Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,974,333 (A)8→7 intergenic (‑297/‑288) aas ← / → galR 2‑acyl‑glycerophospho‑ethanolamine acyltransferase/GalR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,974,3260A.89.4% 848.1 / 105.3 226intergenic (‑290/‑295)aas/galR2‑acyl‑glycerophospho‑ethanolamine acyltransferase/GalR
Reads supporting (aligned to +/- strand):  ref base A (15/9);  new base . (109/93);  total (124/102)
Fisher's exact test for biased strand distribution p-value = 5.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.10e-02

Only 100 of 247 total aligned reads displayed.

CGACTCTTCGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACC  >  NC_000913/2974234‑2974413
                                                                                            |                                                                                       
  cctctTCGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCaaa                                                                                       <  2:6557302/92‑1 (MQ=255)
  acTCTTCGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCaaa                                                                                       >  2:791408/1‑93 (MQ=255)
    tctTCGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCaaaaa                                                                                     >  2:6201532/1‑93 (MQ=255)
       tCGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCaaaaaaac                                                                                  <  2:1866294/93‑2 (MQ=255)
         gCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCaaaaaaacct                                                                                <  1:6637715/93‑4 (MQ=255)
          ccAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCaaaaaaacctg                                                                               <  2:2691128/93‑5 (MQ=255)
          ccAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCaaaaaaacctg                                                                               >  1:5208561/1‑89 (MQ=255)
             gCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTgcg                                                                            >  1:1293003/1‑93 (MQ=255)
               gagaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCAt                                                                         >  2:5552156/1‑93 (MQ=255)
               gagaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCAt                                                                         >  1:2242186/1‑93 (MQ=255)
                agaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATc                                                                        >  2:2750302/1‑93 (MQ=255)
                agaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATc                                                                        >  2:4297680/1‑93 (MQ=255)
                 gaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCt                                                                       <  2:3738748/93‑1 (MQ=255)
                 gaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCt                                                                       >  1:144391/1‑93 (MQ=255)
                 gaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCt                                                                       >  1:369350/1‑93 (MQ=255)
                 gaAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCt                                                                       >  1:3476680/1‑93 (MQ=255)
                  aaaaCGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTg                                                                      >  1:2609112/1‑93 (MQ=255)
                    aaCGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTgcg                                                                    >  1:3487985/1‑93 (MQ=255)
                     aCGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTgcg                                                                    <  1:3720708/93‑1 (MQ=255)
                     aCGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTgcgc                                                                   <  1:3300431/93‑1 (MQ=255)
                      cGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCa                                                                  <  2:690574/93‑1 (MQ=255)
                        cAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAgg                                                                >  2:5629617/1‑93 (MQ=255)
                         aaaGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGc                                                               >  1:5093746/1‑93 (MQ=255)
                         aaaGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGc                                                               >  1:4766890/1‑93 (MQ=255)
                          aaGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCt                                                              >  1:456127/1‑93 (MQ=255)
                           aGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTg                                                             >  2:4462077/1‑93 (MQ=255)
                           aGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTg                                                             >  1:1578497/1‑93 (MQ=255)
                            ggAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTgg                                                            <  1:932100/93‑1 (MQ=255)
                            ggAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTgg                                                            >  1:5582334/1‑93 (MQ=255)
                            ggAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTgg                                                            >  1:1757976/1‑93 (MQ=255)
                             gAATGAAGGGAAATGCAAGGAGGTGTTTAAATGGGCGGTTACGCTTAAAATTTGATGCCCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGgt                                                           <  2:4528905/93‑1 (MQ=19)
                             gAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGgt                                                           <  2:5991593/93‑1 (MQ=255)
                               aTGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGgtgt                                                         >  1:3150632/1‑93 (MQ=255)
                               aTGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGgtgt                                                         >  2:2600554/1‑93 (MQ=255)
                               aTGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGgtgt                                                         >  1:4894888/1‑93 (MQ=255)
                               aTGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGgtgt                                                         >  1:4630072/1‑93 (MQ=255)
                                 gAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTaa                                                       <  2:4093603/93‑1 (MQ=255)
                                 gAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTaa                                                       <  1:5479991/93‑1 (MQ=255)
