Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,298,112	T→C	G96G (GGA→GGG)	yhbS ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,298,112	0	T	C	99.6%	941.8 / NA	263	G96G (GGA→GGG)	yhbS	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (143/119); minor base G (1/0); total (144/119)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 274 total aligned reads displayed.

CGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGTCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTC  >  NC_000913/3298022‑3298201

cgccgcCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGccc                                                                                         <  1:3682200/93‑1 (MQ=255)

 gccgccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCt                                                                                        <  1:1203931/93‑1 (MQ=255)

 gccgccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCt                                                                                        <  1:6382757/93‑1 (MQ=255)

   cgccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTc                                                                                      >  2:816943/1‑93 (MQ=255)

   cgccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTc                                                                                      >  2:2165368/1‑93 (MQ=255)

   cgccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTc                                                                                      <  2:2248686/93‑1 (MQ=255)

   cgccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTc                                                                                      <  2:2335828/93‑1 (MQ=255)

    gccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCa                                                                                     >  1:3880607/1‑93 (MQ=255)

    gccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCa                                                                                     <  2:2824603/93‑1 (MQ=255)

     ccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCAt                                                                                    >  1:6269791/1‑93 (MQ=255)

     ccAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCAt                                                                                    <  1:1816438/93‑1 (MQ=255)

      cAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATa                                                                                   <  1:1068198/93‑1 (MQ=255)

      cAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATa                                                                                   >  2:3886254/1‑93 (MQ=255)

       aGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAg                                                                                  >  1:555316/1‑93 (MQ=255)

        gTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGa                                                                                 >  2:1858591/1‑93 (MQ=255)

         ttCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGAc                                                                                >  2:3500458/1‑93 (MQ=255)

          tCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGAcc                                                                               <  1:4709777/93‑1 (MQ=255)

          tCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGAcc                                                                               <  1:5812571/93‑1 (MQ=255)

           cAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCa                                                                              >  2:3747649/1‑93 (MQ=255)

            aaaGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAg                                                                             >  1:5948950/1‑93 (MQ=255)

              aGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGtt                                                                           <  2:3252968/93‑1 (MQ=255)

               gCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTg                                                                          >  1:4866551/1‑93 (MQ=255)

                ccGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTgg                                                                         >  1:6653399/1‑93 (MQ=255)

                ccGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTgg                                                                         <  2:3181099/93‑1 (MQ=255)

                 cGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGc                                                                        >  2:4928465/1‑93 (MQ=255)

                  gAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCg                                                                       >  1:1017000/1‑93 (MQ=255)

                   aaaCGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGt                                                                      <  2:43167/93‑1 (MQ=255)

                    aaCGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTg                                                                     >  2:755032/1‑93 (MQ=255)

                    aaCGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTg                                                                     <  1:64827/93‑1 (MQ=255)

                     aCGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGc                                                                    >  2:3641593/1‑93 (MQ=255)

                      cGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGcc                                                                   <  2:1474345/93‑1 (MQ=255)

                        aCTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAg                                                                 >  1:423129/1‑93 (MQ=255)

                         cTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGc                                                                <  1:3042292/93‑1 (MQ=255)

                          tGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGcc                                                               <  2:3579901/93‑1 (MQ=255)

                          tGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGcc                                                               <  2:5677971/93‑1 (MQ=255)

                           gTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGccc                                                              <  1:6088754/93‑1 (MQ=255)

                            tACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGcccc                                                             <  1:2681193/93‑1 (MQ=255)

                               aGCGCCGGATCTCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGt                                                          <  1:1559790/93‑1 (MQ=255)

                               aGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGt                                                          <  1:2190338/93‑1 (MQ=255)

                                gcgcCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTc                                                         >  1:4021339/1‑93 (MQ=255)

                                 cgcCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGCGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTcc                                                        <  2:6577467/93‑1 (MQ=255)

                                   ccGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCAc                                                      >  1:5214159/1‑93 (MQ=255)

