Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,972,637 2 bp→GC coding (430‑431/546 nt) wecD → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,972,6370CG100.0% 872.8 / NA 236R144A (CGT→GCT) wecDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (115/121);  total (115/121)
*NC_0009133,972,6380GC100.0% 868.1 / NA 236R144A (CGT→GCT) wecDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (115/121);  total (115/121)

Only 100 of 240 total aligned reads displayed.

TCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAG  >  NC_000913/3972551‑3972724
                                                                                      ||                                                                                      
tCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTcgcg                                                                                   >  1:1440498/1‑93 (MQ=255)
tCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTcgcg                                                                                   <  2:4319536/93‑1 (MQ=255)
 cAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCgg                                                                                  >  2:2520060/1‑93 (MQ=255)
 cAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGAGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCgg                                                                                  >  2:3839911/1‑93 (MQ=255)
  aaTGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGt                                                                                 <  2:771890/93‑1 (MQ=255)
   aTGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTa                                                                                >  1:213239/1‑93 (MQ=255)
    tGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTaa                                                                               <  2:5783929/93‑1 (MQ=255)
       gACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAaac                                                                            >  1:4950269/1‑93 (MQ=255)
       gACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAaac                                                                            >  2:3284054/1‑93 (MQ=255)
        aCAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAaaca                                                                           >  1:5093098/1‑93 (MQ=255)
        aCAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAaaca                                                                           >  1:6437735/1‑93 (MQ=255)
          aGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAaacaac                                                                         <  2:1176766/93‑1 (MQ=255)
          aGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAaacaac                                                                         <  1:813689/93‑1 (MQ=255)
          aGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAaacaac                                                                         <  1:3914857/93‑1 (MQ=255)
           gATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACt                                                                        >  2:1392809/1‑93 (MQ=255)
           gATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACt                                                                        >  2:3599794/1‑93 (MQ=255)
           gATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACt                                                                        >  1:1272604/1‑93 (MQ=255)
             tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACttt                                                                      >  2:5168220/1‑93 (MQ=255)
             tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACttt                                                                      <  1:6584220/93‑1 (MQ=255)
             tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACttt                                                                      <  2:6376881/93‑1 (MQ=255)
             tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACttt                                                                      <  1:1928878/93‑1 (MQ=255)
             tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACttt                                                                      <  2:4804422/93‑1 (MQ=255)
              gcgcGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTg                                                                     <  1:4133676/93‑1 (MQ=255)
              gcgcGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTg                                                                     >  2:2962830/1‑93 (MQ=255)
               cgcgAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGc                                                                    <  2:4654346/93‑1 (MQ=255)
                gcgAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCg                                                                   <  2:1709607/93‑1 (MQ=255)
                 cgAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCgg                                                                  <  1:4986335/93‑1 (MQ=255)
                  gAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCggg                                                                 >  2:2642888/1‑93 (MQ=255)
                    aTTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTg                                                               >  2:3385617/1‑93 (MQ=255)
                    aTTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTg                                                               <  2:5225934/93‑1 (MQ=255)
                    aTTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTg                                                               <  1:6573845/93‑1 (MQ=255)
                     ttGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTgg                                                              >  1:5868342/1‑93 (MQ=255)
                     ttGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTgg                                                              >  2:1918773/1‑93 (MQ=255)
                     ttGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTgg                                                              <  2:4534302/93‑1 (MQ=255)
                      tGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGc                                                             <  2:3174465/93‑1 (MQ=255)
                        gCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGa                                                           >  1:2749558/1‑93 (MQ=255)
                         ccTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGAc                                                          <  2:2489765/93‑1 (MQ=255)
                          ctgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGAcc                                                         >  2:5856733/1‑93 (MQ=255)
                          ctgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGAcc                                                         >  1:3519445/1‑93 (MQ=255)
                          ctgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGAcc                                                         >  2:5842196/1‑93 (MQ=255)
                           tgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGAccc                                                        <  1:3068188/93‑1 (MQ=255)
                           tgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGAccc                                                        >  1:382544/1‑93 (MQ=255)
                            gctggctgGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCa                                                       <  1:1836921/93‑1 (MQ=255)
                              tggctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCaaa                                                     >  1:1586969/1‑93 (MQ=255)
                               ggctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAAt                                                    <  1:2766222/93‑1 (MQ=255)
