Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,908,853 T→C G87G (GGA→GGG)  chpA ← ChpA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,908,8530TC100.0% 1035.9 / NA 282G87G (GGA→GGG) chpAChpA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (139/143);  total (139/143)

Only 100 of 295 total aligned reads displayed.

AGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCTCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATA  >  NC_000913/2908763‑2908942
                                                                                          |                                                                                         
  tGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGcccctc                                                                                       >  1:4869112/1‑93 (MQ=255)
   gAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCctct                                                                                      >  1:1093336/1‑93 (MQ=255)
   gAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCctct                                                                                      <  2:3928575/93‑1 (MQ=255)
   gAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCctct                                                                                      <  2:2502495/93‑1 (MQ=255)
   gAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCctct                                                                                      <  2:2190089/93‑1 (MQ=255)
    aGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCtt                                                                                     >  1:2907554/1‑93 (MQ=255)
     gTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTg                                                                                    >  1:5225462/1‑93 (MQ=255)
      ttAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGc                                                                                   <  2:6528802/93‑1 (MQ=255)
      ttAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGc                                                                                   >  2:2613663/1‑93 (MQ=255)
       tAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGcc                                                                                  >  2:956233/1‑93 (MQ=255)
           aaCACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGcc                                                                              >  2:3611747/1‑93 (MQ=255)
             cacTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAg                                                                            >  1:6044847/1‑93 (MQ=255)
             cacTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAg                                                                            <  2:4372717/93‑1 (MQ=255)
             cacTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAg                                                                            <  2:696937/93‑1 (MQ=255)
              acTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAgg                                                                           <  2:347698/93‑1 (MQ=255)
               cTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGc                                                                          >  1:2030455/1‑93 (MQ=255)
               cTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGc                                                                          >  1:3700205/1‑93 (MQ=255)
                tACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCg                                                                         <  1:3736635/93‑1 (MQ=255)
                 aCCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGa                                                                        <  1:5963686/93‑1 (MQ=255)
                  cccAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGAt                                                                       >  1:5600996/1‑93 (MQ=255)
                  cccAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGAt                                                                       <  2:1532010/93‑1 (MQ=255)
                   ccAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATa                                                                      >  1:5367283/1‑93 (MQ=255)
                    cAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATAc                                                                     >  1:1921601/1‑93 (MQ=255)
                       tCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACttt                                                                  >  1:3079809/1‑93 (MQ=255)
                        cAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACtttt                                                                 <  1:3531637/93‑1 (MQ=255)
                        cAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACtttt                                                                 <  1:719988/93‑1 (MQ=255)
                         aGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACttttt                                                                <  2:3110286/93‑1 (MQ=255)
                         aGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACttttt                                                                <  2:5861250/93‑1 (MQ=255)
                          gTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTa                                                               >  1:4689868/1‑93 (MQ=255)
                          gTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTa                                                               >  2:45451/1‑93 (MQ=255)
                          gTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTa                                                               >  1:1023968/1‑93 (MQ=255)
                           tACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTAc                                                              <  2:780486/93‑1 (MQ=255)
                            aCGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTAcc                                                             <  2:3864262/93‑1 (MQ=255)
                             cGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCt                                                            <  1:5626408/93‑1 (MQ=255)
                              gTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTg                                                           >  2:5257510/1‑93 (MQ=255)
                              gTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTg                                                           <  2:6255835/93‑1 (MQ=255)
                              gTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTg                                                           <  1:4542653/93‑1 (MQ=255)
                               ttAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGa                                                          <  2:3261026/93‑1 (MQ=255)
                                tAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGAt                                                         <  2:421723/93‑1 (MQ=255)
                                tAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGAt                                                         <  2:5198749/93‑1 (MQ=255)
                                  aTTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCa                                                       >  2:4996904/1‑93 (MQ=255)
                                   ttttGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAg                                                      >  1:1294652/1‑93 (MQ=255)