                                    cGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACg                                                     >  1:1044258/1‑93 (MQ=255)

                                    cGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACg                                                     <  2:4033754/93‑1 (MQ=255)

                                      gATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGt                                                   >  1:1342054/1‑93 (MQ=255)

                                      gATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGt                                                   >  1:4982204/1‑93 (MQ=255)

                                       aTCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTa                                                  <  1:5452113/93‑1 (MQ=255)

                                        tCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTAt                                                 <  1:2371116/93‑1 (MQ=255)

                                          gCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTAttt                                               <  1:3444359/93‑1 (MQ=255)

                                          gCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTAttt                                               >  2:5547647/1‑93 (MQ=255)

                                           cccAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTAtttt                                              <  1:4737168/93‑1 (MQ=255)

                                             cAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTtc                                            <  2:2719749/93‑1 (MQ=255)

                                             cAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTtc                                            >  2:6199000/1‑93 (MQ=255)

                                             cAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTtc                                            <  2:2040504/93‑1 (MQ=255)

                                               gCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTtcat                                          <  2:4133887/93‑1 (MQ=255)

                                                 gTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGTCGTGCCAGCCCCTGTCCACGGTATTTTtcatca                                        >  1:5093058/1‑93 (MQ=255)

                                                 gTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTtcatca                                        <  2:587069/93‑1 (MQ=255)

                                                  tCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCaa                                       >  1:4501783/1‑93 (MQ=255)

                                                   caccacTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAAc                                      >  1:85134/1‑93 (MQ=255)

                                                    accacTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAAcc                                     <  1:233215/93‑1 (MQ=255)

                                                    accacTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAAcc                                     >  2:2951966/1‑93 (MQ=255)

                                                      cacTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGc                                   >  2:1029476/1‑93 (MQ=255)

                                                      cacTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGc                                   >  1:3947584/1‑93 (MQ=255)

                                                        cTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCa                                 >  2:1249818/1‑93 (MQ=255)

                                                         tGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCaa                                <  1:3839513/93‑1 (MQ=255)

                                                            ggCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACgg                             <  2:5376268/93‑1 (MQ=255)

                                                            ggCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACgg                             <  2:4197969/93‑1 (MQ=255)

                                                            ggCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGATGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACgg                             >  1:3512706/1‑93 (MQ=255)

                                                             gCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGt                            >  2:2434997/1‑93 (MQ=255)

                                                               aTAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGAGc                          >  2:6284052/1‑93 (MQ=255)

                                                                tAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGcc                         >  1:2015906/1‑93 (MQ=255)

                                                                tAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGcc                         >  1:324404/1‑93 (MQ=255)

                                                                 aGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCa                        >  2:4541822/1‑93 (MQ=255)

                                                                 aGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCa                        >  2:3000717/1‑93 (MQ=255)

                                                                  ggcGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATCTTTCATCAACCGCCAACGGTGCCAt                       >  2:6423027/3‑93 (MQ=255)

                                                                  gCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCAt                       >  1:1190623/1‑93 (MQ=255)

                                                                  gCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCAt                       <  2:337660/93‑1 (MQ=255)

                                                                  gCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCAt                       <  2:1167163/93‑1 (MQ=255)

                                                                    cGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGc                     <  2:5707052/93‑1 (MQ=255)

                                                                     gAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGcc                    <  1:3474316/93‑1 (MQ=255)

                                                                     gAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGcc                    <  2:1720656/93‑1 (MQ=255)

                                                                       aCTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGa                  >  2:1292728/1‑93 (MQ=255)

                                                                        cTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGAc                 <  2:369288/93‑1 (MQ=255)

                                                                          cATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGAccc               >  2:6531737/1‑93 (MQ=255)

                                                                           aTTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCa              >  1:616160/1‑93 (MQ=255)

                                                                            ttAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCAt             >  2:5126829/1‑93 (MQ=255)

                                                                            ttAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCAt             <  1:1389079/93‑1 (MQ=255)