                                 ctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATgg                                                  >  2:1062377/1‑93 (MQ=255)
                                 ctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATgg                                                  <  1:3179218/93‑1 (MQ=255)
                                  tggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATggg                                                 >  1:5332306/1‑93 (MQ=255)
                                  tggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATggg                                                 <  2:5978598/93‑1 (MQ=255)
                                   ggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGc                                                >  2:4166512/1‑93 (MQ=255)
                                   ggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGc                                                >  1:2022107/1‑93 (MQ=255)
                                     aCGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCaa                                              <  2:4712113/93‑1 (MQ=255)
                                       gcgGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAaca                                            >  1:2470803/1‑93 (MQ=255)
                                        cgGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAacac                                           >  2:6437750/1‑93 (MQ=255)
                                        cgGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAacac                                           >  1:4772715/1‑93 (MQ=255)
                                         ggTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAcc                                          >  2:4965163/1‑93 (MQ=255)
                                          gTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccg                                         <  1:6012136/93‑1 (MQ=255)
                                           tGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgc                                        <  2:554134/93‑1 (MQ=255)
                                            gCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgcc                                       <  2:1003047/93‑1 (MQ=255)
                                             cAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgccg                                      <  1:4376166/93‑1 (MQ=255)
                                              aGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACcgccgc                                     <  1:4211803/93‑1 (MQ=255)
                                              aGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACcgccgc                                     <  2:4423265/93‑1 (MQ=255)
                                              aGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACcgccgc                                     <  1:1529202/93‑1 (MQ=255)
                                               ggTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGCCCCAAATGGGCAACACCGCcgcg                                    <  1:5248632/93‑1 (MQ=255)
                                                     gagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaaa                              <  2:1620460/93‑1 (MQ=255)
                                                     gagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaaa                              >  2:5743737/1‑93 (MQ=255)
                                                     gagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaaa                              >  2:1523423/1‑93 (MQ=255)
                                                     gagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaaa                              >  2:6339032/1‑93 (MQ=255)
                                                      agctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAAc                             >  2:3647107/1‑93 (MQ=255)
                                                        ctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGa                           <  2:2780355/93‑1 (MQ=255)
                                                           aTGCAAACGGCGCTAAACTGGTTGTATGAAGGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGatac                        <  1:3258248/93‑1 (MQ=255)
                                                           aTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGatac                        >  2:5491254/1‑93 (MQ=255)
                                                           aTGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAAATTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGatac                        >  2:5311919/1‑93 (MQ=255)
                                                            tGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGataca                       >  1:2711057/1‑93 (MQ=255)
                                                            tGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGataca                       >  1:3200375/1‑93 (MQ=255)
                                                             gCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGatacat                      <  2:677095/93‑1 (MQ=255)
                                                                aaCGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAtacataca                   >  1:2260401/1‑93 (MQ=255)
                                                                aaCGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAtacataca                   >  1:630683/1‑93 (MQ=255)
                                                                 aCGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACaa                  >  2:6515318/1‑93 (MQ=255)
                                                                 aCGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACaa                  <  2:3911811/93‑1 (MQ=255)
                                                                   ggCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAg                >  2:1452534/1‑93 (MQ=255)
                                                                   ggCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAg                >  1:570633/1‑93 (MQ=255)
                                                                    gcgcTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgt               >  1:1234632/1‑93 (MQ=255)
                                                                    gcgcTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgt               <  2:779704/93‑1 (MQ=255)
                                                                      gcTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtgg             >  1:6638038/1‑93 (MQ=255)
                                                                      gcTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtgg             <  1:1375007/93‑1 (MQ=255)
                                                                       cTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtggt            <  1:2734759/93‑1 (MQ=255)
                                                                        tAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtggtg           >  1:3686152/1‑93 (MQ=255)
                                                                        tAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtggtg           <  1:3438275/93‑1 (MQ=255)
                                                                        tAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtggtg           >  1:3381521/1‑93 (MQ=255)
                                                                        caaccTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGCCCAAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtggtg           <  1:2373080/89‑1 (MQ=255)
                                                                         aaaCTGGGCGTATGCTCGCGGTAAAACAACTTTGCTGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGc          >  1:3965085/1‑93 (MQ=255)
                                                                         aaaCTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGc          <  1:1031397/93‑1 (MQ=255)