                                  aaGTGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAAt                                                      <  1:1126272/93‑1 (MQ=255)
                                  aaGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTaa                                                       >  1:3999158/1‑93 (MQ=255)
                                  aaGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAAt                                                      >  1:529764/1‑93 (MQ=255)
                                  aaGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAAt                                                      >  2:2550851/1‑93 (MQ=255)
                                    gggAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTc                                                    >  1:1061712/1‑93 (MQ=255)
                                    gggAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTc                                                    >  1:6353605/1‑93 (MQ=255)
                                    gggAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTc                                                    >  1:6445648/1‑93 (MQ=255)
                                     ggAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCa                                                   >  1:2906067/1‑93 (MQ=255)
                                      gAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCAt                                                  <  2:3097675/93‑1 (MQ=255)
                                       aaaTGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCAtg                                                 <  2:335110/93‑1 (MQ=255)
                                        aaTGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCAtgt                                                <  1:1400810/93‑1 (MQ=255)
                                          tGCAACTAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGc                                              <  2:3153773/93‑1 (MQ=255)
                                             aaCGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCa                                           >  1:1242179/1‑93 (MQ=255)
                                             aaCGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCa                                           <  1:2316805/93‑1 (MQ=255)
                                              aCGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCaa                                          >  1:5997565/1‑93 (MQ=255)
                                                gAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAAcc                                        <  1:3904415/93‑1 (MQ=255)
                                                gAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAAcc                                        >  2:5470172/1‑93 (MQ=255)
                                                gAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAAcc                                        >  2:4868728/1‑93 (MQ=255)
                                                 aGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAAcc                                        >  1:1182177/1‑93 (MQ=255)
                                                 aGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAAccc                                       >  2:1565713/1‑93 (MQ=255)
                                                  ggTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCg                                      >  1:2947174/1‑93 (MQ=255)
                                                  ggTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCg                                      >  1:3073837/1‑93 (MQ=255)
                                                   gtgtgtAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGa                                     <  2:478982/93‑1 (MQ=255)
                                                    tgtgtAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGaa                                    <  2:2995411/93‑1 (MQ=255)
                                                    tgtgtAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGaa                                    <  2:3383779/93‑1 (MQ=255)
                                                       gtAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGtt                                 <  1:4839177/93‑1 (MQ=255)
                                                        tAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTg                                >  2:1664377/1‑93 (MQ=255)
                                                        tAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTg                                <  2:240996/93‑1 (MQ=255)
                                                        tAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTg                                >  2:513689/1‑93 (MQ=255)
                                                          aaTTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGAc                              >  1:893116/1‑93 (MQ=255)
                                                          aaTTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGAc                              >  1:4441137/1‑93 (MQ=255)
                                                          aaTTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGAc                              <  1:5169642/93‑1 (MQ=255)
                                                           aTTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACt                             >  1:6231379/1‑93 (MQ=255)
                                                            ttGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACtt                            >  2:648864/1‑93 (MQ=255)
                                                            ttGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACtt                            <  2:3952412/93‑1 (MQ=255)
                                                            ttGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACtt                            >  2:5938281/1‑93 (MQ=255)
                                                            ttGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACtt                            >  1:4737661/1‑93 (MQ=255)
                                                            ttGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACtt                            >  1:5724536/1‑93 (MQ=255)
                                                             tGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTc                           <  1:2719436/93‑1 (MQ=255)
                                                                cGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCAcc                        <  2:4318151/93‑1 (MQ=255)
                                                                 ggTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCt                       <  1:1908938/93‑1 (MQ=255)
                                                                 ggTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCt                       <  1:6562833/93‑1 (MQ=255)
                                                                  gTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTa                      <  2:3224080/93‑1 (MQ=255)
                                                                  gTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTa                      >  1:5695292/1‑93 (MQ=255)