                                     ttGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCt                                                    <  1:3243771/93‑1 (MQ=255)
                                     ttGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCt                                                    >  2:2829785/1‑93 (MQ=255)
                                     ttGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCt                                                    <  1:3907636/93‑1 (MQ=255)
                                       ggCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTaa                                                  >  1:4107046/1‑93 (MQ=255)
                                        gCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAAc                                                 <  1:5858062/93‑1 (MQ=255)
                                         cTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACg                                                >  1:2557563/1‑93 (MQ=255)
                                          tttAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGc                                               >  1:4195630/1‑93 (MQ=255)
                                          tttAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGc                                               <  2:286536/93‑1 (MQ=255)
                                            tAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTa                                             >  2:3192191/1‑93 (MQ=255)
                                            tAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTa                                             >  2:2121708/1‑93 (MQ=255)
                                             aaTGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTAc                                            <  1:6446008/93‑1 (MQ=255)
                                               tGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGc                                          >  2:3498164/1‑93 (MQ=255)
                                                  gTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCAt                                       <  1:2462725/93‑1 (MQ=255)
                                                   ttGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATc                                      <  1:3661945/93‑1 (MQ=255)
                                                     ttAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCATGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCAc                                    <  2:1723404/92‑1 (MQ=255)
                                                     gTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCAc                                    >  2:2994109/1‑93 (MQ=255)
                                                     gTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCAc                                    <  2:6391323/93‑1 (MQ=255)
                                                     gTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCAc                                    >  1:2590520/1‑93 (MQ=255)
                                                      tAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACg                                   >  1:575408/1‑93 (MQ=255)
                                                       aaTTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGt                                  <  1:1381478/93‑1 (MQ=255)
                                                        aTTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGtt                                 >  2:5971240/1‑93 (MQ=255)
                                                        aTTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGtt                                 <  2:1151283/93‑1 (MQ=255)
                                                         ttCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTc                                >  2:2658744/1‑93 (MQ=255)
                                                         ttCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTc                                >  1:803262/1‑93 (MQ=255)
                                                         ttCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTc                                <  2:2714903/93‑1 (MQ=255)
                                                          tCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTcc                               <  2:16780/93‑1 (MQ=255)
                                                          tCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTcc                               >  2:5081732/1‑93 (MQ=255)
                                                             tctGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGa                            >  2:1115063/1‑93 (MQ=255)
                                                              ctGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGAc                           <  2:1026955/93‑1 (MQ=255)
                                                               tGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGAcc                          >  2:897820/1‑93 (MQ=255)
                                                               tGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGAcc                          <  2:2003179/93‑1 (MQ=255)
                                                                ggggCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCg                         <  1:5466260/93‑1 (MQ=255)
                                                                ggggCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCg                         <  2:4103332/93‑1 (MQ=255)
                                                                   gCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGAt                      >  2:1927103/1‑93 (MQ=255)
                                                                   gCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGAt                      <  2:6079318/93‑1 (MQ=255)
                                                                     aaCTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATaa                    >  2:4639360/1‑93 (MQ=255)
                                                                      aCTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATaaa                   <  2:1353482/93‑1 (MQ=255)
                                                                       cTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATaaaa                  <  2:12234/93‑1 (MQ=255)
                                                                       cTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATaaaa                  <  2:3845492/93‑1 (MQ=255)
                                                                        tGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAaac                 <  1:5008869/93‑1 (MQ=255)
                                                                          ttCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAaacaa               >  2:3741454/1‑93 (MQ=255)
                                                                           tCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAaacaac              >  1:2776946/1‑93 (MQ=255)
                                                                              tttCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTc           <  2:4063725/93‑1 (MQ=255)
                                                                               ttcttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCg          <  1:2285116/93‑1 (MQ=255)
                                                                                tcttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGa         <  1:3207042/93‑1 (MQ=255)
                                                                                 cttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGaa        >  1:6142488/1‑93 (MQ=255)
