Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,674,812 (T)6→5 coding (1184/2076 nt) yhjG ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,674,8070T.84.9% 739.6 / 155.1 225coding (1189/2076 nt)yhjGhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (15/19);  new base . (84/107);  total (99/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 262 total aligned reads displayed.

CCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGC  >  NC_000913/3674715‑3674895
                                                                                            |                                                                                        
 cgccCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCtt                                                                                         >  2:1714514/1‑93 (MQ=255)
    ccTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCttttt                                                                                      <  1:3389204/93‑1 (MQ=255)
    ccTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCttttt                                                                                      <  1:3186332/93‑1 (MQ=255)
    ccTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCttttt                                                                                      <  1:2743791/93‑1 (MQ=255)
    ccTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCttttt                                                                                      <  2:1350666/93‑1 (MQ=255)
    ccTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCttttt                                                                                      <  2:3979832/93‑1 (MQ=255)
     cTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCtttttc                                                                                     <  2:894290/93‑2 (MQ=255)
      tttGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCtttttcg                                                                                    <  2:5564767/93‑3 (MQ=255)
       ttGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCtttttcgc                                                                                   <  2:2097294/93‑4 (MQ=255)
         gAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGccc                                                                                >  1:3096441/1‑93 (MQ=255)
          aaGCGCACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCct                                                                               <  1:2166734/93‑1 (MQ=255)
          aaGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGccc                                                                                <  1:754113/93‑1 (MQ=255)
          aaGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCct                                                                               <  2:3483847/93‑1 (MQ=255)
           aGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCct                                                                               >  2:6261074/1‑93 (MQ=255)
           aGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCct                                                                               <  1:5017353/93‑1 (MQ=255)
           aGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCctt                                                                              >  1:6021762/1‑93 (MQ=255)
           aGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑GTTTTCGCCctt                                                                              >  2:4259118/1‑93 (MQ=255)
             cGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGTCcttct                                                                            <  1:5522557/93‑1 (MQ=255)
               aaCATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCttcttc                                                                          <  2:2485061/93‑1 (MQ=255)
                aCATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTtcttct                                                                         >  2:6087011/1‑93 (MQ=255)
                 cATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTg                                                                        <  1:4258058/93‑1 (MQ=255)
                 cATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCCTCTTCTg                                                                        >  1:5192534/1‑93 (MQ=255)
                 cATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGACCGCATGCTGAACAC‑TTTTTCGCCCTTCTTCTg                                                                        >  2:2386961/1‑93 (MQ=255)
                      gCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAg                                                                   >  2:3928621/1‑93 (MQ=255)
                      gCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAg                                                                   >  1:1091454/1‑93 (MQ=255)
                        aTCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGAc                                                                 >  2:740437/1‑93 (MQ=255)
                         tcaaTAACGTCCAATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGAc                                                                 >  1:3341540/4‑93 (MQ=255)
                         tCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGAc                                                                 >  2:1140328/1‑93 (MQ=255)
                         tCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGAcc                                                                >  1:1024609/1‑93 (MQ=255)
                         tCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGAcc                                                                >  1:3493445/1‑93 (MQ=255)
                           cATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTGTTCGCCCTTCTTCTGTTCAGACCGt                                                              <  2:3335528/93‑1 (MQ=255)
                            aTAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGtt                                                             <  1:259596/93‑1 (MQ=255)
                            aTAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGtt                                                             <  2:4060002/93‑1 (MQ=255)
                            aTAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGtt                                                             <  1:3539332/93‑1 (MQ=255)
                             tAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGttt                                                            <  1:657094/93‑1 (MQ=255)
                             tAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGttt                                                            >  1:3734491/1‑93 (MQ=255)
                             tAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGttt                                                            <  1:6110662/93‑1 (MQ=255)
                             tAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGttt                                                            <  2:2732224/93‑1 (MQ=255)