                                                                         ttACAGATTGATGACCGGC‑AAAAAATCCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCACCCCGAAGTTGACTTCACCTATCAATAc               <  2:1070140/93‑1 (MQ=255)
                                                                           aCAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACct             <  1:5873258/93‑1 (MQ=255)
                                                                           aCAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACct             >  2:870505/1‑93 (MQ=255)
                                                                            cAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACct             >  1:4332946/1‑93 (MQ=255)
                                                                             aGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACctct           <  2:151767/93‑1 (MQ=255)
                                                                              gATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTg          <  1:1963377/93‑1 (MQ=255)
                                                                              gATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTg          >  2:1219409/1‑93 (MQ=255)
                                                                              gATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTg          >  2:3534645/1‑93 (MQ=255)
                                                                               aTTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTgg         >  2:4731624/1‑93 (MQ=255)
                                                                               aTTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTgg         <  2:6585213/93‑1 (MQ=255)
                                                                                ttGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTggg        >  2:3245981/1‑93 (MQ=255)
                                                                                 tgatgaCCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGa       <  2:4280351/93‑1 (MQ=255)
                                                                                   atgaCCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGAt      >  2:6039521/1‑93 (MQ=255)
                                                                                   atgaCCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATc     <  2:581881/93‑1 (MQ=255)
                                                                                   atgaCCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGGGTAATTTATGTGCTCAACCCGGAGCTGACTTCACCTATCAATACCTCTGGGCTc     >  2:5982221/1‑93 (MQ=255)
                                                                                     gaCCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATcac   >  1:380421/1‑93 (MQ=255)
                                                                                      aCCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATcacc  >  2:6386260/1‑93 (MQ=255)
                                                                                      aCCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATcacc  <  2:6633640/93‑1 (MQ=255)
                                                                                            |                                                                                       
CGACTCTTCGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACC  >  NC_000913/2974234‑2974413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCAACCT  >  NC_000913/2974242‑2974426
                                                                                           |                                                                                             
CGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCT                                                                                            <  SRR4302547.1252033/94‑1 (MQ=60)
CGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCT                                                                                            >  SRR4302547.2816045/1‑94 (MQ=60)
 GCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTG                                                                                           >  SRR4302547.5315751/1‑94 (MQ=60)
 GCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTG                                                                                           <  SRR4302547.6775872/94‑1 (MQ=60)
   CAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCG                                                                                         <  SRR4302547.1570775/94‑1 (MQ=60)
   CAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCG                                                                                         <  SRR4302547.3171367/94‑1 (MQ=60)
    AGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCG                                                                                         >  SRR4302547.1319028/1‑94 (MQ=60)
    AGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGC                                                                                        >  SRR4302547.5798790/1‑94 (MQ=60)
    AGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGC                                                                                        <  SRR4302547.1307921/94‑1 (MQ=60)
     GCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCA                                                                                       >  SRR4302547.4492991/1‑94 (MQ=60)
     GCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCA                                                                                       >  SRR4302547.4866766/1‑94 (MQ=60)
     GCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCA                                                                                       <  SRR4302547.3549009/94‑1 (MQ=60)
      CGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAACAACCTGCGCA                                                                                       >  SRR4302547.190298/1‑94 (MQ=60)
      CGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCAT                                                                                      >  SRR4302547.2287404/1‑94 (MQ=60)
        AGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCT                                                                                    >  SRR4302547.3547595/1‑94 (MQ=60)
        AGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCT                                                                                    >  SRR4302547.376196/1‑94 (MQ=60)
        AGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCT                                                                                    <  SRR4302547.3491989/94‑1 (MQ=60)
        AGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCT                                                                                    >  SRR4302547.147000/1‑94 (MQ=60)
         GAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCT                                                                                    >  SRR4302547.366551/1‑94 (MQ=60)
         GAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTG                                                                                   >  SRR4302547.2661696/1‑94 (MQ=60)
         GAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTG                                                                                   >  SRR4302547.5826966/1‑94 (MQ=60)
         GAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTG                                                                                   >  SRR4302547.1802082/1‑94 (MQ=60)
           AAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCG                                                                                 >  SRR4302547.3559153/1‑94 (MQ=60)
             ACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGC                                                                                <  SRR4302547.3796658/94‑1 (MQ=60)
             ACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCA                                                                               <  SRR4302547.1693939/94‑1 (MQ=60)
             ACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCA                                                                               >  SRR4302547.2834371/1‑94 (MQ=60)
             ACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCA                                                                               <  SRR4302547.3366856/94‑1 (MQ=60)
                CAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGC                                                                            >  SRR4302547.4865646/1‑94 (MQ=60)
                CAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGC                                                                            >  SRR4302547.5198796/1‑94 (MQ=60)
                 AAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCT                                                                           >  SRR4302547.464571/1‑94 (MQ=60)
                 AAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCT                                                                           >  SRR4302547.1421584/1‑94 (MQ=60)
                 AAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCT                                                                           <  SRR4302547.769501/94‑1 (MQ=60)
                  AAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTG                                                                          <  SRR4302547.3067144/94‑1 (MQ=60)
                  AAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTG                                                                          >  SRR4302547.1609910/1‑94 (MQ=60)
                   AGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTG                                                                          >  SRR4302547.3155252/1‑94 (MQ=60)
                   AGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGG                                                                         >  SRR4302547.5697474/1‑94 (MQ=60)
                   AGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGG                                                                         >  SRR4302547.1792789/1‑94 (MQ=60)
                    GGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGT                                                                        <  SRR4302547.1164758/94‑1 (MQ=60)
                    GGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGT                                                                        <  SRR4302547.950120/94‑1 (MQ=60)
                    GGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGG                                                                        >  SRR4302547.4671485/1‑94 (MQ=60)
                     GAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGT                                                                        <  SRR4302547.4975649/94‑1 (MQ=60)
                      AATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGT                                                                      <  SRR4302547.6707397/94‑1 (MQ=60)
                      AATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGT                                                                      >  SRR4302547.5870997/1‑94 (MQ=60)
                      AATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGT                                                                      >  SRR4302547.3213246/1‑94 (MQ=60)
                      AATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGT                                                                      >  SRR4302547.4996266/1‑94 (MQ=60)
                      AATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGT                                                                      >  SRR4302547.4725977/1‑94 (MQ=60)
                        TGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAA                                                                    >  SRR4302547.3344062/1‑94 (MQ=60)
                         GAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAA                                                                    >  SRR4302547.4080453/1‑94 (MQ=60)
                         GAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAAT                                                                   >  SRR4302547.539329/1‑94 (MQ=60)
                         GAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAAT                                                                   <  SRR4302547.5593149/94‑1 (MQ=60)
                         GAAGGCAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAAT                                                                   >  SRR4302547.6079684/1‑94 (MQ=60)
                          AAGTGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATT                                                                  <  SRR4302547.1149001/94‑1 (MQ=60)
                           AGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTC                                                                 >  SRR4302547.6486033/1‑94 (MQ=60)
                           AGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTC                                                                 <  SRR4302547.4763914/94‑1 (MQ=60)
                           AGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTC                                                                 <  SRR4302547.5654312/94‑1 (MQ=60)
                           AGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTC                                                                 >  SRR4302547.6579953/1‑94 (MQ=60)
                           AGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTC                                                                 >  SRR4302547.1082833/1‑94 (MQ=60)
                           AGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTC                                                                 >  SRR4302547.1089310/1‑94 (MQ=60)
                            GGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTC                                                                 >  SRR4302547.1999430/1‑94 (MQ=60)
                            GGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCA                                                                >  SRR4302547.2964013/1‑94 (MQ=60)
                             GGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCAT                                                               <  SRR4302547.2510250/94‑1 (MQ=60)
                             GGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCAT                                                               >  SRR4302547.3794558/1‑94 (MQ=60)
                              GAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATG                                                              <  SRR4302547.1012917/94‑1 (MQ=60)
