Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,951,168	+G	coding (37/1818 nt)	ilvD →	dihydroxyacid dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,951,168	1	.	G	100.0%	558.0 / NA	154	P13A (CCC→GCC)	ilvD	dihydroxyacid dehydratase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (17/137); total (17/137)

Only 100 of 186 total aligned reads displayed.

GGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑G‑GC‑‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC  >  NC_000913/3951086‑3951248

 ggAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGaa                                                                         <  1:2396414/93‑1 (MQ=255)

 ggAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGaa                                                                         <  2:1475713/93‑1 (MQ=255)

 ggAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGaa                                                                         <  2:4029368/93‑1 (MQ=255)

  gAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAAt                                                                        <  1:3775172/93‑1 (MQ=255)

  gAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAAt                                                                        <  2:1194941/93‑1 (MQ=255)

  gAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAAt                                                                        <  2:5666737/93‑1 (MQ=255)

   aGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATg                                                                       <  2:5108979/93‑1 (MQ=255)

   aGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATg                                                                       <  2:1341003/93‑1 (MQ=255)

   aGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGAAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATg                                                                       <  2:3564166/93‑1 (MQ=255)

    gTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGa                                                                      <  1:5125151/93‑1 (MQ=255)

    gTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGa                                                                      <  2:6441602/93‑1 (MQ=255)

     taaataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGAc                                                                     <  2:1134567/93‑1 (MQ=255)

     taaataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGAc                                                                     <  2:4209347/93‑1 (MQ=255)

     taaataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGAc                                                                     <  1:3469730/93‑1 (MQ=255)

     taaataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGACGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGAc                                                                     <  1:5861433/93‑1 (MQ=255)

        ataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGa                                                                  <  1:1418240/93‑1 (MQ=255)

         taaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGAc                                                                 <  1:1705495/93‑1 (MQ=255)

           aaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGc                                                               <  1:35913/93‑1 (MQ=255)

           aaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGc                                                               <  1:4359777/93‑1 (MQ=255)

            aGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGcc                                                              <  2:4483451/93‑1 (MQ=255)

             gTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑C‑‑GTGG‑‑G‑GCG‑CCACCCGCATGAGCGACGCCg                                                             >  2:5638748/1‑93 (MQ=255)

              tATGCCTACGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGC‑‑T‑‑GTGG‑‑G‑GCG‑CCACCGGGATGAACGACCCCgc                                                            >  1:6497830/1‑92 (MQ=255)

              tATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGC‑‑TGGGG‑G‑‑G‑GG‑‑CCACCCGAATGACCGACACCGa                                                            >  1:277252/1‑93 (MQ=255)

               aTGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGAt                                                           <  1:3599008/93‑1 (MQ=255)

               aTGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGCCGTGCGC‑‑T‑‑GT‑GGCG‑GG‑‑GCCCCGGGATGACCGACGCCGAt                                                           >  1:6334153/1‑93 (MQ=255)

                tGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGAtt                                                          <  1:2835884/93‑1 (MQ=255)

                 gCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGAttt                                                         <  2:2292041/93‑1 (MQ=255)

                  ccTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTc                                                        <  2:5519424/93‑1 (MQ=255)

                    tAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCCCCCGAATGACCGACGCCGCGTTCgg                                                      >  1:198247/1‑93 (MQ=255)

                    caaGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCgg                                                      <  2:5433914/92‑1 (MQ=255)

                     aaGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGt                                                     <  2:515027/93‑1 (MQ=255)

                       gTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGGCGTGCGC‑‑C‑‑GT‑G‑‑GCGCG‑GCGCCGGGATAACAGACGCCGATTTTGGtga                                                   >  2:4995088/1‑91 (MQ=255)

                         tccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GA‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGc                                                 <  2:4816709/92‑1 (MQ=255)

                         aCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGc                                                 <  1:4397548/93‑1 (MQ=255)

                         aCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGc                                                 <  1:4692843/93‑1 (MQ=255)

                         aCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGc                                                 <  2:2018458/93‑1 (MQ=255)

                         aCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGc                                                 <  2:4490298/93‑1 (MQ=255)

                          ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGcc                                                <  2:2764325/93‑1 (MQ=255)

                          ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGcc                                                <  2:4873595/93‑1 (MQ=255)

                          ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTACGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGcc                                                <  1:5919106/93‑1 (MQ=255)