                              aaCGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGttt                                                            <  2:4432577/93‑1 (MQ=255)
                              aaCGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTc                                                           >  2:4984341/1‑93 (MQ=255)
                                cGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGa                                                         <  1:430964/93‑1 (MQ=255)
                                 gTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGAc                                                        >  1:4734742/1‑93 (MQ=255)
                                  tCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACt                                                       <  2:4644166/93‑1 (MQ=255)
                                   cccATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTCGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACtt                                                      <  1:2071224/93‑1 (MQ=255)
                                    ccATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACttt                                                     <  2:2950809/93‑1 (MQ=255)
                                     cATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACtttt                                                    >  2:6311979/1‑93 (MQ=255)
                                      aTTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACtttt                                                    >  2:5220082/1‑93 (MQ=255)
                                      aTTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTc                                                   >  1:4537256/1‑93 (MQ=255)
                                        ttATCGGTTTCGAAGCGGTCATAAGTCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTg                                                 <  2:1562721/93‑1 (MQ=255)
                                         tATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGc                                                <  2:4160040/93‑1 (MQ=255)
                                         tATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGc                                                >  1:1812892/1‑93 (MQ=255)
                                         tATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGc                                                <  2:5371244/93‑1 (MQ=255)
                                          aTCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGcc                                               >  1:5414233/1‑93 (MQ=255)
                                          aTCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGcc                                               >  2:4884208/1‑93 (MQ=255)
                                             ggTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGcccc                                             >  2:3566507/1‑93 (MQ=255)
                                              gTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCtt                                           >  1:993367/1‑93 (MQ=255)
                                              gTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCtt                                           <  1:855507/93‑1 (MQ=255)
                                              gTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCtt                                           <  2:1461405/93‑1 (MQ=255)
                                              gTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACG‑TTTTTTCGCCCTTCTTCTGTTCAGACAGTTTCGACTTTTCTGCCCCtt                                           <  1:418765/93‑1 (MQ=255)
                                               tttCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGTCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCttt                                          >  1:2343051/1‑93 (MQ=255)
                                               tttCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCttt                                          >  1:1634194/1‑93 (MQ=255)
                                               tttCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCttt                                          <  1:3935875/93‑1 (MQ=255)
                                               tttCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCttt                                          >  2:5856452/1‑93 (MQ=255)
                                                ttCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTc                                         >  2:646648/1‑93 (MQ=255)
                                                ttCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTc                                         <  1:1069840/93‑1 (MQ=255)
                                                 tCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTcc                                        >  1:6255454/1‑93 (MQ=255)
                                                 tCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTcc                                        >  1:5734366/1‑93 (MQ=255)
                                                    aaGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCgg                                     >  1:2769721/1‑93 (MQ=255)
                                                      gCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGaa                                   >  2:2027336/1‑93 (MQ=255)
                                                        ggTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAAt                                  >  1:3266180/1‑93 (MQ=255)
                                                        ggTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATc                                 <  2:3159469/93‑1 (MQ=255)
                                                           cATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAAc                              <  2:4759084/93‑1 (MQ=255)
                                                             tAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGc                            <  2:5512449/93‑1 (MQ=255)
                                                             tAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGc                            <  1:1005866/93‑1 (MQ=255)
                                                             tAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGc                            <  1:2434522/93‑1 (MQ=255)
                                                              aaGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGcc                           <  2:4286745/93‑1 (MQ=255)
                                                               aGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCa                          >  1:4903421/1‑93 (MQ=255)
                                                               aGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCa                          >  1:2661602/1‑93 (MQ=255)
                                                                ggCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCaa                         <  2:3877722/93‑1 (MQ=255)
                                                                ggCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCaa                         >  1:5021547/1‑93 (MQ=255)