                              GAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATG                                                              <  SRR4302547.5024565/94‑1 (MQ=60)
                                AATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTG                                                            <  SRR4302547.1428837/94‑1 (MQ=60)
                                  TGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCT                                                          >  SRR4302547.4549171/1‑94 (MQ=60)
                                    CAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCA                                                        >  SRR4302547.1267253/1‑94 (MQ=60)
                                     AACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAA                                                       >  SRR4302547.6524191/1‑94 (MQ=60)
                                     AACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAA                                                       >  SRR4302547.6122027/1‑94 (MQ=60)
                                     AACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAA                                                       <  SRR4302547.2363771/94‑1 (MQ=60)
                                        GAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACC                                                     >  SRR4302547.1255991/1‑94 (MQ=60)
                                        GAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACC                                                     >  SRR4302547.1206056/1‑94 (MQ=60)
                                        GAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCC                                                    <  SRR4302547.3983815/94‑1 (MQ=60)
                                        GAGGCGTGGAAATTGTCGGTTCCTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCACAGGCTGGTGcagttcatgcactcacacc                                                    >  SRR4302547.399953/1‑75 (MQ=60)
                                         AGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCG                                                   >  SRR4302547.3134900/1‑94 (MQ=60)
                                         AGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCG                                                   <  SRR4302547.2103512/94‑1 (MQ=60)
                                         AGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCG                                                   >  SRR4302547.661590/1‑94 (MQ=60)
                                         AGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCG                                                   >  SRR4302547.3005882/1‑94 (MQ=60)
                                         AGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCG                                                   >  SRR4302547.3608422/1‑94 (MQ=60)
                                           GTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAA                                                 >  SRR4302547.6726584/1‑94 (MQ=60)
                                             GTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGT                                               >  SRR4302547.5767697/1‑94 (MQ=60)
                                             GTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGT                                               >  SRR4302547.1470465/1‑94 (MQ=60)
                                              TGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTT                                              >  SRR4302547.3878577/1‑94 (MQ=60)
                                               GTAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTG                                             <  SRR4302547.4939481/94‑1 (MQ=60)
                                                TAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGA                                            <  SRR4302547.6536000/94‑1 (MQ=60)
                                                TAAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGA                                            >  SRR4302547.2201309/1‑94 (MQ=60)
                                                 AAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGAC                                           >  SRR4302547.910288/1‑94 (MQ=60)
                                                 AAATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGAC                                           >  SRR4302547.4532967/1‑94 (MQ=60)
                                                  AATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACT                                          <  SRR4302547.5276084/94‑1 (MQ=60)
                                                  AATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACT                                          >  SRR4302547.6360829/1‑94 (MQ=60)
                                                   ATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACT                                          <  SRR4302547.3909552/94‑1 (MQ=60)
                                                   ATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGATTT                                         <  SRR4302547.4277674/94‑1 (MQ=60)
                                                   ATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTT                                         <  SRR4302547.5468378/94‑1 (MQ=60)
                                                   ATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTT                                         >  SRR4302547.5842790/1‑94 (MQ=60)
                                                   ATTGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTT                                         >  SRR4302547.4835851/1‑94 (MQ=60)
                                                     TGTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCA                                       <  SRR4302547.2774040/94‑1 (MQ=60)
                                                      GTCGGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCAC                                      <  SRR4302547.4702560/94‑1 (MQ=60)
                                                        CGTTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCT                                    <  SRR4302547.1502295/94‑1 (MQ=60)
                                                         GGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCT                                    >  SRR4302547.3843642/1‑94 (MQ=60)
                                                         GGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTA                                   <  SRR4302547.6699490/94‑1 (MQ=60)
                                                         GGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTA                                   >  SRR4302547.5812922/1‑94 (MQ=60)
                                                         GGTTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTA                                   <  SRR4302547.1946716/94‑1 (MQ=60)
                                                           TTACTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATC                                 >  SRR4302547.616549/1‑94 (MQ=60)
                                                              CTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATGAAT                              <  SRR4302547.5505296/94‑1 (MQ=60)