                          ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCCCGTGCGG‑‑C‑‑GT‑G‑‑GCGCG‑GCCCCCGGATGAACGACCCCGCTTTCGGTTAggc                                                >  2:3256058/1‑91 (MQ=255)

                            gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGGATGACCGACGCCGAGTTTGGGAAGCCGa                                              >  1:4980050/1‑93 (MQ=255)

                            gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGa                                              <  2:1866186/93‑1 (MQ=255)

                            gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGGGCCGT‑‑GG‑G‑‑G‑GG‑‑GCACCGGAATGAACCACGCCGCTTTTGGGAAGCCGa                                              >  2:3089052/1‑93 (MQ=255)

                            gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCCTGCGC‑‑C‑‑GT‑G‑‑GCGCG‑CCACCCGGAAGAACGACGCCGGTTTTGGTAAggcca                                              >  2:4555907/1‑89 (MQ=255)

                            gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGC‑‑T‑‑GTGG‑‑G‑GCG‑CCCCCCGAATGACCCACGCCCATTTTTGTAAGCCGa                                              >  2:1236335/1‑93 (MQ=255)

                             ttCCGCCACCACCACTCATGGTCGTAATATGGCGTGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGGATGACCGCCGCCGATTTCGGTACGCCCAt                                             >  2:478475/1‑93 (MQ=255)

                              tCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGAtt                                            <  1:3173292/93‑1 (MQ=255)

                              tCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGAtt                                            <  1:4250919/93‑1 (MQ=255)

                              tCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGAtt                                            <  1:5106642/93‑1 (MQ=255)

                              tCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGAtt                                            <  2:6030527/93‑1 (MQ=255)

                               ccGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTa                                           <  2:2296920/93‑1 (MQ=255)

                               ccGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTa                                           <  2:5586126/93‑1 (MQ=255)

                                cGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTAt                                          <  1:6244693/93‑1 (MQ=255)

                                cGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTAt                                          <  1:5653559/93‑1 (MQ=255)

                                cGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTAt                                          <  1:2278729/93‑1 (MQ=255)

                                cGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTAt                                          <  1:1146936/93‑1 (MQ=255)

                                 gCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATc                                         <  1:5283127/93‑1 (MQ=255)

                                 gCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGC‑‑T‑‑GTGG‑‑G‑GCG‑CCACCCGAATGACCGACGCCCATTTCGGGAAGCCCATTAtt                                         >  2:876952/1‑92 (MQ=255)

                                   caccaccacTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATcgc                                       <  2:6621356/93‑1 (MQ=255)

                                   caccaccacTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATcgc                                       <  2:6290012/93‑1 (MQ=255)

                                    accaccacTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATcgcg                                      <  2:5932214/93‑1 (MQ=255)

                                     ccaccacTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCgg                                     <  2:840730/93‑1 (MQ=255)

                                     ccaccacTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCgg                                     <  1:2580609/93‑1 (MQ=255)

                                      caccacTCATGGTCGTAATATGGCGGGTGCTTGTCCGC‑‑C‑‑GG‑G‑‑GCGCGGCCCCCGCAATG‑GCGACGGCGGTTTCGGGGAGCCGAATAACGCggc                                    >  2:2964702/1‑92 (MQ=255)

                                      caccacTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGt                                    <  2:3152781/93‑1 (MQ=255)

                                        ccacTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTtg                                  <  1:2082352/93‑1 (MQ=255)

                                           cTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGa                               <  2:6062745/93‑1 (MQ=255)

                                            tCATGGTCGTAATATGGCGGGTGCTCTTGCGC‑‑TG‑GG‑G‑‑G‑GCG‑CCACCCGCATGACCGACGCCGGCATTGGGAAGCCGATTTTCGCCGTTGTGaa                              >  2:3031911/1‑93 (MQ=255)

                                            tCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGaa                              <  1:402842/93‑1 (MQ=255)

                                            tCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCCGGATGACCGACACCGCCTTCGGTAAGCCGATTATCGCGGGTGTGaa                              >  1:2100665/1‑93 (MQ=255)

                                             cATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAc                             <  1:2478648/93‑1 (MQ=255)

                                             cATGGTCGGAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAc                             <  1:2636238/93‑1 (MQ=255)

                                              aTGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACt                            <  2:3889135/93‑1 (MQ=255)

                                              aTGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACt                            <  1:6383240/93‑1 (MQ=255)