                                                                                 cttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGaa        <  1:2108497/93‑1 (MQ=255)
                                                                                 cttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGaa        >  1:953231/1‑93 (MQ=255)
                                                                                  ttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAAc       <  2:5666268/93‑1 (MQ=255)
                                                                                  ttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAAc       >  1:6227887/1‑93 (MQ=255)
                                                                                  ttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAAc       <  1:6426838/93‑1 (MQ=255)
                                                                                  ttcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAAc       <  1:358937/93‑1 (MQ=255)
                                                                                   tcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACg      <  2:6363782/93‑1 (MQ=255)
                                                                                   tcGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACg      >  1:145240/1‑93 (MQ=255)
                                                                                     gTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGa    >  2:6215415/1‑93 (MQ=255)
                                                                                      ttGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGat   >  2:4538985/1‑93 (MQ=255)
                                                                                      ttGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGat   <  1:4386278/93‑1 (MQ=255)
                                                                                       tGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGata  <  1:5106741/93‑1 (MQ=255)
                                                                                          |                                                                                         
AGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCTCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATA  >  NC_000913/2908763‑2908942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCTCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATCCT  >  NC_000913/2908760‑2908946
                                                                                             |                                                                                             
AGAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCC                                                                                               >  SRR4302547.5731339/1‑94 (MQ=60)
AGAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCC                                                                                               >  SRR4302547.799718/1‑94 (MQ=60)
AGAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCC                                                                                               >  SRR4302547.2233261/1‑94 (MQ=60)
AGAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCC                                                                                               <  SRR4302547.4953547/94‑1 (MQ=60)
 GAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCC                                                                                              <  SRR4302547.5239868/94‑1 (MQ=60)
 GAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCC                                                                                              >  SRR4302547.527125/1‑94 (MQ=60)
 GAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTCTTCCTTTCTTCGTTGCCC                                                                                              >  SRR4302547.6704526/1‑94 (MQ=60)
   AGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCT                                                                                            <  SRR4302547.2385336/94‑1 (MQ=60)
   AGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCT                                                                                            <  SRR4302547.6435207/94‑1 (MQ=60)
    GTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTC                                                                                           <  SRR4302547.4489015/94‑1 (MQ=60)
    GTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTC                                                                                           >  SRR4302547.4970015/1‑94 (MQ=60)
     TGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCT                                                                                          <  SRR4302547.450079/94‑1 (MQ=60)
     TGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCT                                                                                          >  SRR4302547.1115257/1‑94 (MQ=60)
      GAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTT                                                                                         >  SRR4302547.2965536/1‑94 (MQ=60)
      GAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTT                                                                                         <  SRR4302547.5115109/94‑1 (MQ=60)
      GAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTT                                                                                         >  SRR4302547.876965/1‑94 (MQ=60)
      GAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTT                                                                                         <  SRR4302547.777/94‑1 (MQ=60)
      GAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTT                                                                                         <  SRR4302547.815195/94‑1 (MQ=60)
       AGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTG                                                                                        <  SRR4302547.469328/94‑1 (MQ=60)
       AGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTG                                                                                        >  SRR4302547.5333019/1‑94 (MQ=60)
       AGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTG                                                                                        >  SRR4302547.5548727/1‑94 (MQ=60)
       AGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTG                                                                                        <  SRR4302547.5104486/94‑1 (MQ=60)
         TTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCC                                                                                      >  SRR4302547.378641/1‑94 (MQ=60)
         TTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCC                                                                                      <  SRR4302547.4992911/94‑1 (MQ=60)
          TAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCC                                                                                     <  SRR4302547.1640538/94‑1 (MQ=60)
          TAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCC                                                                                     <  SRR4302547.6649007/94‑1 (MQ=60)
          TAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCC                                                                                     >  SRR4302547.4219017/1‑94 (MQ=60)
               ACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAG                                                                                >  SRR4302547.6170273/1‑94 (MQ=60)
