Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,207,904 |
A→G |
V94A (GTG→GCG) |
ygjD ← |
putative O‑sialoglycoprotein endopeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,207,904 | 0 | A | G | 86.4%
| 644.1
/ 80.9
| 244 | V94A (GTG→GCG) | ygjD | putative O‑sialoglycoprotein endopeptidase |
| Reads supporting (aligned to +/- strand): ref base A (18/15); new base G (117/93); total (136/108) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.88e-01 |
Only 100 of 256 total aligned reads displayed.
TTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTT > NC_000913/3207814‑3207996
|
ttATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCcgcg < 2:475997/93‑1 (MQ=255)
ttATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACg < 1:5665911/93‑1 (MQ=255)
tATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCgg > 1:1038126/1‑93 (MQ=255)
aTCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGt > 2:6158966/1‑93 (MQ=255)
ttCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGGACAGGGATTGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTcgc > 2:6549963/1‑93 (MQ=255)
tCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTcgcg > 1:1153772/1‑93 (MQ=255)
tCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTcgcg > 1:6167403/1‑93 (MQ=255)
cAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGcc < 1:5953858/93‑1 (MQ=255)
gCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCaa > 2:2166598/1‑93 (MQ=255)
gCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCaa > 2:5385431/1‑93 (MQ=255)
aTCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAAcc < 1:1826000/93‑1 (MQ=255)
aTCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAAcc > 1:6423725/1‑93 (MQ=255)
aTCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAAcc > 2:3582019/1‑93 (MQ=255)
aTCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAAcc > 1:3456540/1‑93 (MQ=255)
aTCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAAca > 1:1452996/1‑92 (MQ=255)
tCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCa > 1:4463514/1‑93 (MQ=255)
tCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGTCAACCa > 2:6300271/1‑93 (MQ=255)
cGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAg > 1:2047136/1‑93 (MQ=255)
cGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAg < 1:1591890/93‑1 (MQ=255)
cGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAg < 2:4279023/93‑1 (MQ=255)
cGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAg < 1:3568626/93‑1 (MQ=255)
ggCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGt < 1:3913528/93‑1 (MQ=255)
gcgcTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTa < 2:3763963/93‑1 (MQ=255)
gcTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAgc < 2:1259036/93‑1 (MQ=255)
tAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAgcgc < 1:4236496/93‑1 (MQ=255)
tAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAgcgc < 2:1646559/93‑1 (MQ=255)
tAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAgcgc > 2:3375316/1‑93 (MQ=255)
tAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAgcgc > 1:5173556/1‑93 (MQ=255)
tAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAgcgc > 1:4305969/1‑93 (MQ=255)
aaCAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAgcgcg > 1:4519858/1‑93 (MQ=255)
aCAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCTGTAgcgcgc > 2:2931108/1‑93 (MQ=255)
aCAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAgcgcgc > 2:6075052/1‑93 (MQ=255)
cAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGcc > 1:395507/1‑93 (MQ=255)
gATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCgc > 2:5507730/1‑92 (MQ=255)
gATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGa < 2:4119436/93‑1 (MQ=255)
gATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGa > 2:3665855/1‑93 (MQ=255)
aTGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGAc > 2:1802826/1‑93 (MQ=255)
gCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTa < 1:3196488/93‑1 (MQ=255)
cccTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCTCGGTCGCGCCAACCAGTAGCGCGCCGACTaa > 2:5259612/1‑93 (MQ=255)
ccTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAAt > 2:3199827/1‑93 (MQ=255)
ccTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAAt > 2:2546394/1‑93 (MQ=255)
cTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAGCGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATc < 2:5956083/93‑1 (MQ=255)
cTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATc > 1:2312402/1‑93 (MQ=255)
ttCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATcc > 2:4199492/1‑93 (MQ=255)
ttCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATcc < 2:1436440/93‑1 (MQ=255)
tCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCa > 2:3844255/1‑93 (MQ=255)
tCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCa > 1:3858838/1‑93 (MQ=255)
tCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCa > 2:5805512/1‑93 (MQ=255)
cATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAgg < 1:937819/93‑1 (MQ=255)
atatGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAggg > 2:5888046/1‑93 (MQ=255)
atGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGcc < 2:189420/93‑1 (MQ=255)
atGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGcc < 2:4984303/93‑1 (MQ=255)
atGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGcc < 2:623856/93‑1 (MQ=255)
atGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGcc < 2:680045/93‑1 (MQ=255)
tGGTGTACAGGGATCGCCGGAGCGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCt < 2:752499/93‑1 (MQ=255)
tGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCt < 1:6605377/93‑1 (MQ=255)
gtgtACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGc < 1:691031/93‑1 (MQ=255)
gtgtACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGc < 1:2499292/93‑1 (MQ=255)
gtgtACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGc < 2:4973801/93‑1 (MQ=255)
tgtACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCg < 2:2523163/93‑1 (MQ=255)
tACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCACCGCGGCCGCGCCAACCAGTAGCGCGCCGACTAATGCAGGGCCTGCGGt > 1:1900663/1‑93 (MQ=255)
aCAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGta > 1:2104344/1‑93 (MQ=255)
cAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGtat > 1:309649/1‑93 (MQ=255)
aGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGtata < 2:911299/93‑1 (MQ=255)
ggATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAgg > 1:1644224/1‑93 (MQ=255)
gATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGc < 2:2143611/93‑1 (MQ=255)
aTCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGcc > 1:271302/1‑93 (MQ=255)
cGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCcac > 2:119805/1‑93 (MQ=255)
gCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCcaca > 2:5431340/1‑93 (MQ=255)
cGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGc > 1:880141/1‑93 (MQ=255)
ggAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGGCGCGCCAACCAGTAGCGCGCCGACTAATCCAGAGCCTGCGGTATAGGCCACAGCa > 1:3360597/1‑93 (MQ=255)
gAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCAt > 2:2854810/1‑93 (MQ=255)
gAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCAt > 1:3967461/1‑93 (MQ=255)
gTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAAt < 1:3680724/93‑1 (MQ=255)
gTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAAt > 1:2854805/1‑93 (MQ=255)
tCCCAGGCAAACGCCAGGGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATg < 1:1005520/93‑1 (MQ=255)
tCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATg > 2:6047928/1‑93 (MQ=255)
tCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATg < 1:4834453/93‑1 (MQ=255)
cccAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGt > 1:4974865/1‑93 (MQ=255)
ccAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTc < 1:5278353/93‑1 (MQ=255)
aGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCtt > 2:1547573/1‑93 (MQ=255)
ggCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCttt > 2:568157/1‑93 (MQ=255)
ggCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCttt < 2:601042/93‑1 (MQ=255)
ggCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCttt < 2:4883211/93‑1 (MQ=255)
cAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTg < 1:5517498/93‑1 (MQ=255)
aaaCGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGc > 1:5229043/1‑93 (MQ=255)
aaCGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGcc > 1:6280219/1‑93 (MQ=255)
gCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGtt > 2:1180750/1‑93 (MQ=255)
ccAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTa > 2:3008697/1‑93 (MQ=255)
ccAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTa < 2:5188396/93‑1 (MQ=255)
agagAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTaaa > 1:4063937/1‑93 (MQ=255)
gagaACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAAc < 2:4447639/93‑1 (MQ=255)
agaACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAAcc < 2:5656096/93‑1 (MQ=255)
aCGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGa > 1:1290536/1‑93 (MQ=255)
aCGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGa > 2:3072756/1‑93 (MQ=255)
gCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACt < 2:2044135/93‑1 (MQ=255)
gCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACt > 1:5867336/1‑93 (MQ=255)
cccGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTcc > 2:825860/1‑93 (MQ=255)
ccACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCt < 2:2357885/93‑1 (MQ=255)
aCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCttt > 1:1419377/1‑93 (MQ=255)
|
TTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTT > NC_000913/3207814‑3207996
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTA > NC_000913/3207811‑3207997
|
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCG > SRR4302547.1902633/1‑94 (MQ=60)
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCG < SRR4302547.3074176/94‑1 (MQ=60)
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCG > SRR4302547.4732260/1‑94 (MQ=60)
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCG > SRR4302547.5013963/1‑94 (MQ=60)
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCG < SRR4302547.3391970/94‑1 (MQ=60)
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCG > SRR4302547.1435943/1‑94 (MQ=60)
CGGTTATCTTCCAGAATGGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCG < SRR4302547.3608421/94‑1 (MQ=60)
GGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGC > SRR4302547.5242152/1‑94 (MQ=60)
GGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGC < SRR4302547.5180112/94‑1 (MQ=60)
GTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCG < SRR4302547.4574567/94‑1 (MQ=60)
GTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCG < SRR4302547.2855718/94‑1 (MQ=60)
TTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGG > SRR4302547.1058581/1‑94 (MQ=60)
TTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGG < SRR4302547.5782901/94‑1 (MQ=60)
ATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTC < SRR4302547.1366187/94‑1 (MQ=60)
ATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTC < SRR4302547.2849401/94‑1 (MQ=60)
CTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCATGCAAACGCCAGAGAACGCCCCACGGTCGC > SRR4302547.4557476/1‑94 (MQ=60)
TTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCG > SRR4302547.6295422/1‑94 (MQ=60)
ATCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCG > SRR4302547.1177122/1‑94 (MQ=60)
CCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCC > SRR4302547.1100222/1‑94 (MQ=60)
CAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCA < SRR4302547.6077330/94‑1 (MQ=60)
CAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCA > SRR4302547.1460646/1‑94 (MQ=60)
AGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCACGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAA > SRR4302547.4216366/1‑94 (MQ=60)
GCATCGGCTCTAACGGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAAC < SRR4302547.4754911/94‑1 (MQ=60)
GCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAAC > SRR4302547.5750544/1‑94 (MQ=60)
CATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACC > SRR4302547.5076689/1‑94 (MQ=60)
CATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACC > SRR4302547.3527008/1‑94 (MQ=60)
CATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACC > SRR4302547.6557643/1‑94 (MQ=60)
CATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACA > SRR4302547.1482045/1‑94 (MQ=60)
ATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCA < SRR4302547.1862094/94‑1 (MQ=60)
ATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCA > SRR4302547.4555751/1‑94 (MQ=60)
ATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCA > SRR4302547.4503969/1‑94 (MQ=60)
TCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAG > SRR4302547.2087969/1‑94 (MQ=60)
CGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGT > SRR4302547.6747649/1‑94 (MQ=60)
CGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGT < SRR4302547.2820588/94‑1 (MQ=60)
CGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGT > SRR4302547.2072790/1‑94 (MQ=60)
CGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGT < SRR4302547.1623503/94‑1 (MQ=60)
CGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGT < SRR4302547.3641427/94‑1 (MQ=60)
GGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTA < SRR4302547.3993099/94‑1 (MQ=60)
GGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGCCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCCCCAACCAGTA > SRR4302547.4050116/1‑94 (MQ=60)
GCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAG > SRR4302547.1232963/1‑94 (MQ=60)
GCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAG < SRR4302547.3742761/94‑1 (MQ=60)
GCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAG < SRR4302547.2485618/94‑1 (MQ=60)
GCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAG < SRR4302547.1900669/94‑1 (MQ=60)
AGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAAAGCCCCGTGGTCGCGACAACCAGTAGC > SRR4302547.909473/1‑94 (MQ=60)
GCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCG < SRR4302547.4387369/94‑1 (MQ=60)
CTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGC > SRR4302547.5280059/1‑94 (MQ=60)
CTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGC > SRR4302547.4394543/1‑94 (MQ=60)
TAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCG > SRR4302547.4613239/1‑94 (MQ=60)
TAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCG < SRR4302547.4323108/94‑1 (MQ=60)
TAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCG > SRR4302547.6184156/1‑94 (MQ=60)
ACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCC > SRR4302547.402855/1‑94 (MQ=60)
ACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCC < SRR4302547.3999278/94‑1 (MQ=60)
CAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCG < SRR4302547.4265528/94‑1 (MQ=60)
CAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCG > SRR4302547.1367020/1‑94 (MQ=60)
TGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTA < SRR4302547.5496911/94‑1 (MQ=60)
GCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAA < SRR4302547.3260199/94‑1 (MQ=60)
CCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATC > SRR4302547.3017318/1‑94 (MQ=60)
CCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATC > SRR4302547.2359286/1‑94 (MQ=60)
CTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCC < SRR4302547.4475175/94‑1 (MQ=60)
CTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCC > SRR4302547.1808127/1‑94 (MQ=60)
TTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCA > SRR4302547.3937367/1‑94 (MQ=60)
TTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCA > SRR4302547.5306948/1‑94 (MQ=60)
CCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGG < SRR4302547.1642631/94‑1 (MQ=60)
CCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGG < SRR4302547.4347712/94‑1 (MQ=60)
catagaaTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCTCGCCAACCAGTAGCGCGCCGACTAATCCAGGG < SRR4302547.3301694/87‑1 (MQ=60)
CATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGG > SRR4302547.1914186/1‑94 (MQ=60)
CATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGG > SRR4302547.1536911/1‑94 (MQ=60)
CATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGG < SRR4302547.955978/94‑1 (MQ=60)
CATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGG > SRR4302547.477780/1‑94 (MQ=60)
ATATGGTGTAGAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGC < SRR4302547.2124634/94‑1 (MQ=60)
TATGGTGTACAGGGATCCCCGGAACGTCCCAGGCAAACGCCAGAGAACGACCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCC > SRR4302547.650690/1‑94 (MQ=60)
TGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTG < SRR4302547.6742876/94‑1 (MQ=60)
TGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTG < SRR4302547.1159343/94‑1 (MQ=60)
TGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTG < SRR4302547.4046467/94‑1 (MQ=60)
GTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCTGACTAATCCAGGGCCTGCG > SRR4302547.1690530/1‑94 (MQ=60)
GTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCG < SRR4302547.3888589/94‑1 (MQ=60)
GTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCG < SRR4302547.703793/94‑1 (MQ=60)
GTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCG < SRR4302547.2549781/94‑1 (MQ=60)
TGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGG > SRR4302547.6494481/1‑94 (MQ=60)
TGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGG > SRR4302547.2143276/1‑94 (MQ=60)
GTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCACCGCGGCCGCGCCAACCAGTAGCGCGCCGACTAATGCAGGGCCTGCGGT > SRR4302547.1938269/1‑94 (MQ=60)
TACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTA > SRR4302547.2146280/1‑94 (MQ=60)
ACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTAT > SRR4302547.3975833/1‑94 (MQ=60)
ACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTAT > SRR4302547.3341591/1‑94 (MQ=60)
ACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTAT > SRR4302547.315416/1‑94 (MQ=60)
CAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATA > SRR4302547.6296065/1‑94 (MQ=60)
GGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGG < SRR4302547.5217015/94‑1 (MQ=60)
GGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGG > SRR4302547.1676711/1‑94 (MQ=60)
GGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGC > SRR4302547.398961/1‑94 (MQ=60)
GATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCC < SRR4302547.1035452/94‑1 (MQ=60)
GATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCC > SRR4302547.819982/1‑94 (MQ=60)
GATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCC < SRR4302547.3856105/94‑1 (MQ=60)
GATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCC > SRR4302547.276378/1‑94 (MQ=60)
ATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCA < SRR4302547.5805664/94‑1 (MQ=60)
CCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGC > SRR4302547.897054/1‑94 (MQ=60)
TGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGGCGCGCCAACCAGTAGCGCGCCGACTAATCCAGAGCCTGCGGTATAGGCCACAGCA > SRR4302547.3428808/1‑94 (MQ=60)
CGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCA > SRR4302547.5306357/1‑94 (MQ=60)
CGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCA > SRR4302547.3368027/1‑94 (MQ=60)
GGAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCAT > SRR4302547.3204965/1‑94 (MQ=60)
GGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCAT > SRR4302547.4048163/1‑94 (MQ=60)
GAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATC < SRR4302547.161880/94‑1 (MQ=60)
GAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATC > SRR4302547.214741/1‑94 (MQ=60)
GAACGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATC > SRR4302547.403164/1‑94 (MQ=60)
CGTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAAT > SRR4302547.2911846/1‑94 (MQ=60)
GTGCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATG > SRR4302547.5383226/1‑94 (MQ=60)
GTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATG > SRR4302547.5232535/1‑94 (MQ=60)
GTCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATG < SRR4302547.3755869/94‑1 (MQ=60)
TCCCAGGCAAACGCCAGGGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGT < SRR4302547.1025140/94‑1 (MQ=60)
TCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGT > SRR4302547.5077773/1‑94 (MQ=60)
TCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGT > SRR4302547.6226037/1‑94 (MQ=60)
TCCCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGT < SRR4302547.4934668/94‑1 (MQ=60)
cacagtgatagggcgGAGAACGCTCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTC < SRR4302547.3591641/79‑1 (MQ=60)
CCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTC > SRR4302547.3631291/1‑94 (MQ=60)
CCAGGCAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCT < SRR4302547.5387221/94‑1 (MQ=60)
AGGAAAACGCCAGAGAACGCCCCACGGGAGCGCCAACCAGTAGCGCGCCGACTAATCCACGGCCTGCGGTATAGGCCACAGAATCACTGTCTTT > SRR4302547.5577780/1‑94 (MQ=60)
CAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGC < SRR4302547.5631397/94‑1 (MQ=60)
CAAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGC > SRR4302547.5336680/1‑94 (MQ=60)
AAACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCC > SRR4302547.3561833/1‑94 (MQ=60)
AAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCC > SRR4302547.6410699/1‑94 (MQ=60)
AACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCG > SRR4302547.6579468/1‑94 (MQ=60)
AACGCCAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCG < SRR4302547.3251150/94‑1 (MQ=60)
AACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCG < SRR4302547.714759/94‑1 (MQ=60)
GCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTA > SRR4302547.5855730/1‑94 (MQ=60)
CAGAGAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAA > SRR4302547.4146476/1‑94 (MQ=60)
CAGAGAACGCCCCGCGGTCGCGCCAACCAGGAGCGCGCCGACTAATCCAGGGCCTGCGGCATAGGCCACAGCATCAATGTCTTTTGCCGTTAAA > SRR4302547.1856791/1‑94 (MQ=60)
GAACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAG < SRR4302547.4733799/94‑1 (MQ=60)
AACGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGA > SRR4302547.1316515/1‑94 (MQ=60)
CGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACT > SRR4302547.5988776/1‑94 (MQ=60)
CGCCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACT < SRR4302547.3486211/94‑1 (MQ=60)
CGCCCCACGCTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACT < SRR4302547.6060461/94‑1 (MQ=60)
CCCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCACACTCC > SRR4302547.6573213/1‑94 (MQ=60)
CCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCT > SRR4302547.1246533/1‑94 (MQ=60)
CCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCT < SRR4302547.553040/94‑1 (MQ=60)
CCCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCT > SRR4302547.1507346/1‑94 (MQ=60)
CCGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTT > SRR4302547.3538398/1‑94 (MQ=60)
CGCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTT < SRR4302547.338469/94‑1 (MQ=60)
CACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTT > SRR4302547.1447794/1‑94 (MQ=60)
GCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTA < SRR4302547.1362576/94‑1 (MQ=60)
GCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTA < SRR4302547.6441687/94‑1 (MQ=60)
CCGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTA < SRR4302547.817714/94‑1 (MQ=60)
ACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTA < SRR4302547.2735639/94‑1 (MQ=60)
|
GGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTA > NC_000913/3207811‑3207997
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
