Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,992,871 |
A→G |
D167G (GAT→GGT) |
dapF → |
diaminopimelate epimerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,992,871 | 0 | A | G | 89.6%
| 663.2
/ 56.9
| 230 | D167G (GAT→GGT) | dapF | diaminopimelate epimerase |
| Reads supporting (aligned to +/- strand): ref base A (10/14); new base G (97/109); total (107/123) |
| Fisher's exact test for biased strand distribution p-value = 6.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01 |
Only 100 of 255 total aligned reads displayed.
GAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTGG > NC_000913/3992780‑3992963
|
aaaGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGgtgt < 1:3957518/93‑1 (MQ=255)
aaaGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGgtgt < 1:1389704/93‑1 (MQ=255)
aaaGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGt > 1:1464121/1‑93 (MQ=255)
aaGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTc < 1:1801705/93‑1 (MQ=255)
aaGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTc > 1:309361/1‑93 (MQ=255)
gACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGa > 1:6263676/1‑93 (MQ=255)
ccTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATa > 2:963723/1‑93 (MQ=255)
cTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATAc < 2:6216454/93‑1 (MQ=255)
cTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATAc < 1:530570/93‑1 (MQ=255)
cTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATAc < 2:3985247/93‑1 (MQ=255)
tataTTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATAcc > 2:4503711/1‑93 (MQ=255)
atatTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACcg > 1:2466096/1‑93 (MQ=255)
tattatGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACcgc > 1:1564753/1‑93 (MQ=255)
attatGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACcgcg < 2:5689610/93‑1 (MQ=255)
attatGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACcgcg > 1:6292161/1‑93 (MQ=255)
ttatGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCgcgg > 2:4585930/1‑93 (MQ=255)
ttatGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCgcgg > 1:6634033/1‑93 (MQ=255)
tatGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCgcggc > 2:2535164/1‑93 (MQ=255)
atGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGCTGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCgcggcg > 2:4673516/1‑93 (MQ=255)
tGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGcggcgg < 2:6546703/93‑1 (MQ=255)
tGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGcggcgg > 2:3176967/1‑93 (MQ=255)
gcgcgcCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGt > 1:6327884/1‑93 (MQ=255)
cgcgcCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTa < 1:5537453/93‑1 (MQ=255)
gcgcCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAg > 1:3422923/1‑93 (MQ=255)
cgccgcCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGa < 2:5746390/93‑1 (MQ=255)
gccgccGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGaa > 2:443310/1‑93 (MQ=255)
ccgccgAGCAGACAATCTTATGCGGCGTGGTGTCGATTGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGaaa < 1:4439640/93‑1 (MQ=255)
ccgccgAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGaaa < 2:5191851/93‑1 (MQ=255)
ccgccgAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGaaa > 1:4714664/1‑93 (MQ=255)
gccgAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACg > 1:3487916/1‑93 (MQ=255)
ccgAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGc < 1:4345028/93‑1 (MQ=255)
ccgAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGc > 1:5120666/1‑93 (MQ=255)
cgAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCt < 2:23768/93‑1 (MQ=255)
cgAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCt > 2:3622131/1‑93 (MQ=255)
gAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCtt > 2:1369896/1‑93 (MQ=255)
gAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCtt > 2:616184/1‑93 (MQ=255)
aGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTg < 1:4527705/93‑1 (MQ=255)
aGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTg < 2:2030615/93‑1 (MQ=255)
aGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTg < 1:372146/93‑1 (MQ=255)
aGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTg > 1:3179412/1‑93 (MQ=255)
gCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAATGCTTgg > 1:2164076/1‑93 (MQ=255)
gCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTgg > 2:3253312/1‑93 (MQ=255)
gCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTgg < 1:2283983/93‑1 (MQ=255)
gCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTgg > 1:2072209/1‑93 (MQ=255)
cAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGt > 1:3401523/1‑93 (MQ=255)
aGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTc < 1:6003922/93‑1 (MQ=255)
aGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTc < 2:433351/93‑1 (MQ=255)
gACAATCTTATGCGGCGTGGTGTCGATGGTAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTcc < 2:4827289/93‑1 (MQ=255)
gACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTcc < 2:1598088/93‑1 (MQ=255)
gACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTcc > 1:3751022/1‑93 (MQ=255)
aCAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCt > 1:1188365/1‑93 (MQ=255)
aCAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCt < 2:6349404/93‑1 (MQ=255)
aCAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCt < 2:1700116/93‑1 (MQ=255)
aaTCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGt > 2:5905592/1‑93 (MQ=255)
aTCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGtt < 2:2318044/93‑1 (MQ=255)
aTCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGtt > 1:3027330/1‑93 (MQ=255)
tCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTc < 2:3479281/93‑1 (MQ=255)
ttATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGGCCTGTTCTg < 2:2754725/93‑1 (MQ=255)
gcggcgTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGaaa < 2:4679089/93‑1 (MQ=255)
ggggtggtgTCGATGGAAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGc < 2:1210261/90‑1 (MQ=255)
gcgTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGcc > 1:1305012/1‑93 (MQ=255)
gcgTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGcc > 1:5393863/1‑93 (MQ=255)
cgTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCa < 1:783784/93‑1 (MQ=255)
gtggtgTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCAc > 1:2555931/1‑93 (MQ=255)
gtggtgTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCAc < 1:4986611/93‑1 (MQ=255)
gATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGttt > 1:4037347/1‑93 (MQ=255)
aTGGGAAATCCGCATTGCGTGATTCATGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGtttt < 2:5457932/93‑1 (MQ=255)
tGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTc > 1:3843464/1‑93 (MQ=255)
gggAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTcc < 1:1072948/93‑1 (MQ=255)
gggAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTcc > 1:5771868/1‑93 (MQ=255)
gAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGAGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCgg > 2:4310828/1‑93 (MQ=255)
aaaTCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGa < 1:4478883/93‑1 (MQ=255)
aaTCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAg > 2:1822931/1‑93 (MQ=255)
tCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAgcg < 2:5409593/93‑1 (MQ=255)
tCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAgcg > 2:400358/1‑93 (MQ=255)
ccGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCGCGAGCGTTTTCCGGAgcgc < 1:6441863/93‑1 (MQ=255)
ccGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAgcgc < 1:2719320/93‑1 (MQ=255)
ccGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAgcgc < 2:3015095/93‑1 (MQ=255)
gCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAgcgcgc < 1:4096883/93‑1 (MQ=255)
cATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGcc > 2:3381062/1‑93 (MQ=255)
aTTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCa < 2:4256021/93‑1 (MQ=255)
ttGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCaa < 2:5144486/93‑1 (MQ=255)
ttGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCaa < 2:3745108/93‑1 (MQ=255)
gTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATc < 2:6081631/93‑1 (MQ=255)
aTTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGt > 1:1834747/1‑93 (MQ=255)
ttCAGGTCTATGGTGTCGATCCCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCTGtt < 1:3588032/93‑1 (MQ=255)
cAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGtttt < 1:4207974/93‑1 (MQ=255)
cAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGtttt > 1:4758665/1‑93 (MQ=255)
aGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTa < 2:2429966/93‑1 (MQ=255)
ggTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTAt < 2:5831448/93‑1 (MQ=255)
ggTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTAt < 2:3864396/93‑1 (MQ=255)
tCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGc > 2:1568987/1‑93 (MQ=255)
cGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCa < 1:6082847/93‑1 (MQ=255)
gatgatGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGAGCGCCAATATCGGTTTTATGCaa > 2:4052005/1‑93 (MQ=255)
atggtgTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAg > 2:2165065/1‑93 (MQ=255)
atggtgTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAg > 1:2206783/1‑93 (MQ=255)
atggtgTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAg < 2:4973348/93‑1 (MQ=255)
atgatgTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAg < 1:173675/93‑1 (MQ=255)
atgatgTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAg < 1:1681066/93‑1 (MQ=255)
atgTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTgg > 2:2578691/1‑93 (MQ=255)
|
GAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTGG > NC_000913/3992780‑3992963
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTGGT > NC_000913/3992778‑3992964
|
CGGAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGG > SRR4302547.6204304/1‑94 (MQ=60)
GGAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCATGTCGATGAT > SRR4302547.3731252/1‑94 (MQ=60)
GGAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGT < SRR4302547.6515124/94‑1 (MQ=60)
GGAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGT > SRR4302547.6537489/1‑94 (MQ=60)
AAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGT > SRR4302547.1493372/1‑94 (MQ=60)
AAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTC > SRR4302547.315120/1‑94 (MQ=60)
AAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTC < SRR4302547.4038019/94‑1 (MQ=60)
AAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTC < SRR4302547.1859028/94‑1 (MQ=60)
AAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTC < SRR4302547.1417519/94‑1 (MQ=60)
AAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCG > SRR4302547.4887884/1‑94 (MQ=60)
AAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCG < SRR4302547.5606504/94‑1 (MQ=60)
AAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCA < SRR4302547.1837339/94‑1 (MQ=60)
AGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGA > SRR4302547.6393794/1‑94 (MQ=60)
AGACCTATACTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGA > SRR4302547.12573/1‑94 (MQ=60)
GACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGAT > SRR4302547.3719427/1‑94 (MQ=60)
CTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACC < SRR4302547.540152/94‑1 (MQ=60)
TATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCG < SRR4302547.4543477/94‑1 (MQ=60)
TATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCG > SRR4302547.2515937/1‑94 (MQ=60)
TATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCG > SRR4302547.2089865/1‑94 (MQ=60)
TATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATAACG > SRR4302547.6059211/1‑94 (MQ=60)
ATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGC > SRR4302547.1595923/1‑94 (MQ=60)
TATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCG > SRR4302547.2027968/1‑94 (MQ=60)
TATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCG < SRR4302547.6486301/94‑1 (MQ=60)
TATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCG > SRR4302547.5465092/1‑94 (MQ=60)
TATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCG > SRR4302547.6422948/1‑94 (MQ=60)
ATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGG > SRR4302547.6772124/1‑94 (MQ=60)
TTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGC < SRR4302547.1467109/94‑1 (MQ=60)
TTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGCGATTCAGGTCGATCGTGTCGATACGGCGGC > SRR4302547.2973288/1‑94 (MQ=60)
TATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCG > SRR4302547.1814200/1‑94 (MQ=60)
TATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCG < SRR4302547.5740716/94‑1 (MQ=60)
TGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGT < SRR4302547.4841556/94‑1 (MQ=60)
TGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGT > SRR4302547.6459486/1‑94 (MQ=60)
GCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTA < SRR4302547.4976500/94‑1 (MQ=60)
GCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTA < SRR4302547.3414257/94‑1 (MQ=60)
CGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAG < SRR4302547.5651748/94‑1 (MQ=60)
CGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAG > SRR4302547.3492617/1‑94 (MQ=60)
CGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAG > SRR4302547.4382476/1‑94 (MQ=60)
CGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAG < SRR4302547.227654/94‑1 (MQ=60)
GCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGA < SRR4302547.2188091/94‑1 (MQ=60)
CGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAA > SRR4302547.4130516/1‑94 (MQ=60)
GCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAA > SRR4302547.4812270/1‑94 (MQ=60)
CCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATTGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAAC < SRR4302547.4531442/94‑1 (MQ=60)
CGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACG < SRR4302547.3911814/94‑1 (MQ=60)
CGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACG > SRR4302547.227222/1‑94 (MQ=60)
CGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACG > SRR4302547.3559082/1‑94 (MQ=60)
GCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGC < SRR4302547.5335570/94‑1 (MQ=60)
GCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGC > SRR4302547.234410/1‑94 (MQ=60)
GCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGC > SRR4302547.5226168/1‑94 (MQ=60)
GCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGC > SRR4302547.2535890/1‑94 (MQ=60)
CCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCT < SRR4302547.4434348/94‑1 (MQ=60)
CGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTT < SRR4302547.3121570/94‑1 (MQ=60)
CGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTT > SRR4302547.6160223/1‑94 (MQ=60)
CGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGGGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTT < SRR4302547.4249789/94‑1 (MQ=60)
GAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTG < SRR4302547.3972760/94‑1 (MQ=60)
GAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTG > SRR4302547.3242756/1‑94 (MQ=60)
GAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTG > SRR4302547.4086089/1‑94 (MQ=60)
AGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAATGCTTGG > SRR4302547.2207348/1‑94 (MQ=60)
AGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGG > SRR4302547.2113562/1‑94 (MQ=60)
AGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGG < SRR4302547.2210397/94‑1 (MQ=60)
AGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGG < SRR4302547.4621275/94‑1 (MQ=60)
AGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGG < SRR4302547.379041/94‑1 (MQ=60)
GCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGT > SRR4302547.3470743/1‑94 (MQ=60)
GCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGT < SRR4302547.2330223/94‑1 (MQ=60)
GCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGT < SRR4302547.4541589/94‑1 (MQ=60)
CAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTC > SRR4302547.2649910/1‑94 (MQ=60)
AGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCC < SRR4302547.6128521/94‑1 (MQ=60)
AGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCC > SRR4302547.6418865/1‑94 (MQ=60)
AGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCC > SRR4302547.3827579/1‑94 (MQ=60)
GACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCT > SRR4302547.930815/1‑94 (MQ=60)
GACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCT > SRR4302547.3517087/1‑94 (MQ=60)
GACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCT > SRR4302547.1212359/1‑94 (MQ=60)
ACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTG > SRR4302547.1465616/1‑94 (MQ=60)
ACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTG > SRR4302547.6429637/1‑94 (MQ=60)
CAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGT > SRR4302547.4055967/1‑94 (MQ=60)
AATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTT > SRR4302547.3087523/1‑94 (MQ=60)
ATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTC < SRR4302547.3404707/94‑1 (MQ=60)
TCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCT > SRR4302547.4809417/1‑94 (MQ=60)
TCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCT < SRR4302547.170279/94‑1 (MQ=60)
TTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGG < SRR4302547.2893960/94‑1 (MQ=60)
GGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCC > SRR4302547.3601331/1‑94 (MQ=60)
GGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCC > SRR4302547.1331266/1‑94 (MQ=60)
GGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCC > SRR4302547.5505291/1‑94 (MQ=60)
GCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCA > SRR4302547.6400827/1‑94 (MQ=60)
CGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCAC > SRR4302547.3077068/1‑94 (MQ=60)
CGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCAC < SRR4302547.4240417/94‑1 (MQ=60)
CGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCAC > SRR4302547.2607546/1‑94 (MQ=60)
CGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCAC < SRR4302547.798600/94‑1 (MQ=60)
GTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACG > SRR4302547.4486042/1‑94 (MQ=60)
GTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACG < SRR4302547.3236637/94‑1 (MQ=60)
GTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACG < SRR4302547.5089714/94‑1 (MQ=60)
TGGTGTCGATGTGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGA < SRR4302547.4579434/94‑1 (MQ=60)
TGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGA < SRR4302547.1387026/94‑1 (MQ=60)
TGGGGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGGGTGGATACCGCGGCGGGAGAAACGCTTTGTCCTGTTCTGGgaagtcccta > SRR4302547.6790257/1‑84 (MQ=60)
TCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTT < SRR4302547.6534115/94‑1 (MQ=60)
CGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTT > SRR4302547.4119323/1‑94 (MQ=60)
GATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTT > SRR4302547.770310/1‑94 (MQ=60)
ATGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTC > SRR4302547.1222605/1‑94 (MQ=60)
ATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTC > SRR4302547.3921727/1‑94 (MQ=60)
TGGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCC > SRR4302547.5891244/1‑94 (MQ=60)
GGGAAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCG < SRR4302547.1094333/94‑1 (MQ=60)
AAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAG < SRR4302547.4706701/94‑1 (MQ=60)
AAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAG < SRR4302547.2192929/94‑1 (MQ=60)
AAATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAG < SRR4302547.4571409/94‑1 (MQ=60)
AATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGC > SRR4302547.5182206/1‑94 (MQ=60)
ATCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCG < SRR4302547.1504108/94‑1 (MQ=60)
TCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGC > SRR4302547.714524/1‑94 (MQ=60)
TCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGC < SRR4302547.2549436/94‑1 (MQ=60)
TCCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGCAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGC > SRR4302547.3236450/1‑94 (MQ=60)
CCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCGCGAGCGTTTTCCGGAGCGCG < SRR4302547.6576114/94‑1 (MQ=60)
CCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCG < SRR4302547.1757253/94‑1 (MQ=60)
CCGCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCG < SRR4302547.2773920/94‑1 (MQ=60)
GCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCC < SRR4302547.4180194/94‑1 (MQ=60)
GCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCC > SRR4302547.1771172/1‑94 (MQ=60)
GCATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCC < SRR4302547.3876069/94‑1 (MQ=60)
ATTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAA > SRR4302547.6197120/1‑94 (MQ=60)
TTGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAAT < SRR4302547.3475899/94‑1 (MQ=60)
TGCGTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATA < SRR4302547.6354925/94‑1 (MQ=60)
GTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCG < SRR4302547.118346/94‑1 (MQ=60)
GTGATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGACAATATCG < SRR4302547.2282379/94‑1 (MQ=60)
GATTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGT > SRR4302547.1871020/1‑94 (MQ=60)
GTTCAGGTCGATGATGTCGATCCCGCGGCGGTAGAAACGCTTGGGCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAgtttgtgtt < SRR4302547.3557460/94‑10 (MQ=60)
TTCAGGTCTATGGTGTCGATCCCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCTGTTT < SRR4302547.3661227/94‑1 (MQ=60)
TTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTT < SRR4302547.6770694/94‑1 (MQ=60)
TTCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTT < SRR4302547.5722059/94‑1 (MQ=60)
TCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTT < SRR4302547.5501666/94‑1 (MQ=60)
TCAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTT > SRR4302547.4857262/1‑94 (MQ=60)
CAGGTCGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTA < SRR4302547.4293846/94‑1 (MQ=60)
TCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCA > SRR4302547.1690572/1‑94 (MQ=60)
CGATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAA < SRR4302547.6209048/94‑1 (MQ=60)
GATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAG > SRR4302547.2251135/1‑94 (MQ=60)
GATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAG < SRR4302547.3532194/94‑1 (MQ=60)
GATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAG > SRR4302547.4387358/1‑94 (MQ=60)
ATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGT < SRR4302547.3822062/94‑1 (MQ=60)
ATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGT > SRR4302547.725312/1‑94 (MQ=60)
ATGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGT > SRR4302547.5649633/1‑94 (MQ=60)
ATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGT < SRR4302547.176855/94‑1 (MQ=60)
ATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGT < SRR4302547.1714161/94‑1 (MQ=60)
TGGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTG < SRR4302547.3322190/94‑1 (MQ=60)
TGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGTCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTG > SRR4302547.5240844/1‑94 (MQ=60)
GGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTGG < SRR4302547.3877862/94‑1 (MQ=60)
GGTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTGG > SRR4302547.5674277/1‑94 (MQ=60)
GTGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTGGT > SRR4302547.535080/1‑94 (MQ=60)
|
CGGAAAAGACCTATATTATGCGCGCCGCCGAGCAGACAATCTTATGCGGCGTGGTGTCGATGGGAAATCCGCATTGCGTGATTCAGGTCGATGATGTCGATACCGCGGCGGTAGAAACGCTTGGTCCTGTTCTGGAAAGCCACGAGCGTTTTCCGGAGCGCGCCAATATCGGTTTTATGCAAGTGGT > NC_000913/3992778‑3992964
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
