Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,057,759 |
+C |
coding (1773/1776 nt) |
yihK → |
putative GTP‑binding factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,057,758 | 1 | . | C | 99.7%
| 1113.1
/ ‑3.8
| 296 | coding (1772/1776 nt) | yihK | putative GTP‑binding factor |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (146/149); total (146/150) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
Only 100 of 322 total aligned reads displayed.
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑Ca > 2:2617111/1‑93 (MQ=255)
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑Ca > 1:4102785/1‑93 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cc > 1:3933020/1‑92 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cc > 1:3298034/1‑92 (MQ=255)
ccGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cct < 2:832929/93‑3 (MQ=255)
ccGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cct < 1:2211240/93‑3 (MQ=255)
cGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cctg > 2:5882874/1‑90 (MQ=255)
cGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cctg > 1:2880828/1‑90 (MQ=255)
gCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cctga < 2:232452/93‑5 (MQ=255)
aTGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACg > 2:2997027/1‑93 (MQ=255)
gACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGa > 1:1293358/1‑93 (MQ=255)
aCTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGaa > 2:1800860/1‑93 (MQ=255)
aCTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGaa > 2:4199817/1‑93 (MQ=255)
ctctGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGaaa > 2:6219199/1‑93 (MQ=255)
tctGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGaaaa < 1:1040307/93‑1 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGa < 1:6648542/93‑1 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGa < 2:465943/93‑1 (MQ=255)
gAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAt < 1:6178345/93‑1 (MQ=255)
aCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcg < 1:3965955/93‑1 (MQ=255)
cAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgt > 2:6345559/1‑93 (MQ=255)
cAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgt < 1:213346/93‑1 (MQ=255)
aatctctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtc < 1:224108/90‑1 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtc < 2:1521636/93‑1 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtc < 2:3550074/93‑1 (MQ=255)
aGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtcg > 2:1889426/1‑93 (MQ=255)
aGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtcg > 2:4337438/1‑93 (MQ=255)
gCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTcgc > 2:2681337/1‑93 (MQ=255)
ctctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTcgcc < 2:1358294/93‑1 (MQ=255)
tGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCcgcg > 2:2119427/1‑93 (MQ=255)
tGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCcgcg > 2:5391913/1‑93 (MQ=255)
tgAGTTCAACGATGATGAAGAACTGGTAGAAGTGACTCCGACCTCTATACGTATTCGTAACCGT‑CACCTGACGGAAAACGATCGTCGCCgcgc < 2:3233480/92‑1 (MQ=255)
ggAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCgcgc < 1:3023418/93‑1 (MQ=255)
ggAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCgcgc > 1:1447527/1‑93 (MQ=255)
gAGTTCATCGAGGATGACGAGCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGcc < 2:4585181/93‑1 (MQ=255)
gTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCaa > 1:2547563/1‑93 (MQ=255)
gTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCaa > 2:1461129/1‑93 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCCC‑CTGACGGAAAACGATCGTCGCCGCGCCAAc < 1:5866231/93‑1 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAc > 2:3192726/1‑93 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAc < 1:5823371/93‑1 (MQ=255)
cATCGATGATGACGAACTTGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACcg < 1:3263382/93‑1 (MQ=255)
cGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCgcgc < 2:103620/93‑1 (MQ=255)
atgatgACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAc > 2:1611997/1‑93 (MQ=255)
atgatgACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAc < 2:574085/93‑1 (MQ=255)
tgatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAcc < 2:4962223/93‑1 (MQ=255)
agatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAcc < 2:5225953/92‑1 (MQ=255)
atgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGa > 1:8086/1‑93 (MQ=255)
atgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGa > 1:1588629/1‑93 (MQ=255)
tgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaa > 1:6512239/1‑93 (MQ=255)
gaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaaa < 1:2009750/93‑1 (MQ=255)
aCGAACTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAg < 1:5696043/93‑1 (MQ=255)
cGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGa < 2:3583222/93‑1 (MQ=255)
cGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGa < 2:6449155/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc > 1:6055033/1‑93 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACg < 2:2241236/93‑1 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACg > 1:1100408/1‑93 (MQ=255)
aCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGa < 1:3097839/93‑1 (MQ=255)
cTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAt < 2:2477051/93‑1 (MQ=255)
aGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAtt < 2:3432404/93‑1 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt > 2:5478151/1‑93 (MQ=255)
aaGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTc < 1:98195/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 2:1273716/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 2:4021717/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 2:1157901/93‑1 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt < 1:3130340/93‑1 (MQ=255)
cTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt < 2:3720655/93‑1 (MQ=255)
cTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt > 2:1383887/1‑93 (MQ=255)
cTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt < 2:5650517/93‑1 (MQ=255)
tCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttttt > 1:4026364/1‑93 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa > 2:3404617/1‑93 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa > 2:5135330/1‑93 (MQ=255)
gACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGt > 2:6619606/1‑93 (MQ=255)
aCCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc > 2:4443508/1‑93 (MQ=255)
aCCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACAGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc > 1:3215261/1‑93 (MQ=255)
ccTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCa > 2:6023992/1‑93 (MQ=255)
ccTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCa > 2:6153301/1‑93 (MQ=255)
tctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATa > 1:4889157/1‑93 (MQ=255)
tctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATa < 1:6237011/93‑1 (MQ=255)
ttATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaa < 2:4108684/92‑1 (MQ=255)
aTCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaa > 1:3653845/1‑93 (MQ=255)
aTCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaa > 2:3839641/1‑93 (MQ=255)
tCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa > 1:5147271/1‑93 (MQ=255)
tCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa < 1:5404143/93‑1 (MQ=255)
tCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGACATaaaaa > 1:4472142/1‑93 (MQ=255)
ccGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaaa < 1:2726891/93‑1 (MQ=255)
cGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc < 1:870193/93‑1 (MQ=255)
cGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc > 2:1232915/1‑93 (MQ=255)
gTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc > 2:5861870/1‑93 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAACACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt < 2:4868026/93‑1 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt > 2:5526960/1‑93 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt < 1:5350181/93‑1 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt < 1:3543126/93‑1 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt < 1:4963696/93‑1 (MQ=255)
cGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCa < 1:2465645/93‑1 (MQ=255)
gTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAg > 1:4707642/1‑93 (MQ=255)
tAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGc > 1:5222720/1‑93 (MQ=255)
aaaCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCTTTTTTTAGTCATAAAAAACCTGCCAGCg > 2:6565131/1‑93 (MQ=255)
aCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAt > 1:3734187/1‑93 (MQ=255)
aCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAt < 1:1156663/93‑1 (MQ=255)
cGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATg > 1:3854817/1‑93 (MQ=255)
cGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATg < 2:685290/93‑1 (MQ=255)
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057667‑4057852
|
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CC < SRR4302547.3569443/94‑1 (MQ=60)
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CC > SRR4302547.1092964/1‑94 (MQ=60)
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CC > SRR4302547.3364394/1‑94 (MQ=60)
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CC > SRR4302547.4013012/1‑94 (MQ=60)
TCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cct < SRR4302547.366800/94‑3 (MQ=60)
CCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cctg < SRR4302547.2255706/94‑4 (MQ=60)
CCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cctg < SRR4302547.6332758/94‑4 (MQ=60)
CCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cctg > SRR4302547.2938327/1‑91 (MQ=60)
GCATGTCTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGAC > SRR4302547.5325152/1‑94 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACG < SRR4302547.6477791/94‑1 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACG > SRR4302547.2537657/1‑94 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGG < SRR4302547.3321636/94‑1 (MQ=60)
TGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGA > SRR4302547.1319385/1‑94 (MQ=60)
TGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGA > SRR4302547.5484826/1‑94 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAA < SRR4302547.3333547/94‑1 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAA > SRR4302547.3176016/1‑94 (MQ=60)
CTCTGGAGCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAA < SRR4302547.3050261/94‑1 (MQ=60)
TCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAAC < SRR4302547.2272393/94‑1 (MQ=60)
TCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAAC > SRR4302547.6753158/1‑94 (MQ=60)
TCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAAC < SRR4302547.1060809/94‑1 (MQ=60)
TCTGAAGCAACCTCTGGAGTTCATCGTTGATGACGACTTGGTAGAAGTGACTCTGTCCTCTATCCGTATTCGTAAACGT‑CACCTGACAGAAAAC < SRR4302547.3554850/94‑1 (MQ=46)
CTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACG > SRR4302547.4189167/1‑94 (MQ=60)
TGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGA > SRR4302547.3761611/1‑94 (MQ=60)
TGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGA > SRR4302547.409578/1‑94 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAT < SRR4302547.2070912/94‑1 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAT < SRR4302547.6787037/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATC < SRR4302547.6306582/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATC < SRR4302547.6069704/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATC < SRR4302547.3291933/94‑1 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCG > SRR4302547.5184973/1‑94 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCG > SRR4302547.1402242/1‑94 (MQ=60)
ACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGT < SRR4302547.4046610/94‑1 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTC > SRR4302547.2482740/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTC > SRR4302547.2469694/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTC < SRR4302547.4132230/94‑1 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTC < SRR4302547.217371/94‑1 (MQ=60)
AATCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCG < SRR4302547.228325/94‑1 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCG < SRR4302547.581230/94‑1 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGC > SRR4302547.4017393/1‑94 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGC < SRR4302547.6349681/94‑1 (MQ=60)
GCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCC < SRR4302547.2111738/94‑1 (MQ=60)
GCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCC < SRR4302547.5679558/94‑1 (MQ=60)
TCTGGAGTTCATCGATGATGACGACCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGC < SRR4302547.3349303/94‑1 (MQ=60)
TCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGC < SRR4302547.4503979/94‑1 (MQ=60)
TGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGC > SRR4302547.1476477/1‑94 (MQ=60)
GGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCC < SRR4302547.3083536/94‑1 (MQ=60)
GAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCA > SRR4302547.2965249/1‑94 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAA > SRR4302547.5872699/1‑94 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAA > SRR4302547.2599009/1‑94 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAC > SRR4302547.1264280/1‑94 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAC > SRR4302547.3908456/1‑94 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCCC‑CTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302547.5987648/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACC > SRR4302547.4885487/1‑94 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302547.132274/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302547.5943877/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302547.5127559/94‑1 (MQ=60)
TCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCG < SRR4302547.792625/94‑1 (MQ=60)
CATCGATGATGACGAACTTGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGC < SRR4302547.3328655/94‑1 (MQ=60)
CATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGC < SRR4302547.312126/94‑1 (MQ=60)
CATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGC > SRR4302547.3353570/1‑94 (MQ=60)
ATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCG < SRR4302547.6298085/94‑1 (MQ=60)
TCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGC < SRR4302547.5978457/94‑1 (MQ=60)
ATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACC > SRR4302547.3976745/1‑94 (MQ=60)
GATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGA > SRR4302547.1620196/1‑94 (MQ=60)
GATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGA > SRR4302547.8238/1‑94 (MQ=60)
GATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGA > SRR4302547.778720/1‑94 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAA > SRR4302547.6647820/1‑94 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAA < SRR4302547.4999080/94‑1 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAA < SRR4302547.2668833/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302547.2049744/94‑1 (MQ=60)
ACGAACTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGA < SRR4302547.5813697/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC > SRR4302547.6180640/1‑94 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC < SRR4302547.92365/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC > SRR4302547.629233/1‑94 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG < SRR4302547.2431789/94‑1 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG < SRR4302547.1490332/94‑1 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG < SRR4302547.924353/94‑1 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG > SRR4302547.1122514/1‑94 (MQ=60)
AACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGA > SRR4302547.5409027/1‑94 (MQ=60)
ACTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302547.290076/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302547.5496442/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302547.3159216/94‑1 (MQ=60)
CTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT < SRR4302547.2203964/94‑1 (MQ=60)
CTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT > SRR4302547.3185703/1‑94 (MQ=60)
CTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT > SRR4302547.1004687/1‑94 (MQ=60)
TGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTA < SRR4302547.3974464/94‑1 (MQ=60)
TGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTA < SRR4302547.1727125/94‑1 (MQ=60)
GGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAA > SRR4302547.2043799/1‑94 (MQ=60)
TAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT < SRR4302547.5807689/94‑1 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT < SRR4302547.325779/94‑1 (MQ=60)
AAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCG > SRR4302547.5025148/1‑94 (MQ=60)
AAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCG < SRR4302547.100012/94‑1 (MQ=60)
AAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCG > SRR4302547.1602420/1‑94 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT < SRR4302547.3661539/94‑1 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT > SRR4302547.1553944/1‑94 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302547.413535/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302547.5403764/94‑1 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAACCGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT < SRR4302547.48375/94‑1 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAGCCGCGCACCGAAAGACGATTAATTTCGTTTT < SRR4302547.4580744/94‑1 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTACACGT‑CACCTGACGGACAACGATCGTCACCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT > SRR4302547.1127638/1‑94 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT > SRR4302547.4062778/1‑94 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT < SRR4302547.3192469/94‑1 (MQ=60)