                                              aTGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACt                            <  1:1305555/93‑1 (MQ=255)

                                                     tAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCAc                     <  1:3645955/93‑1 (MQ=255)

                                                      aaTATGGCGGGGGCTCGTGCGC‑‑T‑‑GTGG‑‑G‑GCG‑CCCCCCGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGGACACGTTcccc                    >  2:500868/1‑93 (MQ=255)

                                                       atatGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGGATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCAccc                   <  2:1769028/93‑1 (MQ=255)

                                                        tatGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCCGAATGACCCACCCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAATCGTTCACCCa                  >  2:2610573/1‑93 (MQ=255)

                                                          tGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAt                <  2:6154082/93‑1 (MQ=255)

                                                           ggCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAtt               >  2:1873631/1‑93 (MQ=255)

                                                            gCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAttt              <  1:6293128/93‑1 (MQ=255)

                                                            gCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAATCGTTCACCCAAttt              >  1:5714744/1‑93 (MQ=255)

                                                             cGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTg             <  2:3662701/93‑1 (MQ=255)

                                                               ggTGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTa           >  1:1550013/1‑93 (MQ=255)

                                                                 tGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAcc         >  1:3099371/1‑93 (MQ=255)

                                                                 tGCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAcc         >  1:1542356/1‑93 (MQ=255)

                                                                  gCTCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCg        <  2:6577396/93‑1 (MQ=255)

                                                                    tCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCggg      >  2:5766200/1‑93 (MQ=255)

                                                                    tCGTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCggg      >  2:4976855/1‑93 (MQ=255)

                                                                      gTGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTc    <  1:1904574/93‑1 (MQ=255)

                                                                       tGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   <  2:1425164/93‑1 (MQ=255)

                                                                       tGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   >  1:6276539/1‑93 (MQ=255)

                                                                       tGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   >  2:766954/1‑93 (MQ=255)

                                                                       tGCGC‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   <  1:2971272/93‑1 (MQ=255)

                                                                        gcgc‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAc  >  1:5386521/1‑93 (MQ=255)

                                                                        gcgc‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAc  <  2:169121/93‑1 (MQ=255)

                                                                        gcgc‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAc  >  2:6312448/1‑93 (MQ=255)

                                                                        gcgc‑‑T‑‑GT‑G‑‑GCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAc  <  2:1920445/93‑1 (MQ=255)

GGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGC‑‑T‑‑GT‑G‑‑G‑GC‑‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC  >  NC_000913/3951086‑3951248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GG‑‑‑G‑‑C‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCCATCTGCGCG  >  NC_000913/3951086‑3951261

GGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAA                                                                                      <  SRR4302547.3745051/94‑1 (MQ=60)

 GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAAT                                                                                     <  SRR4302547.2444960/94‑1 (MQ=60)

  GAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATG                                                                                    <  SRR4302547.3852166/94‑1 (MQ=60)

    GTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGAC                                                                                  <  SRR4302547.5230752/94‑1 (MQ=60)

     TAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACC                                                                                 <  SRR4302547.3540489/94‑1 (MQ=60)

     TAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGACGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACC                                                                                 <  SRR4302547.5982738/94‑1 (MQ=60)

      AAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCG                                                                                <  SRR4302547.2535281/94‑1 (MQ=60)

        ATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGAC                                                                              <  SRR4302547.1446629/94‑1 (MQ=60)

        ATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGAC                                                                              <  SRR4302547.4446242/94‑1 (MQ=60)

         TAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACG                                                                             <  SRR4302547.1739045/94‑1 (MQ=60)

           AAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCC                                                                           <  SRR4302547.4449328/94‑1 (MQ=60)

           AAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCC                                                                           <  SRR4302547.36568/94‑1 (MQ=60)

           AAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCC                                                                           <  SRR4302547.2362325/94‑1 (MQ=60)

             GTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGA                                                                         <  SRR4302547.6022499/94‑1 (MQ=60)

             GTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGCTGGGG‑‑‑‑GG‑‑‑G‑‑G‑CCACCCGAATGACCGACACCGA                                                                         >  SRR4302547.282426/1‑94 (MQ=60)

              TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGAT                                                                        <  SRR4302547.1653218/94‑1 (MQ=60)

              TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGAT                                                                        <  SRR4302547.4467774/94‑1 (MQ=60)

              TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGCCGTGCGCT‑‑GTGGCGGG‑‑‑G‑‑C‑C‑‑CCGGGATGACCGACGCCGAT                                                                        >  SRR4302547.6466042/1‑94 (MQ=60)

               ATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATT                                                                       <  SRR4302547.3538268/94‑1 (MQ=60)

               ATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATT                                                                       <  SRR4302547.3672395/94‑1 (MQ=60)

               ATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATT                                                                       <  SRR4302547.3169241/94‑1 (MQ=60)

                TGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTT                                                                      <  SRR4302547.2892578/94‑1 (MQ=60)

                 GCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTC                                                                     <  SRR4302547.2133248/94‑1 (MQ=60)

                   CTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGG                                                                   <  SRR4302547.5925490/94‑1 (MQ=60)

                   CTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGCT‑‑GT‑‑‑‑GGCGCG‑‑C‑CC‑CCCGAATGACCGACGCCGCGTTCGG                                                                   >  SRR4302547.201949/1‑94 (MQ=60)

                      AGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGCT‑‑GT‑‑‑‑GG‑‑‑GGCG‑CCACCCGGATGACCGACGCCGATTTtgggag                                                                >  SRR4302547.530228/1‑88 (MQ=60)

                       GTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAG                                                               <  SRR4302547.640743/94‑1 (MQ=60)

                         ACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCC                                                             <  SRR4302547.5431758/94‑1 (MQ=60)

                         ACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCC                                                             <  SRR4302547.4488095/94‑1 (MQ=60)

                         ACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCC                                                             <  SRR4302547.1528096/94‑1 (MQ=60)

                         ACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCC                                                             <  SRR4302547.4790034/94‑1 (MQ=60)

                          CCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTACGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCG                                                            <  SRR4302547.6041783/94‑1 (MQ=60)

                           CGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGGATGACCGACGCCGAGTTTGGGAAGCCGA                                                           >  SRR4302547.5083048/1‑94 (MQ=60)

                             TTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATT                                                         <  SRR4302547.4161697/94‑1 (MQ=60)

                              TCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCTACCGGAAGGTCCGACTCCGATTTCGGTAATCCGATTA                                                        <  SRR4302547.5211886/94‑1 (MQ=60)

                              TCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                                        <  SRR4302547.5211887/94‑1 (MQ=60)

                              TCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                                        <  SRR4302547.4337888/94‑1 (MQ=60)

                              TCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                                        <  SRR4302547.3236467/94‑1 (MQ=60)

                                CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                                      <  SRR4302547.1170129/94‑1 (MQ=60)

                                CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                                      <  SRR4302547.5770273/94‑1 (MQ=60)

                                CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                                      <  SRR4302547.2324849/94‑1 (MQ=60)

                                CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                                      <  SRR4302547.6374412/94‑1 (MQ=60)

                                 GCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCG                                                     <  SRR4302547.1437491/94‑1 (MQ=60)

                                 GCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCG                                                     <  SRR4302547.3876932/94‑1 (MQ=60)

                                 GCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCG                                                     <  SRR4302547.5392111/94‑1 (MQ=60)

                                   CACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCG                                                   <  SRR4302547.1916453/94‑1 (MQ=60)

                                     CCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGT                                                 <  SRR4302547.2632688/94‑1 (MQ=60)

                                     CCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGT                                                 <  SRR4302547.6706623/94‑1 (MQ=60)

                                        CCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGT                                              <  SRR4302547.2123876/94‑1 (MQ=60)

                                           CTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAA                                           <  SRR4302547.6398165/94‑1 (MQ=60)

                                           CTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCCGGATGACCGACACCGCCTTCGGTAAGCCGATTATCGCGGGTGTGAA                                           >  SRR4302547.2142534/1‑94 (MQ=50)

                                           CTCATGGTCGTAATATGGCGGGGGCTCGTGCGCT‑‑GT‑‑‑‑GGCGCG‑‑C‑CCCCCGG‑ATGAACGACGCCGATTTCTGTAAGGCGATTATCGCGGGTGTGGA                                           >  SRR4302547.2521413/1‑94 (MQ=40)

                                           CTCATGGTCGTAATATGGCGGGGGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCCGGATGACCGACGCCGATTTCGGTAAGCCGATTATCTCGGGTGTGAG                                           >  SRR4302547.1427676/1‑94 (MQ=60)

                                            TCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAC                                          <  SRR4302547.410323/94‑1 (MQ=60)