                                                                            cTGGGCGTCTGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGaa       <  1:4682051/93‑1 (MQ=255)
                                                                            cTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGaa       >  2:3485955/1‑93 (MQ=255)
                                                                            cTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGaa       >  1:2831461/1‑93 (MQ=255)
                                                                              gggCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATg     >  2:374864/1‑93 (MQ=255)
                                                                              gggCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATg     >  1:3317332/1‑93 (MQ=255)
                                                                               ggCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGt    >  1:1647648/1‑93 (MQ=255)
                                                                                gCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTa   <  1:4527796/93‑1 (MQ=255)
                                                                                      ||                                                                                      
TCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAG  >  NC_000913/3972551‑3972724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  >  NC_000913/3972544‑3972726
                                                                                             |                                                                                         
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATG                                                                                           <  SRR4302547.1068879/94‑1 (MQ=60)
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATG                                                                                           >  SRR4302547.5747239/1‑94 (MQ=60)
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATG                                                                                           >  SRR4302547.5496434/1‑94 (MQ=60)
     ACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC                                                                                      <  SRR4302547.2023308/94‑1 (MQ=60)
     ACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC                                                                                      <  SRR4302547.3439998/94‑1 (MQ=60)
      CTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCG                                                                                     >  SRR4302547.1469296/1‑94 (MQ=60)
       TCAATGCGACAGATTCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGG                                                                                    <  SRR4302547.3532804/94‑1 (MQ=60)
       TCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGG                                                                                    >  SRR4302547.3413438/1‑94 (MQ=60)
         AATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTA                                                                                  >  SRR4302547.217263/1‑94 (MQ=60)
          ATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAA                                                                                 >  SRR4302547.3906757/1‑94 (MQ=60)
          ATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAA                                                                                 <  SRR4302547.2857156/94‑1 (MQ=60)
            GCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAA                                                                               >  SRR4302547.2176197/1‑94 (MQ=60)
             CGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAGCTTGGCGTATGCTCGCGGTAAAAC                                                                              <  SRR4302547.5522047/94‑1 (MQ=60)
             CGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAAC                                                                              >  SRR4302547.5052766/1‑94 (MQ=60)
              GACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACA                                                                             >  SRR4302547.5198136/1‑94 (MQ=60)
              GACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACA                                                                             >  SRR4302547.6571904/1‑94 (MQ=60)
              GACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACA                                                                             <  SRR4302547.2347316/94‑1 (MQ=60)
               ACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGGGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAA                                                                            >  SRR4302547.3265351/1‑94 (MQ=60)
                CAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAAC                                                                           <  SRR4302547.3253858/94‑1 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          >  SRR4302547.1298226/1‑94 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          <  SRR4302547.3994461/94‑1 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          <  SRR4302547.829138/94‑1 (MQ=60)
                   ATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTT                                                                        <  SRR4302547.4505034/94‑1 (MQ=60)
                    TGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTG                                                                       <  SRR4302547.6732198/94‑1 (MQ=60)
                    TGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTG                                                                       <  SRR4302547.1967111/94‑1 (MQ=60)
                    TGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTG                                                                       <  SRR4302547.6721324/94‑1 (MQ=60)
                     GCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGC                                                                      <  SRR4302547.4217780/94‑1 (MQ=60)
                      CGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCG                                                                     <  SRR4302547.5596474/94‑1 (MQ=60)
                       GCGAATTGGCCTGCTGGCTGGACGCGGGGCAGGGGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGG                                                                    >  SRR4302547.5376820/1‑94 (MQ=60)
                        CGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGG                                                                   <  SRR4302547.5089433/94‑1 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 <  SRR4302547.2172439/94‑1 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 >  SRR4302547.1771888/1‑94 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 <  SRR4302547.3674122/94‑1 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 <  SRR4302547.1324051/94‑1 (MQ=60)
                           ATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGG                                                                >  SRR4302547.5283587/1‑94 (MQ=60)
                           ATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGG                                                                >  SRR4302547.5989798/1‑94 (MQ=60)
                           ATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGG                                                                <  SRR4302547.6710710/94‑1 (MQ=60)
                            TTGGCCTGCTGGCTCGACGCGGTGCAGGTGCTGAGCTGATGCAAACCGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAAgttttctcgtggc                                                               >  SRR4302547.6521361/1‑81 (MQ=60)
                             TGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCG                                                              >  SRR4302547.4290707/1‑94 (MQ=60)
