Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,103,519 |
+T |
intergenic (‑268/‑530) |
cpxR ← / → yiiP |
transcriptional regulator in 2‑component system/putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,103,519 | 1 | . | T | 99.5%
| 796.9
/ ‑4.0
| 207 | intergenic (‑268/‑530) | cpxR/yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (84/122); total (85/122) |
| Fisher's exact test for biased strand distribution p-value = 4.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 251 total aligned reads displayed.
GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑ACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGA > NC_000913/4103427‑4103605
|
ggCCTCAACGCTGGCAGTCAGTTCATTAAGCGACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑g < 2:4430895/93‑1 (MQ=255)
tCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑gtacg > 1:834030/1‑89 (MQ=255)
tCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑gtacg > 2:4932458/1‑89 (MQ=255)
aaCGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgca > 1:1685684/1‑93 (MQ=255)
aCGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcag > 2:2219247/1‑93 (MQ=255)
aCGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcag > 1:2742568/1‑93 (MQ=255)
aCGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcag > 2:1754819/1‑93 (MQ=255)
cGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcaga > 2:2052382/1‑93 (MQ=255)
cGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcaga > 2:2818489/1‑93 (MQ=255)
cGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcaga < 1:309759/93‑1 (MQ=255)
cTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGc < 2:2238044/93‑1 (MQ=255)
tGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGcc < 2:225116/93‑1 (MQ=255)
tGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGcc < 1:4414060/93‑1 (MQ=255)
ggCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCa < 2:5996651/93‑1 (MQ=255)
gCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCat < 2:5780074/93‑1 (MQ=255)
cagtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCata < 1:4698740/93‑1 (MQ=255)
cagtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCata > 2:3713016/1‑93 (MQ=255)
cagtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCata < 1:3865401/93‑1 (MQ=255)
agtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCatat < 1:2032/93‑1 (MQ=255)
agtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCatat < 1:4609589/93‑1 (MQ=255)
tcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGt > 1:2847982/1‑93 (MQ=255)
agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGttg > 1:3758602/1‑92 (MQ=255)
agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTc < 1:2633787/93‑1 (MQ=255)
agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTc < 1:4706345/93‑1 (MQ=255)
ttCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGa < 2:4146312/93‑1 (MQ=255)
cATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACg > 2:1804695/1‑93 (MQ=255)
cATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACg < 2:4392460/93‑1 (MQ=255)
ttAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGc > 2:286864/1‑93 (MQ=255)
ttAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGc > 2:3505110/1‑93 (MQ=255)
tAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCa < 1:2713971/93‑1 (MQ=255)
aaGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCAt < 1:4944565/93‑1 (MQ=255)
aaGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGCTCGACGGCAt > 2:573199/1‑93 (MQ=255)
aGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATa < 1:1876000/93‑1 (MQ=255)
aGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATa < 2:4908325/93‑1 (MQ=255)
ccACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAg < 2:1924564/93‑1 (MQ=255)
ccACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAg < 1:949280/93‑1 (MQ=255)
cACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGt > 1:6556765/1‑93 (MQ=255)
aCGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGG‑ACGCAGAGCCATATGTTCGACGGCATAAGtt > 1:2446766/1‑93 (MQ=255)
aCGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGtt < 1:5678767/93‑1 (MQ=255)
aCGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGtt < 1:5812690/93‑1 (MQ=255)
cGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGttt > 2:249956/1‑93 (MQ=255)
cGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGttt > 1:6393914/1‑93 (MQ=255)
cGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGttt > 1:1004815/1‑93 (MQ=255)
gctgctGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTa < 2:1507539/93‑1 (MQ=255)
tgctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAAc > 2:3109858/1‑93 (MQ=255)
tgctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAAc < 2:4649450/93‑1 (MQ=255)
tgctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAAc < 1:1030714/93‑1 (MQ=255)
tgctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAAc < 1:5459982/93‑1 (MQ=255)
ctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCg < 1:1232858/93‑1 (MQ=255)
ctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCg < 2:1850584/93‑1 (MQ=255)
tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGa > 1:3829763/1‑93 (MQ=255)
gAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGaa < 1:6192105/93‑1 (MQ=255)
gAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGaa > 1:5202884/1‑93 (MQ=255)
aaGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAAc < 1:6518490/93‑1 (MQ=255)
gTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACAt < 2:894195/93‑1 (MQ=255)
gTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACAt > 2:229724/1‑93 (MQ=255)
tCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATc < 1:4077286/93‑1 (MQ=255)
cGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCa < 1:5683367/93‑1 (MQ=255)
gTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGc > 2:4684066/1‑93 (MQ=255)
ttCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCg < 1:679165/93‑1 (MQ=255)
ttCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCg > 2:5510434/1‑93 (MQ=255)
tCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCgc > 2:1954890/1‑92 (MQ=255)
cAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTc < 2:3433010/93‑1 (MQ=255)
cAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTc < 2:6490366/93‑1 (MQ=255)
cAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTc < 2:2627901/93‑1 (MQ=255)
gCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagc < 2:512068/93‑1 (MQ=255)
cGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagca < 1:6065938/93‑1 (MQ=255)
gATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagcag > 1:6448567/1‑93 (MQ=255)
gATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagcag > 2:3649667/1‑93 (MQ=255)
tAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGAt < 1:5921081/93‑1 (MQ=255)
aaCTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCTATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATg < 1:3300093/93‑1 (MQ=255)
aaCTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATg > 1:1387057/1‑93 (MQ=255)
aCTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc > 2:6593790/1‑93 (MQ=255)
cTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCg < 2:5068906/93‑1 (MQ=255)
tGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCga < 1:1091509/93‑1 (MQ=255)
tGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCga > 1:3664705/1‑93 (MQ=255)
gCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGTACATCAGCGTCAGCAGATGCgaga > 1:1508619/1‑93 (MQ=255)
cATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGAt > 1:2193919/1‑93 (MQ=255)
tCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCt < 2:3966211/93‑1 (MQ=255)
tCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCt < 2:3898132/93‑1 (MQ=255)
gggTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTAt < 2:2424147/93‑1 (MQ=255)
gggTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTAt > 1:4503294/1‑93 (MQ=255)
aagaaCTTACGCAGCGCA‑GTACGCAGAGTCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAc < 2:2006125/93‑1 (MQ=255)
aagaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAc < 1:4929910/93‑1 (MQ=255)
aagaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAc > 2:6015/1‑93 (MQ=255)
aagaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAc < 2:1316928/93‑1 (MQ=255)
aagaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAc < 2:13771/93‑1 (MQ=255)
agaaCTTACGCAGCGCA‑GTGCGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACa < 2:6423911/93‑1 (MQ=255)
agaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACa < 1:1939324/93‑1 (MQ=255)
agaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACa > 1:3384531/1‑93 (MQ=255)
gaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAg < 2:4109093/93‑1 (MQ=255)
cTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGcc < 2:6256388/93‑1 (MQ=255)
ttACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGccc < 2:5628533/93‑1 (MQ=255)
ttACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGccc > 2:3131761/1‑93 (MQ=255)
ttACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGccc < 1:2160473/93‑1 (MQ=255)
tACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCg > 1:1714498/1‑93 (MQ=255)
tACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCg < 1:5145667/93‑1 (MQ=255)
cgcagcgca‑gtACGCAGAGCCATATGTTCGACGGCATACGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCgcc > 1:5596063/1‑91 (MQ=255)
agcgca‑gtACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACg > 1:1796820/1‑93 (MQ=255)
gcgca‑gtACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGa < 2:2440268/93‑1 (MQ=255)
|
GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑ACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGA > NC_000913/4103427‑4103605
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑ACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCT > NC_000913/4103427‑4103612
|
GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑T > SRR4302547.4525548/1‑94 (MQ=60)
GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑T > SRR4302547.5979932/1‑94 (MQ=60)
GCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑Gta < SRR4302547.6768197/94‑3 (MQ=60)
CCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑Gtac < SRR4302547.4795997/94‑4 (MQ=60)
CTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGACGAACTTACGCAGCGCA‑GTACG > SRR4302547.6589512/1‑94 (MQ=60)
CTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACG > SRR4302547.849948/1‑94 (MQ=60)
CTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACG > SRR4302547.5763039/1‑94 (MQ=60)
TCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGC > SRR4302547.5101641/1‑94 (MQ=60)
CAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCA < SRR4302547.3333184/94‑1 (MQ=60)
CAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCA > SRR4302547.6214207/1‑94 (MQ=60)
CAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCA > SRR4302547.1718855/1‑94 (MQ=60)
AACGCTGGCAGTCAGTTCATTAAGCCACGCTTCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAG < SRR4302547.5147483/94‑1 (MQ=60)
AACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAG > SRR4302547.2797578/1‑94 (MQ=60)
ACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGA > SRR4302547.3412278/1‑94 (MQ=60)
CGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAG < SRR4302547.315526/94‑1 (MQ=60)
CTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCC > SRR4302547.3868030/1‑94 (MQ=60)
TGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCA < SRR4302547.3246951/94‑1 (MQ=60)
TGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCA < SRR4302547.4505096/94‑1 (MQ=60)
CAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATAT < SRR4302547.4796057/94‑1 (MQ=60)
CAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATAT < SRR4302547.3944055/94‑1 (MQ=60)
AGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATG > SRR4302547.14026/1‑94 (MQ=60)
AGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATG < SRR4302547.4704999/94‑1 (MQ=60)
AGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATG < SRR4302547.2067/94‑1 (MQ=60)
GTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGT < SRR4302547.637102/94‑1 (MQ=60)
GTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGT > SRR4302547.2904885/1‑94 (MQ=60)
CAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTG > SRR4302547.3835293/1‑94 (MQ=60)
CAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTC > SRR4302547.617070/1‑94 (MQ=60)
AGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCG < SRR4302547.2686838/94‑1 (MQ=60)
AGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCG < SRR4302547.4803808/94‑1 (MQ=60)
GTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGA < SRR4302547.3000729/94‑1 (MQ=60)
TTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCAGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGAC > SRR4302547.102430/1‑94 (MQ=60)
TTCATGAAGCCACGCTGCTGAATTCGGTTCAGGCTATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGAC < SRR4302547.2171133/94‑1 (MQ=60)
TCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACG > SRR4302547.6551457/1‑94 (MQ=60)
TCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACG < SRR4302547.2397302/94‑1 (MQ=60)
TCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACG < SRR4302547.2406115/94‑1 (MQ=60)
TCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACG < SRR4302547.5139811/94‑1 (MQ=60)
CATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGGGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGG > SRR4302547.6133058/1‑94 (MQ=60)
TAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCAT > SRR4302547.5041981/1‑94 (MQ=60)
TAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCAT < SRR4302547.2868904/94‑1 (MQ=60)
TAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCAT < SRR4302547.2768449/94‑1 (MQ=60)
AAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATA < SRR4302547.5046964/94‑1 (MQ=60)
AGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAA < SRR4302547.1913070/94‑1 (MQ=60)
AGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAA < SRR4302547.3788874/94‑1 (MQ=60)
AGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAA > SRR4302547.869859/1‑94 (MQ=60)
GCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAG < SRR4302547.1943754/94‑1 (MQ=60)
CCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGT > SRR4302547.4172476/1‑94 (MQ=60)
CCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGT < SRR4302547.967718/94‑1 (MQ=60)
CCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGT > SRR4302547.6693292/1‑94 (MQ=60)
CACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGG‑ACGCAGAGCCATATGTTCGACGGCATAAGTT > SRR4302547.2496227/1‑94 (MQ=60)
ACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTT > SRR4302547.1024416/1‑94 (MQ=60)
ACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTT > SRR4302547.6527300/1‑94 (MQ=60)
ACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTT < SRR4302547.5932959/94‑1 (MQ=60)
ACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTT < SRR4302547.5796022/94‑1 (MQ=60)
CGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTA < SRR4302547.450836/94‑1 (MQ=60)
CTGCTGAAGGCGGTTCAAGCGATAACTGGCATTCGGGTGAAGAACTTACGCAGCGCA‑GTAGGCAGAGCCATATGTTCGACTGAATAAGTTTAAC > SRR4302547.5090159/1‑94 (MQ=60)
TGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACC < SRR4302547.1050970/94‑1 (MQ=60)
TGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACC < SRR4302547.797049/94‑1 (MQ=60)
TGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACC > SRR4302547.1765949/1‑94 (MQ=60)
TGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACC < SRR4302547.5572788/94‑1 (MQ=60)
TGCTGAAGTCGGTTCAGCCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACC < SRR4302547.472638/94‑1 (MQ=60)
GCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCG > SRR4302547.1059189/1‑94 (MQ=60)
GCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCG < SRR4302547.5293509/94‑1 (MQ=60)
CTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGA < SRR4302547.1257731/94‑1 (MQ=60)
CTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGA > SRR4302547.5894585/1‑94 (MQ=60)
CTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGA < SRR4302547.2673327/94‑1 (MQ=60)
CTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGA > SRR4302547.3907770/1‑94 (MQ=60)
TGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAA > SRR4302547.5309942/1‑94 (MQ=60)
GAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAAC < SRR4302547.4127380/94‑1 (MQ=60)
GAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAAC < SRR4302547.6320652/94‑1 (MQ=60)
AAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACA < SRR4302547.6654206/94‑1 (MQ=60)
AAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACA < SRR4302547.1719509/94‑1 (MQ=60)
AAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACA > SRR4302547.5769544/1‑94 (MQ=60)
AAGTCGGTTCAGGCGATAACTCGCATCCGGGTGGAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACA > SRR4302547.4866862/1‑94 (MQ=60)
AGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACAT > SRR4302547.3698802/1‑94 (MQ=60)
TCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCA < SRR4302547.4160134/94‑1 (MQ=60)
TCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCA > SRR4302547.1342204/1‑94 (MQ=60)
TCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCA < SRR4302547.6419253/94‑1 (MQ=60)
TCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCA > SRR4302547.5796873/1‑94 (MQ=60)
CGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAG < SRR4302547.2144721/94‑1 (MQ=60)
CGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAG < SRR4302547.5800714/94‑1 (MQ=60)
GGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGC > SRR4302547.535344/1‑94 (MQ=60)
TTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGT < SRR4302547.691684/94‑1 (MQ=60)
AGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAG > SRR4302547.5406567/1‑94 (MQ=60)
AGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAG < SRR4302547.4096364/94‑1 (MQ=60)
GGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGC > SRR4302547.1868044/1‑94 (MQ=60)
CGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAG < SRR4302547.1755005/94‑1 (MQ=60)
CGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAG < SRR4302547.6191755/94‑1 (MQ=60)
CGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAG > SRR4302547.2738372/1‑94 (MQ=60)
CGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAG > SRR4302547.6582916/1‑94 (MQ=60)
ATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGAT < SRR4302547.4632346/94‑1 (MQ=60)
TAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATG < SRR4302547.3347603/94‑1 (MQ=60)
TAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATG > SRR4302547.1414824/1‑94 (MQ=60)
TAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATG < SRR4302547.6043811/94‑1 (MQ=60)
AACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCTATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGC < SRR4302547.3366510/94‑1 (MQ=60)
AACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGC > SRR4302547.5917440/1‑94 (MQ=60)
ACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCG > SRR4302547.1952736/1‑94 (MQ=60)
ACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCG > SRR4302547.1076320/1‑94 (MQ=60)
CTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGA > SRR4302547.3739462/1‑94 (MQ=60)
TGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAG < SRR4302547.2736586/94‑1 (MQ=60)
TGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAG < SRR4302547.1113388/94‑1 (MQ=60)
GGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGTACATCAGCGTCAGCAGATGCGAGA > SRR4302547.1538682/1‑94 (MQ=60)
GGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGCCAGCAGATGCGAGA > SRR4302547.965027/1‑94 (MQ=60)
GCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGAT > SRR4302547.2237969/1‑94 (MQ=60)
ATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCT > SRR4302547.2898996/1‑94 (MQ=60)
TCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTT < SRR4302547.2783711/94‑1 (MQ=60)
CGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTAT < SRR4302547.6779694/94‑1 (MQ=60)
CGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTAT > SRR4302547.4596286/1‑94 (MQ=60)
GAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAC > SRR4302547.5665473/1‑94 (MQ=60)
GAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAC < SRR4302547.1226592/94‑1 (MQ=60)
AAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACA > SRR4302547.3453343/1‑94 (MQ=60)
AAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACA < SRR4302547.5032022/94‑1 (MQ=60)
AGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAG < SRR4302547.1977785/94‑1 (MQ=60)
AACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGC < SRR4302547.1423431/94‑1 (MQ=60)
ACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCC < SRR4302547.1586775/94‑1 (MQ=60)
CTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCC < SRR4302547.6682694/94‑1 (MQ=60)
CTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCC > SRR4302547.1978241/1‑94 (MQ=60)
TTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCG < SRR4302547.3897701/94‑1 (MQ=60)
TTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCG < SRR4302547.5029125/94‑1 (MQ=60)
TTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCG < SRR4302547.2203649/94‑1 (MQ=60)
TTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCG > SRR4302547.1748212/1‑94 (MQ=60)
TACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGG < SRR4302547.5251655/94‑1 (MQ=60)
TACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTAAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGG < SRR4302547.1683957/94‑1 (MQ=60)
ACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATACGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGCC > SRR4302547.5711509/1‑94 (MQ=60)
ACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGC < SRR4302547.6618873/94‑1 (MQ=60)
ACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGC < SRR4302547.3931274/94‑1 (MQ=60)
CGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCA > SRR4302547.2228489/1‑94 (MQ=60)
GCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCAC < SRR4302547.479017/94‑1 (MQ=60)
GCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCAC < SRR4302547.3661524/94‑1 (MQ=60)
CAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACG > SRR4302547.1832366/1‑94 (MQ=60)
GCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAA > SRR4302547.4470556/1‑94 (MQ=60)
CGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAAC > SRR4302547.3663081/1‑94 (MQ=60)
CGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAAC > SRR4302547.5885506/1‑94 (MQ=60)
CGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAAC > SRR4302547.6689357/1‑94 (MQ=60)
CGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAAC < SRR4302547.3739501/94‑1 (MQ=60)
CGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAAC < SRR4302547.329508/94‑1 (MQ=60)
GCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACA < SRR4302547.3098214/94‑1 (MQ=60)
T‑ACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCT > SRR4302547.5981934/1‑94 (MQ=60)
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GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑ACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCT > NC_000913/4103427‑4103612
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