                                                                ggCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCaa                         >  2:2193709/1‑93 (MQ=255)
                                                                    ggaCTTTGGCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCaa                     <  1:2240212/91‑1 (MQ=255)
                                                                    gcaCTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCaa                     <  2:3680834/93‑1 (MQ=255)
                                                                    gcaCTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCaa                     <  1:1718150/93‑1 (MQ=255)
                                                                      aCTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAAc                    >  1:2830205/1‑93 (MQ=255)
                                                                           gCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTccc              <  1:3005644/93‑1 (MQ=255)
                                                                             ccGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAg            <  1:1439958/93‑1 (MQ=255)
                                                                               gCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGt          <  2:679340/93‑1 (MQ=255)
                                                                                cAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTc         >  2:1639786/1‑93 (MQ=255)
                                                                                cAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTc         >  2:1155040/1‑93 (MQ=255)
                                                                                cAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTc         <  2:5724566/93‑1 (MQ=255)
                                                                                 aGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTcc        >  2:2263083/1‑93 (MQ=255)
                                                                                   gCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGc      <  2:2862181/93‑1 (MQ=255)
                                                                                    cTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGcc     >  1:1269331/1‑93 (MQ=255)
                                                                                     tGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCa    <  2:3529201/93‑1 (MQ=255)
                                                                                     tGAACGC‑TTTTTCACCCTTCTTCTGTTCAGACCGTTTCGCCTTTTCTTCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCACGTCCGCCa    >  1:1794799/1‑93 (MQ=255)
                                                                                      gAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAg   <  2:3247610/93‑1 (MQ=255)
                                                                                      gAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAg   >  1:4007710/1‑93 (MQ=255)
                                                                                      gAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAg   >  1:3799993/1‑93 (MQ=255)
                                                                                      gAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACAGTCCCAGGTCCGCCAg   >  1:4386074/1‑93 (MQ=255)
                                                                                            |                                                                                        
CCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGC  >  NC_000913/3674715‑3674895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCAATTGC  >  NC_000913/3674719‑3674904
                                                                                             |                                                                                            
CCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTC                                                                                              <  SRR4302547.2289655/94‑1 (MQ=60)
CCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTC                                                                                              <  SRR4302547.2798823/94‑1 (MQ=60)
CCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTC                                                                                              <  SRR4302547.3458152/94‑1 (MQ=60)
CCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTC                                                                                              <  SRR4302547.3249821/94‑1 (MQ=60)
CCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTC                                                                                              <  SRR4302547.1344683/94‑1 (MQ=60)
  TTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGC                                                                                           >  SRR4302547.2178549/1‑94 (MQ=60)
   TTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCC                                                                                          <  SRR4302547.196529/94‑1 (MQ=60)
    TGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCC                                                                                         >  SRR4302547.3157801/1‑94 (MQ=60)
      AAGCGCACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTT                                                                                       <  SRR4302547.2210071/94‑1 (MQ=60)
      AAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCT                                                                                        <  SRR4302547.768327/94‑1 (MQ=60)
      AAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTT                                                                                       <  SRR4302547.3917083/94‑1 (MQ=60)
      AAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTT                                                                                       >  SRR4302547.6146742/1‑94 (MQ=60)
       AGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTT                                                                                       <  SRR4302547.5121049/94‑1 (MQ=60)
         CGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGTCCTTCTT                                                                                    <  SRR4302547.5636542/94‑1 (MQ=60)
           AACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCT                                                                                  <  SRR4302547.3227102/94‑1 (MQ=60)
           AACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCT                                                                                  <  SRR4302547.1057806/94‑1 (MQ=60)
            ACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTG                                                                                 <  SRR4302547.1137601/94‑1 (MQ=60)
            ACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCCTCTTCTG                                                                                 >  SRR4302547.5299402/1‑94 (MQ=60)
             CATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGT                                                                                <  SRR4302547.4345193/94‑1 (MQ=60)
              ATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTT                                                                               <  SRR4302547.35331/94‑1 (MQ=60)
              ATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTT                                                                               >  SRR4302547.5054944/1‑94 (MQ=60)
               TCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTT                                                                               <  SRR4302547.2862328/94‑1 (MQ=60)
               TCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTC                                                                              <  SRR4302547.3676647/94‑1 (MQ=60)
                 GGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAG                                                                            >  SRR4302547.1113326/1‑94 (MQ=60)
                   CATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGAC                                                                          >  SRR4302547.3884897/1‑94 (MQ=60)
                    ATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACC                                                                         <  SRR4302547.4053761/94‑1 (MQ=60)
                    ATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACC                                                                         >  SRR4302547.3444333/1‑94 (MQ=60)
                    ATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACC                                                                         >  SRR4302547.3249991/1‑94 (MQ=60)
                    ATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACC                                                                         >  SRR4302547.1044722/1‑94 (MQ=60)
                    ATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACC                                                                         >  SRR4302547.3564735/1‑94 (MQ=60)
                    ATCAATAACGTCCAATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGAC                                                                          >  SRR4302547.3409169/1‑94 (MQ=60)
                     TCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCG                                                                        <  SRR4302547.1517160/94‑1 (MQ=60)
                      CCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGT                                                                       >  SRR4302547.1109335/1‑94 (MQ=60)
                       CATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGT                                                                       >  SRR4302547.3135120/1‑94 (MQ=60)
                        ATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTT                                                                     <  SRR4302547.3611580/94‑1 (MQ=60)
                        ATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTT                                                                     <  SRR4302547.264449/94‑1 (MQ=60)
                        ATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTT                                                                     <  SRR4302547.4279340/94‑1 (MQ=60)
                        ATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTT                                                                     >  SRR4302547.3810742/1‑94 (MQ=60)
                         TAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTT                                                                     >  SRR4302547.4513099/1‑94 (MQ=60)
                         TAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTC                                                                    <  SRR4302547.6237415/94‑1 (MQ=60)
                         TAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTC                                                                    <  SRR4302547.1839583/94‑1 (MQ=60)
                         TAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTC                                                                    <  SRR4302547.669197/94‑1 (MQ=60)
                         TAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTC                                                                    <  SRR4302547.4356914/94‑1 (MQ=60)
                          AACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCG                                                                   <  SRR4302547.6342247/94‑1 (MQ=60)
                            CGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGAC                                                                 >  SRR4302547.2944386/1‑94 (MQ=60)
                            CGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGAC                                                                 >  SRR4302547.4832874/1‑94 (MQ=60)
                            CGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGAC                                                                 <  SRR4302547.438944/94‑1 (MQ=60)
                             GTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCATACCGTTTCGACT                                                                >  SRR4302547.5507667/1‑94 (MQ=60)
                               CCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTCGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTT                                                              <  SRR4302547.2112566/94‑1 (MQ=60)
                                CCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTT                                                             >  SRR4302547.1003567/1‑94 (MQ=60)
                                 CATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTC                                                            <  SRR4302547.5780144/94‑1 (MQ=60)
                                 CATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTC                                                            >  SRR4302547.4631036/1‑94 (MQ=60)
                                  ATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCT                                                           >  SRR4302547.6708047/1‑94 (MQ=60)
                                   TTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCT                                                           >  SRR4302547.2760921/1‑94 (MQ=60)
                                   TTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTG                                                          <  SRR4302547.4569759/94‑1 (MQ=60)
                                    TTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGC                                                         <  SRR4302547.245161/94‑1 (MQ=60)
                                    TTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGC                                                         >  SRR4302547.1816397/1‑94 (MQ=60)
                                    TTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGC                                                         >  SRR4302547.1848709/1‑94 (MQ=60)
                                     TATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCC                                                        >  SRR4302547.5526221/1‑94 (MQ=60)