                                             CATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                                         <  SRR4302547.5221482/94‑1 (MQ=60)

                                             CATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                                         <  SRR4302547.2528749/94‑1 (MQ=60)

                                             CATGGTCGGAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                                         <  SRR4302547.2689323/94‑1 (MQ=60)

                                              ATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTC                                        <  SRR4302547.6516447/94‑1 (MQ=60)

                                              ATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTC                                        <  SRR4302547.1331811/94‑1 (MQ=60)

                                                GGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGT                                      <  SRR4302547.2303540/94‑1 (MQ=60)

                                                   CGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCA                                   <  SRR4302547.6529114/94‑1 (MQ=60)

                                                   CGTAATATGGCGGGGGGTCGTGCGCT‑‑GT‑‑‑‑GG‑‑‑GGCG‑CCACCCGGATGACCGACGCCGCTTTCGGTAAGCCGATTATCGCGGTTGTGGACTCGTTtc                                   >  SRR4302547.4977705/1‑92 (MQ=49)

                                                     TAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACC                                 <  SRR4302547.3720321/94‑1 (MQ=60)

                                                      TATATGGCGGGGGCTCGTGCGCT‑‑GT‑‑‑‑GGGGCG‑‑C‑CC‑CCGGGATGACCGACGCCGATTTCGGTAAACCGATTATCGCGGTTGTGAACTCGTTCACCC                                >  SRR4302547.597426/1‑94 (MQ=60)

                                                       ATATGGCGGGTGCTCGTGCGCC‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGCCCCCGATTTCGGTAAGCCGATTATCGCGGTTTTGCAATCGTTCGCCCA                               >  SRR4302547.1985700/1‑94 (MQ=46)

                                                         ATGGCGGGGGCTCGTGCGCT‑‑GT‑‑‑‑GG‑‑‑GGCG‑CCACCGGGATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGGTGTGGACTCGTTCACCCCAT                             >  SRR4302547.3874972/1‑94 (MQ=60)

                                                          TGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATT                            <  SRR4302547.2996564/94‑1 (MQ=60)

                                                           GGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTT                           <  SRR4302547.246606/94‑1 (MQ=60)

                                                           GGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTT                           <  SRR4302547.2644900/94‑1 (MQ=60)

                                                           GGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAATCGTTCACCCAATTT                           >  SRR4302547.5832776/1‑94 (MQ=60)

                                                            GCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTG                          <  SRR4302547.6423945/94‑1 (MQ=60)

                                                              GGGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA                        >  SRR4302547.1580874/1‑94 (MQ=60)

                                                               GGTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC                       <  SRR4302547.306099/94‑1 (MQ=60)

                                                                GTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC                      >  SRR4302547.1573056/1‑94 (MQ=60)

                                                                GTGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC                      >  SRR4302547.3160769/1‑94 (MQ=60)

                                                                 TGCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCG                     <  SRR4302547.6371878/94‑1 (MQ=60)

                                                                  GCTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGG                    >  SRR4302547.5697117/1‑94 (MQ=60)

                                                                   CTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGG                   >  SRR4302547.3679830/1‑94 (MQ=60)

                                                                   CTCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGG                   >  SRR4302547.1577728/1‑94 (MQ=60)

                                                                    TCGTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGT                  <  SRR4302547.1994576/94‑1 (MQ=60)

                                                                      GTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCA                >  SRR4302547.6406935/1‑94 (MQ=60)

                                                                      GTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCA                <  SRR4302547.1942258/94‑1 (MQ=60)

                                                                      GTGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCA                <  SRR4302547.4998749/94‑1 (MQ=60)

                                                                       TGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC               <  SRR4302547.3030413/94‑1 (MQ=60)

                                                                       TGCGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC               >  SRR4302547.5497748/1‑94 (MQ=60)

                                                                         CGCT‑‑GT‑‑‑‑GGC‑‑G‑‑CGCCACCGGAATGACCGCCGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGT             >  SRR4302547.4512587/1‑94 (MQ=60)

                                                                                             G‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCCATCTGCGCG  >  SRR4302547.3126253/1‑94 (MQ=60)

                                                                                             G‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCCATCTGCGCG  >  SRR4302547.478668/1‑94 (MQ=60)

GGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCT‑‑GT‑‑‑‑GG‑‑‑G‑‑C‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCCATCTGCGCG  >  NC_000913/3951086‑3951261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`