                                                                             tAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCAtt            <  1:4306858/93‑1 (MQ=255)

                                                                             tAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCAtt            >  2:2661090/1‑93 (MQ=255)

                                                                             tAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCAtt            <  2:3049713/93‑1 (MQ=255)

                                                                               aGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTga          >  1:1600686/1‑92 (MQ=255)

                                                                               aGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGc          >  2:1997002/1‑93 (MQ=255)

                                                                               aGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGc          <  1:2937721/93‑1 (MQ=255)

                                                                                gCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCa         >  2:2622155/1‑93 (MQ=255)

                                                                                  gAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAgg       >  1:4241433/1‑93 (MQ=255)

                                                                                      cGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCtt   <  2:2486689/93‑1 (MQ=255)

                                                                                      cGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCtt   <  2:38231/93‑1 (MQ=255)

                                                                                      cGAGCCCTTCATAGACCAGTGGGCGTGCCGGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGTCCCATTGCAGGTCtg   <  1:5279297/93‑2 (MQ=255)

                                                                                       gAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTc  >  2:4714867/1‑93 (MQ=255)

                                                                                       gAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTc  >  2:1786251/1‑93 (MQ=255)

CGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGTCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTC  >  NC_000913/3298022‑3298201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGCGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGTCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCGCCC  >  NC_000913/3298019‑3298205

ATGCGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGC                                                                                               <  SRR4302547.4067298/94‑1 (MQ=60)

ATGCGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGC                                                                                               >  SRR4302547.6171928/1‑94 (MQ=60)

ATCCGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCCCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGC                                                                                               <  SRR4302547.6698003/94‑1 (MQ=60)

  GCTCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCC                                                                                             <  SRR4302547.1715255/94‑1 (MQ=60)

  GCGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCC                                                                                             >  SRR4302547.832919/1‑94 (MQ=60)

   CGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCT                                                                                            >  SRR4302547.2652738/1‑94 (MQ=60)

   CGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCT                                                                                            <  SRR4302547.2410254/94‑1 (MQ=60)

   CGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCT                                                                                            <  SRR4302547.3757369/94‑1 (MQ=60)

   CGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCT                                                                                            <  SRR4302547.1303781/94‑1 (MQ=60)

    GCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTT                                                                                           <  SRR4302547.1228231/94‑1 (MQ=60)

    GCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTT                                                                                           <  SRR4302547.6515954/94‑1 (MQ=60)

     CCTCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTC                                                                                          >  SRR4302547.1098643/1‑94 (MQ=60)

     CCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTC                                                                                          <  SRR4302547.5387372/94‑1 (MQ=60)

      CGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCA                                                                                         >  SRR4302547.3959560/1‑94 (MQ=60)

      CGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCA                                                                                         >  SRR4302547.6080701/1‑94 (MQ=60)

      CGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCA                                                                                         >  SRR4302547.4256405/1‑94 (MQ=60)

       GCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCAT                                                                                        >  SRR4302547.6400032/1‑94 (MQ=60)

        CCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATA                                                                                       <  SRR4302547.1852336/94‑1 (MQ=60)

         CAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAG                                                                                      >  SRR4302547.565316/1‑94 (MQ=60)

         CAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAG                                                                                      <  SRR4302547.1089466/94‑1 (MQ=60)

           GTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGAC                                                                                    >  SRR4302547.5845867/1‑94 (MQ=60)

            TTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACC                                                                                   <  SRR4302547.1455088/94‑1 (MQ=60)

            TTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACC                                                                                   <  SRR4302547.244751/94‑1 (MQ=60)

             TCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCA                                                                                  <  SRR4302547.3973293/94‑1 (MQ=60)

             TCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCA                                                                                  <  SRR4302547.5932836/94‑1 (MQ=60)

             TCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCA                                                                                  <  SRR4302547.4807298/94‑1 (MQ=60)

              CAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAG                                                                                 >  SRR4302547.6072312/1‑94 (MQ=60)

              CAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAG                                                                                 >  SRR4302547.5162728/1‑94 (MQ=60)

               AAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGT                                                                                >  SRR4302547.4384895/1‑94 (MQ=60)

               AAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGT                                                                                >  SRR4302547.4394061/1‑94 (MQ=60)

                AAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTT                                                                               <  SRR4302547.4810559/94‑1 (MQ=60)

                 AGGCGAAACGACTGTACAGCGACGGACCGCCCAGCGTCGCCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTG                                                                              <  SRR4302547.465747/94‑1 (MQ=60)

                 AGCCGAAACGACTGTACAGCGCCTGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTG                                                                              <  SRR4302547.1068840/94‑1 (MQ=60)

                 AGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTG                                                                              <  SRR4302547.4746354/94‑1 (MQ=60)

                 AGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTG                                                                              <  SRR4302547.1888963/94‑1 (MQ=60)

                 AGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTG                                                                              >  SRR4302547.4967403/1‑94 (MQ=60)

                  GCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGG                                                                             >  SRR4302547.4252210/1‑94 (MQ=60)

                  GCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGG                                                                             >  SRR4302547.6792171/1‑94 (MQ=60)

                    CGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCG                                                                           >  SRR4302547.1036916/1‑94 (MQ=60)

                      AAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTG                                                                         <  SRR4302547.1535877/94‑1 (MQ=60)

                       AACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGC                                                                        <  SRR4302547.66045/94‑1 (MQ=60)

                       AACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGC                                                                        >  SRR4302547.3529009/1‑94 (MQ=60)

                          GACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAG                                                                     >  SRR4302547.430973/1‑94 (MQ=60)

                           ACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGAGCAGTTGGCGTGCCAGC                                                                    >  SRR4302547.6586758/1‑94 (MQ=60)

                            CTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCC                                                                   <  SRR4302547.3102841/94‑1 (MQ=60)

                            CTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCC                                                                   <  SRR4302547.3776811/94‑1 (MQ=60)

                              GTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCC                                                                 <  SRR4302547.5367001/94‑1 (MQ=60)

                              GTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCC                                                                 <  SRR4302547.6215056/94‑1 (MQ=60)

                              GTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCC                                                                 >  SRR4302547.1046530/1‑94 (MQ=60)

                               TACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCT                                                                <  SRR4302547.2735031/94‑1 (MQ=60)

                                ACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTG                                                               >  SRR4302547.2058204/1‑94 (MQ=60)

                                 CAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGT                                                              <  SRR4302547.1369901/94‑1 (MQ=60)

                                 CAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGT                                                              >  SRR4302547.5270435/1‑94 (MQ=60)

                                  AGCGCCGGATCTCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTC                                                             <  SRR4302547.1590865/94‑1 (MQ=60)

                                  AGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTC                                                             >  SRR4302547.4103042/1‑94 (MQ=60)

                                  AGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTC                                                             <  SRR4302547.2234287/94‑1 (MQ=60)

                                     GCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCAC                                                          >  SRR4302547.5321485/1‑94 (MQ=60)

                                      CCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACG                                                         >  SRR4302547.1064874/1‑94 (MQ=60)

                                       CGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGG                                                        <  SRR4302547.648851/94‑1 (MQ=60)

                                        GGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGT                                                       >  SRR4302547.6729747/1‑94 (MQ=60)

                                        GGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGT                                                       >  SRR4302547.5085241/1‑94 (MQ=60)

                                        GGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGT                                                       >  SRR4302547.1369011/1‑94 (MQ=60)

                                         GATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTA                                                      <  SRR4302547.5046068/94‑1 (MQ=60)

                                          ATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTAT                                                     <  SRR4302547.5564780/94‑1 (MQ=60)

                                          ATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTAT                                                     >  SRR4302547.2882596/1‑94 (MQ=60)

                                           TCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATT                                                    >  SRR4302547.5452984/1‑94 (MQ=60)

                                           TCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATT                                                    >  SRR4302547.5939380/1‑94 (MQ=60)

                                           TCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATT                                                    <  SRR4302547.491764/94‑1 (MQ=60)