                              GGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGA                                                             <  SRR4302547.1283652/94‑1 (MQ=60)
                              GGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGA                                                             >  SRR4302547.2804696/1‑94 (MQ=60)
                                CCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACC                                                           <  SRR4302547.2815619/94‑1 (MQ=60)
                                CCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACC                                                           >  SRR4302547.3591287/1‑94 (MQ=60)
                                CCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACC                                                           <  SRR4302547.1506108/94‑1 (MQ=60)
                                 CTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCC                                                          >  SRR4302547.4426558/1‑94 (MQ=60)
                                 CTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCC                                                          >  SRR4302547.389639/1‑94 (MQ=60)
                                 CTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCC                                                          >  SRR4302547.5996492/1‑94 (MQ=60)
                                  TGCTGGCTGGACGCGGTGCAGGTGCTGCGCTGATGCAAACAGCGCTAAACTGGGCGTATGCTCGCGGTACAACAACTTTGCGGGTGGCGACCCA                                                         >  SRR4302547.724701/1‑94 (MQ=60)
                                  TGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCA                                                         <  SRR4302547.6371351/94‑1 (MQ=60)
                                  TGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCA                                                         <  SRR4302547.3129173/94‑1 (MQ=60)
                                   GCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAA                                                        <  SRR4302547.1873234/94‑1 (MQ=60)
                                    CTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAA                                                       <  SRR4302547.3486832/94‑1 (MQ=60)
                                    CTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAA                                                       >  SRR4302547.1618513/1‑94 (MQ=60)
                                      GGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATG                                                     <  SRR4302547.2821650/94‑1 (MQ=60)
                                       GCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGG                                                    <  SRR4302547.2778939/94‑1 (MQ=60)
                                        CTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGG                                                   >  SRR4302547.2723525/1‑94 (MQ=60)
                                        CTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGG                                                   <  SRR4302547.3242560/94‑1 (MQ=60)
                                        CTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGG                                                   >  SRR4302547.5442206/1‑94 (MQ=60)
                                         TGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGC                                                  >  SRR4302547.2062363/1‑94 (MQ=60)
                                         TGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGC                                                  <  SRR4302547.4090050/94‑1 (MQ=60)
                                         TGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGC                                                  >  SRR4302547.670435/1‑94 (MQ=60)
                                          GGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCA                                                 <  SRR4302547.3184745/94‑1 (MQ=60)
                                          GGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCA                                                 >  SRR4302547.2449408/1‑94 (MQ=60)
                                             CGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACA                                              >  SRR4302547.2520749/1‑94 (MQ=60)
                                              GCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAC                                             <  SRR4302547.3116346/94‑1 (MQ=60)
                                              GCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAC                                             >  SRR4302547.4871595/1‑94 (MQ=60)
                                               CGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCTAAATGGGCAACACC                                            <  SRR4302547.6516499/94‑1 (MQ=60)
                                                GGTGCGGGAGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGGATGCTCGCGGTAAAACAACTTTGCCGGAGGCGACCCACATGGGCAACAacc                                           >  SRR4302547.2417420/1‑91 (MQ=60)
                                                 GTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGC                                          <  SRR4302547.6136916/94‑1 (MQ=60)
                                                    CAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGC                                       <  SRR4302547.4466094/94‑1 (MQ=60)
                                                    CAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGC                                       <  SRR4302547.1328332/94‑1 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      <  SRR4302547.4297762/94‑1 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      <  SRR4302547.4655725/94‑1 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      <  SRR4302547.2819613/94‑1 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      <  SRR4302547.1559638/94‑1 (MQ=60)
                                                      GGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGCCCCAAATGGGCAACACCGCCGCGC                                     <  SRR4302547.5356684/94‑1 (MQ=60)
                                                      GGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGC                                     <  SRR4302547.310039/94‑1 (MQ=60)
                                                       GTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCT                                    <  SRR4302547.4001954/94‑1 (MQ=60)
                                                          CTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAA                                 >  SRR4302547.2391237/1‑94 (MQ=60)
                                                           TGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAA                                >  SRR4302547.1555066/1‑94 (MQ=60)
                                                           TGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAA                                >  SRR4302547.3401004/1‑94 (MQ=60)
                                                            GAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAAC                               <  SRR4302547.4287780/94‑1 (MQ=60)
                                                             AGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACG                              <  SRR4302547.5884188/94‑1 (MQ=60)
                                                             AGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACG                              <  SRR4302547.1584139/94‑1 (MQ=60)
                                                               CTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAT                            <  SRR4302547.1622232/94‑1 (MQ=60)
                                                               CTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAT                            <  SRR4302547.3311183/94‑1 (MQ=60)