                 ACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGC                                                                              >  SRR4302547.3775718/1‑94 (MQ=60)
                 ACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGC                                                                              >  SRR4302547.2070890/1‑94 (MQ=60)
                  CTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCG                                                                             <  SRR4302547.5952183/94‑1 (MQ=60)
                   TACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGA                                                                            <  SRR4302547.3812924/94‑1 (MQ=60)
                   TACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGA                                                                            >  SRR4302547.6119997/1‑94 (MQ=60)
                    ACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGAT                                                                           >  SRR4302547.5716541/1‑94 (MQ=60)
                    ACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGAT                                                                           <  SRR4302547.6087367/94‑1 (MQ=60)
                     CCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATA                                                                          >  SRR4302547.5478041/1‑94 (MQ=60)
                      CCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATAC                                                                         >  SRR4302547.3959660/1‑94 (MQ=60)
                      CCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATAC                                                                         >  SRR4302547.1959652/1‑94 (MQ=60)
                       CAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACT                                                                        >  SRR4302547.5873585/1‑94 (MQ=60)
                         ATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTT                                                                      >  SRR4302547.3140967/1‑94 (MQ=60)
                         ATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTT                                                                      >  SRR4302547.190679/1‑94 (MQ=60)
                          TCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTT                                                                     >  SRR4302547.3671423/1‑94 (MQ=60)
                           CAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTT                                                                    <  SRR4302547.3603747/94‑1 (MQ=60)
                           CAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTT                                                                    >  SRR4302547.4900315/1‑94 (MQ=60)
                           CAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTT                                                                    <  SRR4302547.5828435/94‑1 (MQ=60)
                           CAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTT                                                                    <  SRR4302547.733379/94‑1 (MQ=60)
                            AGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTA                                                                   >  SRR4302547.4786996/1‑94 (MQ=60)
                            AGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTA                                                                   >  SRR4302547.1044067/1‑94 (MQ=60)
                             GTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTAC                                                                  <  SRR4302547.2751138/94‑1 (MQ=60)
                             GTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTAC                                                                  >  SRR4302547.6161716/1‑94 (MQ=60)
                               ACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCT                                                                >  SRR4302547.308515/1‑94 (MQ=60)
                                CGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTG                                                               >  SRR4302547.4861409/1‑94 (MQ=60)
                                CGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTG                                                               <  SRR4302547.413466/94‑1 (MQ=60)
                                CGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTG                                                               <  SRR4302547.5742518/94‑1 (MQ=60)
                                CGTTAATTTTGGCTCTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTG                                                               <  SRR4302547.1077970/94‑1 (MQ=60)
                                 GTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGA                                                              <  SRR4302547.4636572/94‑1 (MQ=60)
                                   TAATTTTGGTTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATC                                                            <  SRR4302547.4154/94‑1 (MQ=60)
                                   TAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATC                                                            <  SRR4302547.2601644/94‑1 (MQ=60)
                                     ATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAAGTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGCCGATACTTTTTACCTGATTAG                                                          >  SRR4302547.3343993/1‑94 (MQ=60)
                                     ATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAG                                                          >  SRR4302547.1974126/1‑94 (MQ=60)
                                     ATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAG                                                          >  SRR4302547.3289413/1‑94 (MQ=60)
                                     ATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAG                                                          >  SRR4302547.570487/1‑94 (MQ=60)
                                     ATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAG                                                          >  SRR4302547.1320714/1‑94 (MQ=60)
                                      TTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGC                                                         <  SRR4302547.2078957/94‑1 (MQ=60)
                                        TTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTA                                                       <  SRR4302547.3308552/94‑1 (MQ=60)
                                        TTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTA                                                       <  SRR4302547.2880165/94‑1 (MQ=60)
                                        TTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTA                                                       <  SRR4302547.3987101/94‑1 (MQ=60)
                                         TGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAA                                                      >  SRR4302547.6305524/1‑94 (MQ=60)
                                         TGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAA                                                      >  SRR4302547.3746865/1‑94 (MQ=60)
                                         TGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAA                                                      >  SRR4302547.4190528/1‑94 (MQ=60)
                                          GGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAAC                                                     >  SRR4302547.257447/1‑94 (MQ=60)