                                           TCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATA                                                    <  SRR4302547.2419174/94‑1 (MQ=60)

                                             GCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTT                                                  <  SRR4302547.3514579/94‑1 (MQ=60)

                                              CCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTT                                                 <  SRR4302547.4835347/94‑1 (MQ=60)

                                                 AGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCAT                                              <  SRR4302547.2229952/94‑1 (MQ=60)

                                                 AGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCAT                                              >  SRR4302547.3403568/1‑94 (MQ=60)

                                                 AGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCAT                                              <  SRR4302547.431310/94‑1 (MQ=60)

                                                  GCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATC                                             <  SRR4302547.1947270/94‑1 (MQ=60)

                                                   CGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGTCGTGCCAGCCCCTGTCCACGGTATTTTTCATCA                                            >  SRR4302547.5198096/1‑94 (MQ=60)

                                                   CGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCA                                            >  SRR4302547.1089289/1‑94 (MQ=60)

                                                    GTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAA                                           >  SRR4302547.4594759/1‑94 (MQ=60)

                                                     TCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAAC                                          >  SRR4302547.86709/1‑94 (MQ=60)

                                                     TCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAAC                                          >  SRR4302547.3675355/1‑94 (MQ=60)

                                                       ACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCG                                        <  SRR4302547.237598/94‑1 (MQ=60)

                                                       ACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCG                                        <  SRR4302547.1307475/94‑1 (MQ=60)

                                                       ACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCG                                        >  SRR4302547.6672631/1‑94 (MQ=60)

                                                        CCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGC                                       >  SRR4302547.4027878/1‑94 (MQ=60)

                                                        CCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGC                                       <  SRR4302547.3236484/94‑1 (MQ=60)

                                                          ACTGCGGCATAGCCGAACTCATTGCGCGAATCGAGCCCTGCATAGACCGGTTGGCGTGCCAGCCCCTGTCGACAGTATTTTTCAACAACCGCCA                                     <  SRR4302547.6616660/94‑1 (MQ=60)

                                                          ACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGGCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCA                                     <  SRR4302547.1170964/94‑1 (MQ=60)

                                                          ACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCA                                     >  SRR4302547.599980/1‑94 (MQ=60)

                                                          ACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCA                                     <  SRR4302547.1616216/94‑1 (MQ=60)

                                                            TGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAAC                                   <  SRR4302547.3917715/94‑1 (MQ=60)

                                                            TGCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAAC                                   >  SRR4302547.3556294/1‑94 (MQ=60)

                                                             GCGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACG                                  <  SRR4302547.4405591/94‑1 (MQ=60)

                                                              CGGCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGATGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGG                                 >  SRR4302547.3584422/1‑94 (MQ=60)

                                                                GCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTG                               >  SRR4302547.121596/1‑94 (MQ=60)

                                                                GCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTG                               >  SRR4302547.1842607/1‑94 (MQ=60)

                                                                GCATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTG                               >  SRR4302547.3934613/1‑94 (MQ=60)

                                                                GCATAGCCGAACTCATTAAACGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTG                               <  SRR4302547.4066402/94‑1 (MQ=60)

                                                                  ATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCC                             >  SRR4302547.330441/1‑94 (MQ=60)

                                                                  ATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCC                             >  SRR4302547.2056014/1‑94 (MQ=60)

                                                                  ATAGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCC                             >  SRR4302547.238409/1‑94 (MQ=60)

                                                                    AGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCAT                           <  SRR4302547.38378/94‑1 (MQ=60)

                                                                    AGCCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCAT                           >  SRR4302547.1214652/1‑94 (MQ=60)

                                                                      CCGAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGC                         <  SRR4302547.6263863/94‑1 (MQ=60)

                                                                        GAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCG                       >  SRR4302547.1370845/1‑94 (MQ=60)

                                                                        GAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCG                       >  SRR4302547.4591426/1‑94 (MQ=60)

                                                                        GAACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCG                       <  SRR4302547.3545178/94‑1 (MQ=60)

                                                                         AACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGA                      >  SRR4302547.6365548/1‑94 (MQ=60)