cccccaacctttttccgtatcagtaaccgtcacCTGACGAAAAACGATCGTCGCCGCGCCACCCGCGCACCGAAAGACGATTAATTTCGTTTTT < SRR4302547.3073145/61‑1 (MQ=60)
CTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTT > SRR4302547.4108165/1‑94 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302547.1130043/94‑1 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302547.5197040/1‑94 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302547.961075/1‑94 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302547.4041600/1‑94 (MQ=60)
CGACCTCTATCCGTATTCGGAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGTACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302547.4041601/1‑94 (MQ=60)
GACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACAGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTC > SRR4302547.3279397/1‑94 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA > SRR4302547.4990421/1‑94 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA > SRR4302547.3811977/1‑94 (MQ=60)
TCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAA > SRR4302547.2918565/1‑94 (MQ=60)
TCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAA < SRR4302547.6366587/94‑1 (MQ=60)
TCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAA > SRR4302547.6437455/1‑94 (MQ=60)
TCTATCCGTATTCGAAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAA < SRR4302547.3088433/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAACGACGGTTGATTTCGTTTTTTAGTCATAAA > SRR4302547.2261387/1‑94 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA < SRR4302547.527288/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302547.4643237/1‑94 (MQ=60)
TATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAA > SRR4302547.3728379/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGACAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302547.5837155/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302547.5253279/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302547.6574779/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGACATAAAAA > SRR4302547.4564546/1‑94 (MQ=60)
TCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAA < SRR4302547.5515847/94‑1 (MQ=60)
TCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAA > SRR4302547.6170402/1‑94 (MQ=60)
CCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAC < SRR4302547.2781637/94‑1 (MQ=60)
CGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302547.886873/94‑1 (MQ=60)
CGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302547.834303/94‑1 (MQ=60)
CGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302547.5944562/94‑1 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302547.125359/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302547.5460506/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302547.5066412/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302547.3615448/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG > SRR4302547.3268360/1‑94 (MQ=60)
ATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC > SRR4302547.2212246/1‑94 (MQ=60)
ATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC < SRR4302547.2692614/94‑1 (MQ=60)
TTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCC < SRR4302547.5317500/94‑1 (MQ=60)
TCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCA < SRR4302547.63280/94‑1 (MQ=60)
CGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAG < SRR4302547.2515473/94‑1 (MQ=60)
CGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAG > SRR4302547.4805129/1‑94 (MQ=60)
CGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAG < SRR4302547.4504899/94‑1 (MQ=60)
GTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGC < SRR4302547.3743845/94‑1 (MQ=60)
GTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGC > SRR4302547.5330192/1‑94 (MQ=60)
AAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA < SRR4302547.2529670/94‑1 (MQ=60)
AACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAT > SRR4302547.3810431/1‑94 (MQ=60)
AACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAT > SRR4302547.301578/1‑94 (MQ=60)
AACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAA > SRR4302547.3869746/1‑94 (MQ=60)
ACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG < SRR4302547.111716/94‑1 (MQ=60)
ACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG < SRR4302547.1180056/94‑1 (MQ=60)
ACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG < SRR4302547.6750198/94‑1 (MQ=60)
ACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > SRR4302547.3933283/1‑94 (MQ=60)
CGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG > SRR4302547.2031291/1‑94 (MQ=60)
cgtctcCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG < SRR4302547.2367190/88‑1 (MQ=60)
GT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC > SRR4302547.5461665/1‑94 (MQ=60)
GT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC < SRR4302547.2825244/94‑1 (MQ=60)
T‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA < SRR4302547.764035/94‑1 (MQ=60)
T‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA > SRR4302547.1757454/1‑94 (MQ=60)
T‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA < SRR4302547.3816822/94‑1 (MQ=60)
T‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA < SRR4302547.3432075/94‑1 (MQ=60)
T‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA > SRR4302547.46642/1‑94 (MQ=60)
C‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGT > SRR4302547.3854901/1‑94 (MQ=60)
CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT < SRR4302547.6023564/94‑1 (MQ=60)
|
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057667‑4057852
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