                                           GCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACG                                                    <  SRR4302547.5979290/94‑1 (MQ=60)
                                           GCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACG                                                    >  SRR4302547.2609217/1‑94 (MQ=60)
                                           GCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACG                                                    >  SRR4302547.999994/1‑94 (MQ=60)
                                            CTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGC                                                   >  SRR4302547.4281196/1‑94 (MQ=60)
                                               TAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTAC                                                >  SRR4302547.2954707/1‑94 (MQ=60)
                                                AATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACG                                               <  SRR4302547.1279702/94‑1 (MQ=60)
                                                AATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACG                                               >  SRR4302547.3553722/1‑94 (MQ=60)
                                                AATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACG                                               <  SRR4302547.530362/94‑1 (MQ=60)
                                                AATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACG                                               <  SRR4302547.6580319/94‑1 (MQ=60)
                                                    AGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGCTACTTTTTACCTGATCAGCTAACGCTACGCCAT                                           >  SRR4302547.2406838/1‑94 (MQ=60)
                                                    AGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCAT                                           >  SRR4302547.6268558/1‑94 (MQ=60)
                                                     GTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATC                                          >  SRR4302547.2254789/1‑94 (MQ=60)
                                                     GTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATC                                          <  SRR4302547.2512500/94‑1 (MQ=60)
                                                      TTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCA                                         <  SRR4302547.1425536/94‑1 (MQ=60)
                                                      TTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCA                                         <  SRR4302547.3736644/94‑1 (MQ=60)
                                                      TTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCA                                         <  SRR4302547.5188898/94‑1 (MQ=60)
                                                       TGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCAC                                        <  SRR4302547.6575131/94‑1 (MQ=60)
                                                       TGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCAC                                        <  SRR4302547.6423714/94‑1 (MQ=60)
                                                       TGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCAC                                        >  SRR4302547.2642778/1‑94 (MQ=60)
                                                        GTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACG                                       >  SRR4302547.5240494/1‑94 (MQ=60)
                                                        GTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACG                                       >  SRR4302547.2613800/1‑94 (MQ=60)
                                                        GTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACG                                       >  SRR4302547.585727/1‑94 (MQ=60)
                                                          AATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTT                                     >  SRR4302547.2089436/1‑94 (MQ=60)
                                                          AATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTT                                     <  SRR4302547.5434104/94‑1 (MQ=60)
                                                          AATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTT                                     <  SRR4302547.5872904/94‑1 (MQ=60)
                                                          AATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTT                                     <  SRR4302547.1409161/94‑1 (MQ=60)
                                                          AATTCCTCTGGGGCAACTGTTCCTTGCTTCGTTGCCCCTCTTGCCCGCCAGGCGATCCTTTTTACCTGATCAGCTATCGCTACGCCATCACGTT                                     <  SRR4302547.2150951/94‑1 (MQ=60)
                                                           ATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTC                                    >  SRR4302547.818482/1‑94 (MQ=60)
                                                             TCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCT                                  <  SRR4302547.5981780/94‑1 (MQ=60)
                                                             TCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCT                                  <  SRR4302547.3133998/94‑1 (MQ=60)
                                                              CCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTG                                 >  SRR4302547.3258398/1‑94 (MQ=60)
                                                              CCTCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTG                                 <  SRR4302547.3772825/94‑1 (MQ=60)
                                                                TCTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGAC                               <  SRR4302547.3191932/94‑1 (MQ=60)
                                                                 CTGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACC                              >  SRR4302547.3275406/1‑94 (MQ=60)
                                                                 CTGAGGCAACTGTTCCTTTCATCGTTGCCCGTCTTGCCCGCCAGGCAATACTTTTTACCTGATCAGCTAACGCTACGCCATCGCGTTCCTGACC                              <  SRR4302547.3028266/94‑1 (MQ=60)
                                                                  TGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCG                             >  SRR4302547.2788865/1‑94 (MQ=60)
                                                                  TGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCG                             >  SRR4302547.3704426/1‑94 (MQ=60)
                                                                  TGGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCG                             <  SRR4302547.2062470/94‑1 (MQ=60)
                                                                   GGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGG                            <  SRR4302547.1305686/94‑1 (MQ=60)
                                                                   GGGGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGG                            <  SRR4302547.5579182/94‑1 (MQ=60)
                                                                    gcccacCTGTTCCTTTCTTCGTCGCCCCTCTTGCCCGCCAGGCGATACTATTTACCTGATCAGCTCACGCTACGCCATCACGTTCCCGACCGGA                           <  SRR4302547.4925294/88‑1 (MQ=60)
                                                                     GGCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGAT                          <  SRR4302547.5517192/94‑1 (MQ=60)