                                                              CTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAAT                              >  SRR4302547.5345532/1‑94 (MQ=60)
                                                              CTGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAAT                              <  SRR4302547.2290136/94‑1 (MQ=60)
                                                               TGTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATA                             <  SRR4302547.3385202/94‑1 (MQ=60)
                                                                GTTACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATAC                            <  SRR4302547.1369772/94‑1 (MQ=60)
                                                                   ACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCT                          >  SRR4302547.4422086/1‑94 (MQ=60)
                                                                   ACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTC                         >  SRR4302547.443138/1‑94 (MQ=60)
                                                                   ACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTC                         <  SRR4302547.5282095/94‑1 (MQ=60)
                                                                   ACAGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTC                         <  SRR4302547.5994826/94‑1 (MQ=60)
                                                                     AGATTGATGACCGGC‑AAAAAACCCTGCGCAGCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTG                       <  SRR4302547.6413700/94‑1 (MQ=60)
                                                                     AGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTG                       >  SRR4302547.4014202/1‑94 (MQ=60)
                                                                     AGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTG                       <  SRR4302547.4061083/94‑1 (MQ=60)
                                                                     AGATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTG                       >  SRR4302547.2678386/1‑94 (MQ=60)
                                                                      GATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGG                      <  SRR4302547.2002358/94‑1 (MQ=60)
                                                                       ATTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGG                     <  SRR4302547.911641/94‑1 (MQ=60)
                                                                        TTGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGA                    <  SRR4302547.2965076/94‑1 (MQ=60)
                                                                         TGATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGAT                   <  SRR4302547.4856668/94‑1 (MQ=60)
                                                                          GATGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATC                  >  SRR4302547.5244891/1‑94 (MQ=60)
                                                                            TGACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCAC                >  SRR4302547.387474/1‑94 (MQ=60)
                                                                             GACCGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACC               >  SRR4302547.5312676/1‑94 (MQ=60)
                                                                                CGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACT            >  SRR4302547.4037765/1‑94 (MQ=60)
                                                                                CGGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACT            <  SRR4302547.4958753/94‑1 (MQ=60)
                                                                                 GGC‑AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTT           <  SRR4302547.6201775/94‑1 (MQ=60)
                                                                                   gcAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTT          <  SRR4302547.2016592/92‑1 (MQ=60)
                                                                                    CAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTA         >  SRR4302547.2349153/1‑94 (MQ=60)
                                                                                    CAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTA         >  SRR4302547.2464424/1‑94 (MQ=60)
                                                                                    CAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCAGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTA         >  SRR4302547.6660747/1‑94 (MQ=60)
                                                                                     AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAG        <  SRR4302547.73712/94‑1 (MQ=60)
                                                                                     AAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAG        <  SRR4302547.5996746/94‑1 (MQ=60)
                                                                                      AAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGC       <  SRR4302547.3121917/94‑1 (MQ=60)
                                                                                      AAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGC       <  SRR4302547.2064603/94‑1 (MQ=60)
                                                                                      AAAAAACCTGCGCATCTGCGCAGGCTGGGGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCGCCGCTTTAGC       <  SRR4302547.6258937/94‑1 (MQ=60)
                                                                                       AAAAACCTGCGCATCTGCGCAGGCTGGCGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCA      >  SRR4302547.1360516/1‑94 (MQ=60)
                                                                                        AAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCAA     >  SRR4302547.6244952/1‑94 (MQ=60)
                                                                                        AAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCAA     <  SRR4302547.439767/94‑1 (MQ=60)
                                                                                        AAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCAA     >  SRR4302547.2516715/1‑94 (MQ=60)
                                                                                          AACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACGTTAGCAACC   <  SRR4302547.6611814/94‑1 (MQ=60)
                                                                                           ACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCAACCT  <  SRR4302547.522739/94‑1 (MQ=60)
                                                                                           ACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCAACCT  <  SRR4302547.564708/94‑1 (MQ=60)
                                                                                           |                                                                                             
CGCCAGCGAGAAAACGCAAAGGAATGAAGGGAAATGCAACGAGGTGTGTAAATTGTCGGTTACTGTTACAGATTGATGACCGGCAAAAAAAACCTGCGCATCTGCGCAGGCTGGTGTAATTCATGTGCTCAACCCGAAGTTGACTTCACCTATCAATACCTCTGGGATCACCACTTTAGCAACCT  >  NC_000913/2974242‑2974426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