                                       TCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCC                                                      <  SRR4302547.6421649/94‑1 (MQ=60)
                                         GGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTT                                                    >  SRR4302547.1012719/1‑94 (MQ=60)
                                          GTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGTCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTT                                                   >  SRR4302547.2390532/1‑94 (MQ=60)
                                          GTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTT                                                   >  SRR4302547.1666520/1‑94 (MQ=60)
                                          GTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTT                                                   >  SRR4302547.866480/1‑94 (MQ=60)
                                          GTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTT                                                   <  SRR4302547.871852/94‑1 (MQ=60)
                                          GTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACG‑TTTTTTCGCCCTTCTTCTGTTCAGACAGTTTCGACTTTTCTGCCCCTTT                                                   <  SRR4302547.426528/94‑1 (MQ=60)
                                           TTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTC                                                  <  SRR4302547.4015915/94‑1 (MQ=60)
                                            TTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCC                                                 <  SRR4302547.4059935/94‑1 (MQ=60)
                                            TTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCC                                                 >  SRR4302547.5852833/1‑94 (MQ=60)
                                            TTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCC                                                 >  SRR4302547.6385389/1‑94 (MQ=60)
                                            TTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCC                                                 <  SRR4302547.1091141/94‑1 (MQ=60)
                                              CGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCC                                                >  SRR4302547.5288722/1‑94 (MQ=60)
                                              CGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCC                                                >  SRR4302547.6233792/1‑94 (MQ=60)
                                              CGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCC                                                <  SRR4302547.1054890/94‑1 (MQ=60)
                                              CGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCG                                               >  SRR4302547.3426805/1‑94 (MQ=60)
                                               GAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGG                                              <  SRR4302547.2630907/94‑1 (MQ=60)
                                               GAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGG                                              >  SRR4302547.2213402/1‑94 (MQ=60)
                                               GAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGG                                              >  SRR4302547.2825213/1‑94 (MQ=60)
                                                 AGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAA                                            >  SRR4302547.4414732/1‑94 (MQ=60)
                                                  GCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAAT                                           >  SRR4302547.5098981/1‑94 (MQ=60)
                                                   CGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAAT                                           <  SRR4302547.5124476/94‑1 (MQ=60)
                                                   CGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAAT                                           >  SRR4302547.3331527/1‑94 (MQ=60)
                                                    GGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCA                                         <  SRR4302547.6758037/94‑1 (MQ=60)
                                                    GGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCA                                         >  SRR4302547.6187093/1‑94 (MQ=60)
                                                     GTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCA                                         <  SRR4302547.1729529/94‑1 (MQ=60)
                                                      TCATAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAAC                                       <  SRR4302547.137894/94‑1 (MQ=60)
                                                         TAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCC                                    <  SRR4302547.1025500/94‑1 (MQ=60)
                                                         TAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCC                                    <  SRR4302547.2483771/94‑1 (MQ=60)
                                                         TAAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCC                                    >  SRR4302547.2817657/1‑94 (MQ=60)
                                                          AAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCA                                   >  SRR4302547.2961651/1‑94 (MQ=60)
                                                          AAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCA                                   >  SRR4302547.2715085/1‑94 (MQ=60)
                                                          AAGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCA                                   >  SRR4302547.5004964/1‑94 (MQ=60)
                                                           AGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCA                                   >  SRR4302547.2539487/1‑94 (MQ=60)
                                                           AGGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAA                                  >  SRR4302547.5125310/1‑94 (MQ=60)
                                                            GGCAGCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAAT                                 <  SRR4302547.5985909/94‑1 (MQ=60)
                                                               AGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGCCTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCA                               <  SRR4302547.4866744/94‑1 (MQ=60)
                                                               AGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCA                               <  SRR4302547.6289033/94‑1 (MQ=60)
                                                                GGACTTTGGCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAAC                             <  SRR4302547.2285390/94‑1 (MQ=60)
