GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                   <  SRR4302547.4819509/94‑1 (MQ=60)

                          GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                   <  SRR4302547.4507086/94‑1 (MQ=60)

                          GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                   <  SRR4302547.818357/94‑1 (MQ=60)

                           ATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTC                                                                  <  SRR4302547.4779908/94‑1 (MQ=60)

                           ATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTC                                                                  >  SRR4302547.4019155/1‑94 (MQ=60)

                             AAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTG                                                                <  SRR4302547.5102763/94‑1 (MQ=60)

                              AAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGA                                                               <  SRR4302547.2079553/94‑1 (MQ=60)

                              AAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGA                                                               >  SRR4302547.1998317/1‑94 (MQ=60)

                              AAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGA                                                               <  SRR4302547.260909/94‑1 (MQ=60)

                               AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                              >  SRR4302547.5100787/1‑94 (MQ=60)

                                 AAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGA                                                            >  SRR4302547.5990169/1‑94 (MQ=60)

                                  AGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAA                                                           <  SRR4302547.787556/94‑1 (MQ=60)

                                    TCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATA                                                         <  SRR4302547.2390248/94‑1 (MQ=60)

                                    TCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATA                                                         <  SRR4302547.1346914/94‑1 (MQ=60)

                                      AATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATC                                                       >  SRR4302547.2618967/1‑94 (MQ=60)

                                       ATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCT                                                      >  SRR4302547.5237275/1‑94 (MQ=60)

                                       ATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCT                                                      >  SRR4302547.2776658/1‑94 (MQ=60)

                                        TCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTT                                                     <  SRR4302547.5299990/94‑1 (MQ=60)

                                         CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                    >  SRR4302547.6308212/1‑94 (MQ=60)

                                         CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                    >  SRR4302547.2865238/1‑94 (MQ=60)

                                          CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302547.3913224/94‑1 (MQ=60)

                                          CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   >  SRR4302547.1909360/1‑94 (MQ=60)

                                          CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302547.6769412/94‑1 (MQ=60)

                                          CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302547.2879088/94‑1 (MQ=60)

                                          CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302547.541515/94‑1 (MQ=60)

                                          CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   >  SRR4302547.5387411/1‑94 (MQ=60)

                                          CATTCAGGAAATACGGGCGTATTCTTTTCTTGCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302547.2100090/94‑1 (MQ=60)

                                           ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                  >  SRR4302547.4189674/1‑94 (MQ=60)

                                           ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                  <  SRR4302547.2524243/94‑1 (MQ=60)

                                           ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGCTTCTGATGAATATCTTCTG                                                  >  SRR4302547.4015588/1‑94 (MQ=60)

                                             TCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCT                                                >  SRR4302547.4076755/1‑94 (MQ=60)

                                              CAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTtattttgccaacggcctcat                                               <  SRR4302547.3279892/94‑21 (MQ=60)

                                              CAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTC                                               <  SRR4302547.479988/94‑1 (MQ=60)

                                               AGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCA                                              >  SRR4302547.2926962/1‑94 (MQ=60)

                                               AGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACACAATCGTTTCTGATGAATATCTTCTGCTCA                                              <  SRR4302547.1135715/94‑1 (MQ=60)

                                                     TACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGTATATCTTCTGCTCACATAAA                                        >  SRR4302547.3001332/1‑94 (MQ=60)

                                                     TACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAA                                        >  SRR4302547.3001331/1‑94 (MQ=60)

                                                      ACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAA                                       <  SRR4302547.5214206/94‑1 (MQ=60)

                                                        GGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAAT                                     <  SRR4302547.1444077/94‑1 (MQ=60)

                                                        GGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATCAATATCTTCTGCTCACATAAAAAT                                     >  SRR4302547.6657214/1‑94 (MQ=60)

                                                          GCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCA                                   <  SRR4302547.1516813/94‑1 (MQ=60)

                                                            GTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                 <  SRR4302547.4515818/94‑1 (MQ=60)