                                                                         AACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGA                      <  SRR4302547.2954724/94‑1 (MQ=60)

                                                                          ACTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGAC                     >  SRR4302547.3090392/1‑94 (MQ=60)

                                                                           CTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACC                    <  SRR4302547.606013/94‑1 (MQ=60)

                                                                           CTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACC                    <  SRR4302547.343047/94‑1 (MQ=60)

                                                                           CTCATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGAGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACC                    <  SRR4302547.1635133/94‑1 (MQ=60)

                                                                             CATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCA                  >  SRR4302547.627573/1‑94 (MQ=60)

                                                                              ATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCAT                 >  SRR4302547.2359497/1‑94 (MQ=60)

                                                                              ATTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCAT                 >  SRR4302547.5553826/1‑94 (MQ=60)

                                                                               TTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATT                >  SRR4302547.352920/1‑94 (MQ=60)

                                                                               TTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATT                <  SRR4302547.1416882/94‑1 (MQ=60)

                                                                               TTAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATT                >  SRR4302547.5120616/1‑94 (MQ=60)

                                                                                TAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTG               <  SRR4302547.4395453/94‑1 (MQ=60)

                                                                                TAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGCGCCATGCCGACCCATTG               >  SRR4302547.5653665/1‑94 (MQ=60)

                                                                                TAAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGAATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTG               >  SRR4302547.556348/1‑94 (MQ=60)

                                                                                 AAGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGA              >  SRR4302547.1632439/1‑94 (MQ=60)

                                                                                  AGCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCA             <  SRR4302547.2996259/94‑1 (MQ=60)

                                                                                   GCGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAG            >  SRR4302547.3209184/1‑94 (MQ=60)

                                                                                    CGAATCGAGCTCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGG           <  SRR4302547.6407769/94‑1 (MQ=60)

                                                                                    CGAATCGAGCCTTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGG           <  SRR4302547.1429736/94‑1 (MQ=60)

                                                                                    CGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGG           >  SRR4302547.4996425/1‑94 (MQ=60)

                                                                                    CGAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGG           >  SRR4302547.4328164/1‑94 (MQ=60)

                                                                                     GAATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGT          >  SRR4302547.4092034/1‑94 (MQ=60)

                                                                                      AATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGgt         >  SRR4302547.6288440/1‑92 (MQ=60)

                                                                                      AATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTC         >  SRR4302547.3651893/1‑94 (MQ=60)

                                                                                      AATCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTC         <  SRR4302547.4839764/94‑1 (MQ=60)

                                                                                        TCGAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTT       <  SRR4302547.3946763/94‑1 (MQ=60)

                                                                                         CGAGCCCTTCATAGACCAGTGGGCGTGCCGGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGTCCCATTGCAGGTCTGC      <  SRR4302547.5388194/94‑1 (MQ=60)

                                                                                          GAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCG     >  SRR4302547.1420638/1‑94 (MQ=60)

                                                                                          GAGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCG     >  SRR4302547.846181/1‑94 (MQ=60)

                                                                                           AGCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCGC    <  SRR4302547.126244/94‑1 (MQ=60)

                                                                                            GCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCGCC   >  SRR4302547.2942073/1‑94 (MQ=60)

                                                                                            GCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCGCC   >  SRR4302547.4777918/1‑94 (MQ=60)

                                                                                            GCCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCGCC   <  SRR4302547.189174/94‑1 (MQ=60)

                                                                                             CCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCGCCC  <  SRR4302547.6217196/94‑1 (MQ=60)

ATGCGCCGCCAGTTCAAAGCCGAAACGACTGTACAGCGCCGGATCGCCCAGCGTCACCACTGCGGCATAGCCGAACTCATTAAGCGAATCGAGTCCTTCATAGACCAGTTGGCGTGCCAGCCCCTGTCCACGGTATTTTTCATCAACCGCCAACGGTGCCATGCCGACCCATTGCAGGTCTTCGCCC  >  NC_000913/3298019‑3298205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`