                                                                GCACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAAC                             <  SRR4302547.1751937/94‑1 (MQ=60)
                                                                 CACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAAC                             >  SRR4302547.2886799/1‑94 (MQ=60)
                                                                 CACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACG                            <  SRR4302547.2256376/94‑1 (MQ=60)
                                                                 CACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACG                            >  SRR4302547.3293457/1‑94 (MQ=60)
                                                                  ACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTGCAGACCGTTTCGACTTGTCTGCCCCTTTCCCGGAATCAACGCCAATCAACG                            <  SRR4302547.4336043/94‑1 (MQ=60)
                                                                  ACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGG                           >  SRR4302547.313037/1‑94 (MQ=60)
                                                                  ACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGG                           >  SRR4302547.1741508/1‑94 (MQ=60)
                                                                  ACTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGG                           >  SRR4302547.1833714/1‑94 (MQ=60)
                                                                   CTTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGT                          <  SRR4302547.360/94‑1 (MQ=60)
                                                                    TTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTC                         <  SRR4302547.2708814/94‑1 (MQ=60)
                                                                    TTTGCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTC                         >  SRR4302547.2016283/1‑94 (MQ=60)
                                                                       GCCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCA                      <  SRR4302547.3065419/94‑1 (MQ=60)
                                                                        CCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCA                      <  SRR4302547.5146432/94‑1 (MQ=60)
                                                                        CCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAG                     >  SRR4302547.2772494/1‑94 (MQ=60)
                                                                        CCCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAG                     <  SRR4302547.3662590/94‑1 (MQ=60)
                                                                         CCGCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGG                    <  SRR4302547.1468749/94‑1 (MQ=60)
                                                                           GCAGGCTGACCGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTC                  <  SRR4302547.2808439/94‑1 (MQ=60)
                                                                           GCAGGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTC                  >  SRR4302547.1253130/1‑94 (MQ=60)
                                                                              GGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTGCCGGAATCAACGCCAATCAACGGTCCCAGGTCGGC               >  SRR4302547.1036848/1‑94 (MQ=60)
                                                                              GGCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGC               <  SRR4302547.4702922/94‑1 (MQ=60)
                                                                               GCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCC              <  SRR4302547.3552364/94‑1 (MQ=60)
                                                                               GCTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCC              >  SRR4302547.1294891/1‑94 (MQ=60)
                                                                                CTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCA             >  SRR4302547.5532176/1‑94 (MQ=60)
                                                                                CTGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCA             <  SRR4302547.4396932/94‑1 (MQ=60)
                                                                                CTGAACGC‑TTTTTCACCCTTCTTCTGTTCAGACCGTTTCGCCTTTTCTTCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCACGTCCGCCA             >  SRR4302547.1830316/1‑94 (MQ=60)
                                                                                 TGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAG            >  SRR4302547.3877453/1‑94 (MQ=60)
                                                                                 TGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAG            >  SRR4302547.4089169/1‑94 (MQ=60)
                                                                                 TGAACGC‑TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACAGTCCCAGGTCCGCCAG            >  SRR4302547.4476311/1‑94 (MQ=60)
                                                                                     atgcTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCG         <  SRR4302547.5098012/90‑1 (MQ=60)
                                                                                       gcTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGCCTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCA       <  SRR4302547.6193777/92‑1 (MQ=60)
                                                                                        CTTTTTCGCGCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCAA      >  SRR4302547.6677798/1‑94 (MQ=60)
                                                                                        CTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATAAACGGTCCCAGGTCCGCCAGCCGCAA      >  SRR4302547.3322949/1‑94 (MQ=60)
                                                                                         TTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCAAT     >  SRR4302547.2937599/1‑94 (MQ=60)
                                                                                          TTTTCGCCTTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCAATT    <  SRR4302547.4444085/94‑1 (MQ=60)
                                                                                          TTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCAATT    <  SRR4302547.995761/94‑1 (MQ=60)
                                                                                           TTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCACTTG   >  SRR4302547.1563686/1‑94 (MQ=60)
                                                                                            TTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCAATTGC  >  SRR4302547.1133162/1‑94 (MQ=60)
                                                                                             |                                                                                            
CCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCCGCAGGCTGAACGCTTTTTTCGCCCTTCTTCTGTTCAGACCGTTTCGACTTTTCTGCCCCTTTCCCGGAATCAACGCCAATCAACGGTCCCAGGTCCGCCAGCCGCAATTGC  >  NC_000913/3674719‑3674904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