                                                                TGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATA                           >  SRR4302547.1064232/1‑94 (MQ=60)
                                                                 GATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATAC                          <  SRR4302547.1724074/94‑1 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGTTGTATGAAGGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         <  SRR4302547.3323365/94‑1 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         >  SRR4302547.2765480/1‑94 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         >  SRR4302547.3264185/1‑94 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         <  SRR4302547.3728023/94‑1 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         >  SRR4302547.1443064/1‑94 (MQ=60)
                                                                   TGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACAT                        <  SRR4302547.1882689/94‑1 (MQ=60)
                                                                     CAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATAC                      >  SRR4302547.2004681/1‑94 (MQ=60)
                                                                      AAACGGCTCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACA                     <  SRR4302547.2026345/94‑1 (MQ=60)
                                                                      AAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACA                     >  SRR4302547.2306068/1‑94 (MQ=60)
                                                                      AAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACA                     >  SRR4302547.642336/1‑94 (MQ=60)
                                                                      AAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACA                     <  SRR4302547.3324564/94‑1 (MQ=60)
                                                                       AACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAA                    >  SRR4302547.4494016/1‑94 (MQ=60)
                                                                        ACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAA                   >  SRR4302547.4999393/1‑94 (MQ=60)
                                                                         CGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAG                  >  SRR4302547.580889/1‑94 (MQ=60)
                                                                          GGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGT                 >  SRR4302547.1259541/1‑94 (MQ=60)
                                                                           GCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTG                <  SRR4302547.6706287/94‑1 (MQ=60)
                                                                            CGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGG               >  SRR4302547.6776199/1‑94 (MQ=60)
                                                                             GCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGT              <  SRR4302547.1402578/94‑1 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             >  SRR4302547.3450244/1‑94 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             <  SRR4302547.2789640/94‑1 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             <  SRR4302547.6765345/94‑1 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             >  SRR4302547.3761406/1‑94 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGATTAAACGATACATACAAAGTGGTG             >  SRR4302547.6656297/1‑94 (MQ=60)
                                                                               caacCTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGCCCAAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGC            <  SRR4302547.2421175/90‑1 (MQ=60)
                                                                               TAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCTGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGC            >  SRR4302547.4045731/1‑94 (MQ=60)
                                                                               TAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGC            <  SRR4302547.4784513/94‑1 (MQ=60)
                                                                               TAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGC            <  SRR4302547.3508380/94‑1 (MQ=60)
                                                                                AAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCG           <  SRR4302547.1051673/94‑1 (MQ=60)
                                                                                AAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCG           >  SRR4302547.3948930/1‑94 (MQ=60)
                                                                                AAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCG           >  SRR4302547.510310/1‑94 (MQ=60)
                                                                                 AACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGA          >  SRR4302547.2526158/1‑94 (MQ=60)
                                                                                  ACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAA         >  SRR4302547.2888079/1‑94 (MQ=60)
                                                                                   CTGGGCGTCTGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAAT        <  SRR4302547.4779036/94‑1 (MQ=60)
                                                                                   CTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAAT        >  SRR4302547.2804657/1‑94 (MQ=60)
                                                                                    TGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATG       <  SRR4302547.990765/94‑1 (MQ=60)
                                                                                    TGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATG       >  SRR4302547.3384272/1‑94 (MQ=60)
                                                                                     GGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGT      >  SRR4302547.1680184/1‑94 (MQ=60)
                                                                                      GGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTA     <  SRR4302547.4990349/94‑1 (MQ=60)
                                                                                      GGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTA     <  SRR4302547.3785612/94‑1 (MQ=60)
                                                                                      GGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTA     >  SRR4302547.426814/1‑94 (MQ=60)
                                                                                       GCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAG    <  SRR4302547.5189633/94‑1 (MQ=60)
                                                                                       GCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAG    <  SRR4302547.4621369/94‑1 (MQ=60)
                                                                                        CGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGA   <  SRR4302547.506269/94‑1 (MQ=60)
                                                                                        CGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGA   <  SRR4302547.6026710/94‑1 (MQ=60)
                                                                                        CGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGA   >  SRR4302547.2388506/1‑94 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  >  SRR4302547.2222250/1‑94 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  >  SRR4302547.550647/1‑94 (MQ=60)
                                                                                             |                                                                                         
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  >  NC_000913/3972544‑3972726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