                                                                      GCAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATA                         >  SRR4302547.1449618/1‑94 (MQ=60)
                                                                       CAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCGGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAA                        <  SRR4302547.3126342/94‑1 (MQ=60)
                                                                       CAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAA                        <  SRR4302547.6585599/94‑1 (MQ=60)
                                                                       CAACTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAA                        <  SRR4302547.5457063/94‑1 (MQ=60)
                                                                          CTGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAAC                     >  SRR4302547.4252034/1‑94 (MQ=60)
                                                                           TGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACA                    <  SRR4302547.5112432/94‑1 (MQ=60)
                                                                           TGTTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACA                    >  SRR4302547.4764636/1‑94 (MQ=60)
                                                                             TTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAAC                  >  SRR4302547.6568913/1‑94 (MQ=60)
                                                                             TTCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAAC                  >  SRR4302547.2832570/1‑94 (MQ=60)
                                                                              TCCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACT                 >  SRR4302547.907741/1‑94 (MQ=60)
                                                                               CCTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTT                >  SRR4302547.6206204/1‑94 (MQ=60)
                                                                                CTTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTC               <  SRR4302547.3621542/94‑1 (MQ=60)
                                                                                 TTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCG              >  SRR4302547.1327875/1‑94 (MQ=60)
                                                                                 TTTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCG              <  SRR4302547.4357089/94‑1 (MQ=60)
                                                                                  TTCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGA             <  SRR4302547.2331379/94‑1 (MQ=60)
                                                                                   TCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAA            <  SRR4302547.3271008/94‑1 (MQ=60)
                                                                                   TCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAA            >  SRR4302547.971747/1‑94 (MQ=60)
                                                                                   TCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAA            >  SRR4302547.6269938/1‑94 (MQ=60)
                                                                                   TCTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAA            <  SRR4302547.6038219/94‑1 (MQ=60)
                                                                                    CTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAAC           >  SRR4302547.6357232/1‑94 (MQ=60)
                                                                                    CTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAAC           <  SRR4302547.2150497/94‑1 (MQ=60)
                                                                                    CTTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAAC           <  SRR4302547.1341803/94‑1 (MQ=60)
                                                                                     TTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACG          >  SRR4302547.147859/1‑94 (MQ=60)
                                                                                     TTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACG          <  SRR4302547.365598/94‑1 (MQ=60)
                                                                                     TTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACG          <  SRR4302547.6560826/94‑1 (MQ=60)
                                                                                     TTCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACG          <  SRR4302547.2642242/94‑1 (MQ=60)
                                                                                      TCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGG         <  SRR4302547.438863/94‑1 (MQ=60)
                                                                                      TCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGG         <  SRR4302547.5599729/94‑1 (MQ=60)
                                                                                      TCGTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGG         <  SRR4302547.3950202/94‑1 (MQ=60)
                                                                                        GTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGAT       <  SRR4302547.5740165/94‑1 (MQ=60)
                                                                                        GTTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGAT       <  SRR4302547.5653942/94‑1 (MQ=60)
                                                                                         TTGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATA      <  SRR4302547.4476519/94‑1 (MQ=60)
                                                                                          TGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATAT     <  SRR4302547.3650285/94‑1 (MQ=60)
                                                                                          TGCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATAT     <  SRR4302547.5211988/94‑1 (MQ=60)
                                                                                           GCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATC    <  SRR4302547.3213572/94‑1 (MQ=60)
                                                                                           GCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATC    <  SRR4302547.2908056/94‑1 (MQ=60)
                                                                                           GCCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATC    >  SRR4302547.473258/1‑94 (MQ=60)
                                                                                            CCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATCC   >  SRR4302547.2163279/1‑94 (MQ=60)
                                                                                            CCCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATCC   >  SRR4302547.3480711/1‑94 (MQ=60)
                                                                                             CCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATCCT  <  SRR4302547.3044947/94‑1 (MQ=60)
                                                                                             |                                                                                             
AGAAGTGAGTTAGTAACACTACCCAATCAGTACGTTAATTTTGGCTTTAATGAGTTGTAATTCCTCTGGGGCAACTGTTCCTTTCTTCGTTGCTCCTCTTGCCCGCCAGGCGATACTTTTTACCTGATCAGCTAACGCTACGCCATCACGTTCCTGACCGGATAAAACAACTTCGAACGGATATCCT  >  NC_000913/2908760‑2908946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