Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,184,644 |
A→G |
T573A (ACT→GCT) |
rpoC → |
RNA polymerase beta prime subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,184,644 | 0 | A | G | 100.0%
| 1046.6
/ NA
| 285 | T573A (ACT→GCT) | rpoC | RNA polymerase beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (148/137); total (148/137) |
Only 100 of 297 total aligned reads displayed.
TCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCC > NC_000913/4184554‑4184733
|
tctcTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCt > 2:5626842/1‑93 (MQ=255)
tctGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGt < 2:3691615/93‑1 (MQ=255)
tctGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGt > 2:6457921/1‑93 (MQ=255)
tctGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGt > 1:3686183/1‑93 (MQ=255)
gcgcgcGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGt < 2:41920/93‑1 (MQ=255)
gcgTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCa > 2:2126762/1‑93 (MQ=255)
gcgTTAAAGTGCGTATCACCGAGAATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCa > 1:1728673/1‑93 (MQ=255)
gTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCAtt > 1:5774730/1‑93 (MQ=255)
gTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCAtt < 1:2107184/93‑1 (MQ=255)
ttAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTc > 2:3856781/1‑93 (MQ=255)
ttAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTc > 2:1137429/1‑93 (MQ=255)
ttAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTc > 2:6086315/1‑93 (MQ=255)
aaaGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCtg > 1:5467129/1‑93 (MQ=255)
aaGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCtgt > 1:4069255/1‑93 (MQ=255)
gTGCGTATCCCCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTgg < 1:748774/93‑1 (MQ=255)
tGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGga < 2:1036146/93‑1 (MQ=255)
tGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGga < 1:2691573/93‑1 (MQ=255)
gCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgat > 1:3437836/1‑93 (MQ=255)
gTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatga < 2:4983671/93‑1 (MQ=255)
gTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatga > 2:3183799/1‑93 (MQ=255)
gTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatga < 2:897425/93‑1 (MQ=255)
tATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatgat > 1:2769616/1‑93 (MQ=255)
tATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatgat < 1:5567515/93‑1 (MQ=255)
aTCACCGAGTATGAAAAAGTTGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGAtt > 1:6462345/1‑93 (MQ=255)
aTCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGAtt < 1:4920093/93‑1 (MQ=255)
tCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTg < 1:2281042/93‑1 (MQ=255)
tCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTg > 1:257818/1‑93 (MQ=255)
cACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAATCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGt < 1:3936577/93‑1 (MQ=255)
cACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGt > 2:1386539/1‑93 (MQ=255)
ccGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAc < 2:5279079/93‑1 (MQ=255)
cGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAcc < 1:3332702/93‑1 (MQ=255)
gAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCg > 1:4130091/1‑93 (MQ=255)
gAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCg < 2:6379747/93‑1 (MQ=255)
gAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCg > 1:5650828/1‑93 (MQ=255)
aGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGa > 1:2744057/1‑93 (MQ=255)
gTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaa < 2:4008816/93‑1 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa > 1:1654506/1‑93 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa > 2:1734108/1‑93 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa < 2:3082733/93‑1 (MQ=255)
aTGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAg < 1:614152/93‑1 (MQ=255)
tGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACATGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAgg < 2:4667694/93‑1 (MQ=255)
tGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAgg < 2:2498451/93‑1 (MQ=255)
agAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAgg < 1:1000850/92‑1 (MQ=255)
agAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCACCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAgg < 1:477231/92‑1 (MQ=255)
aaaaaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTc < 1:1370124/93‑1 (MQ=255)
aaaaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCt < 1:2886781/93‑1 (MQ=255)
aaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGc > 2:441273/1‑93 (MQ=255)
aGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGcc < 1:596104/93‑1 (MQ=255)
aGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGcc > 2:297845/1‑93 (MQ=255)
gATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCt < 1:1298156/93‑1 (MQ=255)
gCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTAc < 2:7178/93‑1 (MQ=255)
gCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTAc < 2:2256924/93‑1 (MQ=255)
gCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTAc < 1:4512187/93‑1 (MQ=255)
gCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTAc < 1:5009858/93‑1 (MQ=255)
cTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACt < 1:3779592/93‑1 (MQ=255)
aaCGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTcc < 1:3839173/93‑1 (MQ=255)
aCGGTTAATTAGTAGCGAAAGCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCa < 1:6294999/93‑1 (MQ=255)
gTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCCTCg > 1:1112514/1‑93 (MQ=255)
tGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGt > 2:692443/1‑93 (MQ=255)
tGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGt > 1:5191372/1‑93 (MQ=255)
gAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTc < 2:53777/93‑1 (MQ=255)
aTTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCaa < 1:322317/93‑1 (MQ=255)
aTTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCaa > 2:486449/1‑93 (MQ=255)
ttAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAAc > 2:6199468/1‑93 (MQ=255)
agtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCa < 1:5325214/93‑1 (MQ=255)
agtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCa < 1:1814395/93‑1 (MQ=255)
gtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAg < 2:4920347/93‑1 (MQ=255)
gtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAg < 2:4486206/93‑1 (MQ=255)
gtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAg < 1:2638701/93‑1 (MQ=255)
tagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAgg < 1:3141697/93‑1 (MQ=255)
agCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGgc < 2:6561510/93‑1 (MQ=255)
aaaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTg > 1:1077898/1‑93 (MQ=255)
aaaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTg < 1:429431/93‑1 (MQ=255)
aaaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTg > 1:6272147/1‑93 (MQ=255)
aaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTgg > 1:4655070/1‑93 (MQ=255)
aaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTgg < 2:3018036/93‑1 (MQ=255)
aCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGt > 1:4425212/1‑93 (MQ=255)
aCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGt < 2:5838380/93‑1 (MQ=255)
ccAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTTCATCGTCAACCAGGCGCTGGGTa > 2:2874000/1‑93 (MQ=255)
ccAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTa > 1:6593694/1‑93 (MQ=255)
ccAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTa < 1:1161528/93‑1 (MQ=255)
cAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaa > 2:1767452/1‑93 (MQ=255)
aGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaa > 2:3261678/1‑93 (MQ=255)
ccTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaaaa > 2:2334479/1‑93 (MQ=255)
cTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaaaaa < 2:2025140/93‑1 (MQ=255)
cTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaaaaa > 2:1861815/1‑93 (MQ=255)
cTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaaaaa > 1:221793/1‑93 (MQ=255)
tGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAg < 1:6424494/93‑1 (MQ=255)
gAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGCTTGTACCGAAAGGCATGCCTTACTCTATCGTCAACCAGGGGCTGGGGAAAACAGc > 1:2974187/1‑93 (MQ=255)
gAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGc > 2:4820699/1‑93 (MQ=255)
gAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGc < 2:3152097/93‑1 (MQ=255)
gAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGc > 2:4526472/1‑93 (MQ=255)
aaaGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCa > 1:2456666/1‑93 (MQ=255)
aaGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCaa < 2:3485244/93‑1 (MQ=255)
aGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAt > 2:4032753/1‑93 (MQ=255)
gACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAtc > 2:2626981/1‑93 (MQ=255)
gACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAtc < 2:551847/93‑1 (MQ=255)
cacGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAtctc > 2:3762526/1‑93 (MQ=255)
acGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTcc > 1:5893755/1‑93 (MQ=255)
acGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTcc < 2:5784661/93‑1 (MQ=255)
|
TCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCC > NC_000913/4184554‑4184733
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAA > NC_000913/4184551‑4184736
|
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGG > SRR4302547.2065193/1‑94 (MQ=60)
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGG < SRR4302547.3210868/94‑1 (MQ=60)
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGG > SRR4302547.4532347/1‑94 (MQ=60)
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGG < SRR4302547.6279776/94‑1 (MQ=60)
TTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCT > SRR4302547.4298941/1‑94 (MQ=60)
TTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCT < SRR4302547.6073793/94‑1 (MQ=60)
TCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTG < SRR4302547.1155651/94‑1 (MQ=60)
CTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGT > SRR4302547.3761437/1‑94 (MQ=60)
CTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGT < SRR4302547.2577160/94‑1 (MQ=60)
CTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGTTGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTG > SRR4302547.2198838/1‑94 (MQ=60)
TGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGG < SRR4302547.408567/94‑1 (MQ=60)
CATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCC > SRR4302547.3894628/1‑94 (MQ=60)
ATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCG > SRR4302547.2031190/1‑94 (MQ=60)
TGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGT < SRR4302547.2160198/94‑1 (MQ=60)
TGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGT < SRR4302547.2782841/94‑1 (MQ=60)
GCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTG < SRR4302547.5724111/94‑1 (MQ=60)
CGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGC > SRR4302547.2677903/1‑94 (MQ=60)
GCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCC < SRR4302547.3528774/94‑1 (MQ=60)
CGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCA < SRR4302547.1295876/94‑1 (MQ=60)
CGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCA > SRR4302547.5489830/1‑94 (MQ=60)
CGCGTTAAAGTGCGTATCACCGAGAATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCA > SRR4302547.1762635/1‑94 (MQ=60)
CGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATT > SRR4302547.5894171/1‑94 (MQ=60)
CGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATT > SRR4302547.2341726/1‑94 (MQ=60)
CGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATT > SRR4302547.1409589/1‑94 (MQ=60)
GTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTC < SRR4302547.2149166/94‑1 (MQ=60)
TTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCT < SRR4302547.6415350/94‑1 (MQ=60)
TTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCT < SRR4302547.5036373/94‑1 (MQ=60)
TAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTG > SRR4302547.283261/1‑94 (MQ=60)
TAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTG > SRR4302547.5580071/1‑94 (MQ=60)
AAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGT > SRR4302547.4151915/1‑94 (MQ=60)
AAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGT > SRR4302547.3021366/1‑94 (MQ=60)
AAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTG > SRR4302547.4710474/1‑94 (MQ=60)
AGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGG > SRR4302547.5797682/1‑94 (MQ=60)
GTGCGTATCCCCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGA < SRR4302547.762892/94‑1 (MQ=60)
TGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGAT < SRR4302547.2745604/94‑1 (MQ=60)
GGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGAT > SRR4302547.3507930/1‑94 (MQ=60)
GTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGAT > SRR4302547.2825107/1‑94 (MQ=60)
CTATCACCGAGTATGAAAAAGATGCTAACGGTTAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGAT < SRR4302547.3510620/94‑1 (MQ=60)
TATCACCGAGTATGAAAAAGTTGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATT > SRR4302547.6596920/1‑94 (MQ=60)
TATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATT < SRR4302547.5682320/94‑1 (MQ=60)
ATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTG < SRR4302547.4284840/94‑1 (MQ=60)
ATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTG > SRR4302547.262645/1‑94 (MQ=60)
ATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTG < SRR4302547.5021994/94‑1 (MQ=60)
ATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTG < SRR4302547.2716081/94‑1 (MQ=60)
TCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGT < SRR4302547.2327214/94‑1 (MQ=60)
TCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGT < SRR4302547.181306/94‑1 (MQ=60)
CACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAATCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTA < SRR4302547.4016628/94‑1 (MQ=60)
CACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTA < SRR4302547.5903821/94‑1 (MQ=60)
ACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAC > SRR4302547.3384094/1‑94 (MQ=60)
ACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAC < SRR4302547.4992602/94‑1 (MQ=60)
CGAGTATGAAAAAGTTGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACAAGGCTGTTGGCCCTGCCATTCTCTGGATGATTGTACCG > SRR4302547.3091731/1‑94 (MQ=60)
CGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCG < SRR4302547.3400103/94‑1 (MQ=60)
CGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCG > SRR4302547.4214106/1‑94 (MQ=60)
CGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCG < SRR4302547.6456185/94‑1 (MQ=60)
CGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCG > SRR4302547.2337795/1‑94 (MQ=60)
CGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCG > SRR4302547.5767482/1‑94 (MQ=60)
GAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGA > SRR4302547.2799092/1‑94 (MQ=60)
AGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAA < SRR4302547.5749991/94‑1 (MQ=60)
GTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAA > SRR4302547.1687148/1‑94 (MQ=60)
TATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAG > SRR4302547.1252593/1‑94 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG > SRR4302547.1377072/1‑94 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG < SRR4302547.1368600/94‑1 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG > SRR4302547.685641/1‑94 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG < SRR4302547.4910656/94‑1 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG < SRR4302547.625528/94‑1 (MQ=60)
TGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGT < SRR4302547.6078704/94‑1 (MQ=60)
AGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGT < SRR4302547.1020363/94‑1 (MQ=60)
AGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCACCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGT < SRR4302547.486000/94‑1 (MQ=60)
GAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATTATTGTACCGAAAGGTC < SRR4302547.4410394/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302547.1397618/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT > SRR4302547.2811584/1‑94 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302547.3947146/94‑1 (MQ=60)
AAAAAGATGCGAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302547.2576469/94‑1 (MQ=60)
AAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTG < SRR4302547.2944384/94‑1 (MQ=60)
AAATATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGC < SRR4302547.6362200/94‑1 (MQ=60)
AAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCC > SRR4302547.5833859/1‑94 (MQ=60)
AGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCT < SRR4302547.607051/94‑1 (MQ=60)
GATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTT > SRR4302547.5048103/1‑94 (MQ=60)
GATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTT < SRR4302547.4788189/94‑1 (MQ=60)
GATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTT < SRR4302547.1324287/94‑1 (MQ=60)
ATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTA < SRR4302547.1112312/94‑1 (MQ=60)
ATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTA < SRR4302547.6690945/94‑1 (MQ=60)
TGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTAC > SRR4302547.6049445/1‑94 (MQ=60)
GCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACT < SRR4302547.2714268/94‑1 (MQ=60)
GCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACT < SRR4302547.5113434/94‑1 (MQ=60)
GCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACT < SRR4302547.4605413/94‑1 (MQ=60)
GCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGGCTGCCTTACT > SRR4302547.6583889/1‑94 (MQ=60)
CTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAGAGGTCTGCCTTACTC > SRR4302547.6355645/1‑94 (MQ=60)
CTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTC > SRR4302547.6248765/1‑94 (MQ=60)
CTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTC < SRR4302547.4167302/94‑1 (MQ=60)
CTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTC > SRR4302547.1622380/1‑94 (MQ=60)
CTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTC < SRR4302547.3856664/94‑1 (MQ=60)
AACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCA < SRR4302547.3917367/94‑1 (MQ=60)
ACGGTTAATTAGTAGCGAAAGCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCAT < SRR4302547.6425859/94‑1 (MQ=60)
CGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATC < SRR4302547.229075/94‑1 (MQ=60)
GGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCCTCG > SRR4302547.1134918/1‑94 (MQ=60)
GGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCG > SRR4302547.5328595/1‑94 (MQ=60)
GGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCG > SRR4302547.1940656/1‑94 (MQ=60)
GGGGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTAGCCGTGCCATTCTGTGGATGATTGGCCCGTAAGGTATGCCTTAATCCATCG > SRR4302547.1548381/1‑94 (MQ=60)
GTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGT > SRR4302547.4665932/1‑94 (MQ=60)
GTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGT > SRR4302547.5298213/1‑94 (MQ=60)
GTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGT < SRR4302547.3457317/94‑1 (MQ=60)
GTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGT < SRR4302547.759012/94‑1 (MQ=60)
TGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCGGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTC > SRR4302547.5785737/1‑94 (MQ=60)
GAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCA < SRR4302547.3190113/94‑1 (MQ=60)
GAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCA > SRR4302547.3790004/1‑94 (MQ=60)
AATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAA > SRR4302547.4125192/1‑94 (MQ=60)
ATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAAC < SRR4302547.328310/94‑1 (MQ=60)
ATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAAC > SRR4302547.3425558/1‑94 (MQ=60)
TTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACC < SRR4302547.6717787/94‑1 (MQ=60)
TTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGAGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTAATCCATCGTCAACA > SRR4302547.2750402/1‑94 (MQ=60)
AGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGatggtttttccggaaagtctgactttattcattgtcaaccatg > SRR4302547.5340386/1‑51 (MQ=60)
AGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAG < SRR4302547.1850236/94‑1 (MQ=60)
AGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAG > SRR4302547.3012311/1‑94 (MQ=60)
AGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAG < SRR4302547.5434977/94‑1 (MQ=60)
GTAGCGACAAGCAGCCTGAAAGACACGGCTGGTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCATTACTCCATCGTCAACCAGG < SRR4302547.5588945/94‑1 (MQ=60)
GTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGG > SRR4302547.5948557/1‑94 (MQ=60)
GTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGG < SRR4302547.2691821/94‑1 (MQ=60)
GTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGG < SRR4302547.6482524/94‑1 (MQ=60)
TAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGC < SRR4302547.3204110/94‑1 (MQ=60)
CGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCT < SRR4302547.3832602/94‑1 (MQ=60)
GAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTG > SRR4302547.1099411/1‑94 (MQ=60)
GAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTG > SRR4302547.6402429/1‑94 (MQ=60)
AAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGG > SRR4302547.4751480/1‑94 (MQ=60)
AAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGG < SRR4302547.437385/94‑1 (MQ=60)
AAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGG < SRR4302547.5462802/94‑1 (MQ=60)
AACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGT > SRR4302547.4516641/1‑94 (MQ=60)
AACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGT > SRR4302547.2324750/1‑94 (MQ=60)
ACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTA > SRR4302547.6730974/1‑94 (MQ=60)
ACCAGCATGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTA < SRR4302547.3264609/94‑1 (MQ=60)
CCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAA < SRR4302547.1185025/94‑1 (MQ=60)
AGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAA > SRR4302547.2655379/1‑94 (MQ=60)
CCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAA > SRR4302547.3978428/1‑94 (MQ=60)
CCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAA > SRR4302547.225968/1‑94 (MQ=60)
CCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAA > SRR4302547.4528237/1‑94 (MQ=60)
CCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAA > SRR4302547.262124/1‑94 (MQ=60)
CTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAG > SRR4302547.3890229/1‑94 (MQ=60)
CTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAG > SRR4302547.117490/1‑94 (MQ=60)
TGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGCTTGTACCGAAAGGCATGCCTTACTCTATCGTCAACCAGGGGCTGGGGAAAACAGC > SRR4302547.3033373/1‑94 (MQ=60)
TGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGC > SRR4302547.1107682/1‑94 (MQ=60)
TGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGC < SRR4302547.6558433/94‑1 (MQ=60)
TGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGC > SRR4302547.1734700/1‑94 (MQ=60)
GAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCA > SRR4302547.2506310/1‑94 (MQ=60)
GAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCA > SRR4302547.4165764/1‑94 (MQ=60)
GAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCA > SRR4302547.1753920/1‑94 (MQ=60)
AAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAA > SRR4302547.4485710/1‑94 (MQ=60)
AAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAT > SRR4302547.1078670/1‑94 (MQ=60)
AAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAT > SRR4302547.5614285/1‑94 (MQ=60)
AAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAT > SRR4302547.4574903/1‑94 (MQ=60)
AGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATC > SRR4302547.3366801/1‑94 (MQ=60)
AGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATC > SRR4302547.656925/1‑94 (MQ=60)
AGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATC < SRR4302547.6162085/94‑1 (MQ=60)
AGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATC > SRR4302547.2805138/1‑94 (MQ=60)
GACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCT < SRR4302547.3211217/94‑1 (MQ=60)
ACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTC > SRR4302547.2861829/1‑94 (MQ=60)
ACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTC < SRR4302547.6416349/94‑1 (MQ=60)
ACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTC < SRR4302547.5162577/94‑1 (MQ=60)
ACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTC > SRR4302547.5219692/1‑94 (MQ=60)
CACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCC > SRR4302547.6015777/1‑94 (MQ=60)
ACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCA > SRR4302547.2054950/1‑94 (MQ=60)
ACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCA > SRR4302547.1827489/1‑94 (MQ=60)
ACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCA > SRR4302547.4382570/1‑94 (MQ=60)
ACGCCTGTGGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCA < SRR4302547.1843693/94‑1 (MQ=60)
GGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAA > SRR4302547.2926142/1‑94 (MQ=60)
GGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAA > SRR4302547.6297501/1‑94 (MQ=60)
GGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAA > SRR4302547.1311711/1‑94 (MQ=60)
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GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAA > NC_000913/4184551‑4184736
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