                                                             TATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                                <  SRR4302547.5402607/94‑1 (MQ=59)

                                                              ATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACA                               <  SRR4302547.1592541/94‑1 (MQ=56)

                                                              ATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACA                               >  SRR4302547.3425335/1‑94 (MQ=56)

                                                               TTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAA                              >  SRR4302547.5238654/1‑94 (MQ=54)

                                                                TCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAT                             <  SRR4302547.55297/94‑1 (MQ=52)

                                                                TCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAT                             <  SRR4302547.3741584/94‑1 (MQ=52)

                                                                TCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAT                             >  SRR4302547.6729877/1‑94 (MQ=52)

                                                                 CTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATA                            <  SRR4302547.2898140/94‑1 (MQ=49)

                                                                    TTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACT                         <  SRR4302547.3941255/94‑1 (MQ=47)

                                                                    TTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACT                         <  SRR4302547.6574130/94‑1 (MQ=47)

                                                                     TCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT                        <  SRR4302547.3557928/94‑1 (MQ=47)

                                                                     TCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT                        <  SRR4302547.5019660/94‑1 (MQ=47)

                                                                      CTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       <  SRR4302547.255632/94‑1 (MQ=49)

                                                                      CTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       >  SRR4302547.140532/1‑94 (MQ=49)

                                                                      CTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       >  SRR4302547.2432368/1‑94 (MQ=49)

                                                                         TCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAG                    <  SRR4302547.3011439/94‑1 (MQ=56)

                                                                         TCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAG                    <  SRR4302547.5426806/94‑1 (MQ=56)

                                                                         TCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAG                    <  SRR4302547.1713442/94‑1 (MQ=56)

                                                                          CGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGA                   >  SRR4302547.3473557/1‑94 (MQ=59)

                                                                            ACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                 >  SRR4302547.6186987/1‑94 (MQ=60)

                                                                             CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302547.3083188/1‑94 (MQ=60)

                                                                             CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302547.4020885/1‑94 (MQ=60)

                                                                             CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302547.439307/1‑94 (MQ=60)

                                                                               ATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCA              >  SRR4302547.963595/1‑94 (MQ=60)

                                                                                  agG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           >  SRR4302547.72891/3‑94 (MQ=60)

                                                                                  agG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           <  SRR4302547.2442651/92‑1 (MQ=60)

                                                                                  G‑G‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATT          <  SRR4302547.1289739/94‑1 (MQ=60)

                                                                                  G‑G‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATT          <  SRR4302547.772622/94‑1 (MQ=60)

                                                                                  G‑G‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATT          <  SRR4302547.4809562/94‑1 (MQ=60)

                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       <  SRR4302547.4017828/94‑1 (MQ=60)

                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       >  SRR4302547.3212746/1‑94 (MQ=60)

                                                                                        GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      <  SRR4302547.4217571/94‑1 (MQ=60)

                                                                                        GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      >  SRR4302547.4035330/1‑94 (MQ=60)

                                                                                        GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      <  SRR4302547.3191421/94‑1 (MQ=60)

                                                                                        GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      >  SRR4302547.5584948/1‑94 (MQ=60)

                                                                                         TTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTT     <  SRR4302547.2154325/94‑1 (MQ=60)

                                                                                          TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA    >  SRR4302547.4177594/1‑94 (MQ=60)

                                                                                          TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA    >  SRR4302547.2787110/1‑94 (MQ=60)

                                                                                          TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA    <  SRR4302547.2722887/94‑1 (MQ=60)

                                                                                           GGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTAC   <  SRR4302547.3286009/94‑1 (MQ=60)

                                                                                           GGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTAC   >  SRR4302547.4367479/1‑94 (MQ=60)

                                                                                            GCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  SRR4302547.3949461/1‑94 (MQ=60)

                                                                                            GCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  <  SRR4302547.6305294/94‑1 (MQ=60)

                                                                                            GCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  SRR4302547.852930/1‑94 (MQ=60)

AAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑G‑CCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  NC_000913/2780937‑2781120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`