Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,184,644 |
A→G |
T573A (ACT→GCT) |
rpoC → |
RNA polymerase beta prime subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,184,644 | 0 | A | G | 100.0%
| 860.8
/ NA
| 238 | T573A (ACT→GCT) | rpoC | RNA polymerase beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (124/114); total (124/114) |
Only 100 of 247 total aligned reads displayed.
TCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTC > NC_000913/4184554‑4184732
|
ctGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGtt < 2:1309032/93‑1 (MQ=255)
tGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTg > 2:3720356/1‑93 (MQ=255)
gCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTgg < 1:5869951/93‑1 (MQ=255)
gCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGGGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTgg > 2:2189052/1‑93 (MQ=255)
cATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGc > 2:4063042/1‑93 (MQ=255)
aTGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGcc < 1:363620/93‑1 (MQ=255)
tGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCg > 1:732931/1‑93 (MQ=255)
tGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCg > 1:3835226/1‑93 (MQ=255)
tGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCg > 2:236878/1‑93 (MQ=255)
gcgcgTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGc > 1:5533588/1‑93 (MQ=255)
ttAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTc > 1:2434753/1‑93 (MQ=255)
ttAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTc > 1:5902766/1‑93 (MQ=255)
tAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCt < 1:1741253/93‑1 (MQ=255)
aaaGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAAGTAGTAGCGAAAACCAGACTGAAAGACACGGCTGTTGGCCGTGGCCTTCtg > 2:4578142/1‑93 (MQ=255)
aaGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCtgt > 1:1078988/1‑93 (MQ=255)
aGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCtgtg < 1:6019056/93‑1 (MQ=255)
aGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCtgtg < 1:3105996/93‑1 (MQ=255)
aGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCtgtg < 2:1408941/93‑1 (MQ=255)
gtccGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTgg < 1:4204603/90‑1 (MQ=255)
tGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGga < 2:2676702/93‑1 (MQ=255)
tGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGga > 2:2685118/1‑93 (MQ=255)
ctaaTCACCGAGTATGAAAAAGATGCTAACGGTGAATCAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCGGTGCCATTCTGTGgatg < 1:3421205/90‑1 (MQ=255)
gTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatga > 1:3774606/1‑93 (MQ=255)
gTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatga > 2:1284397/1‑93 (MQ=255)
gTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatga > 2:5242205/1‑93 (MQ=255)
tATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatgat < 1:843321/93‑1 (MQ=255)
tATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGgatgat < 1:4284988/93‑1 (MQ=255)
aTCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGAtt < 1:3460806/93‑1 (MQ=255)
cACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGt > 2:5365076/1‑93 (MQ=255)
cACCGAGGATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGt < 2:1467061/93‑1 (MQ=255)
aCCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTa < 2:4898596/93‑1 (MQ=255)
aCCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTa > 1:4424330/1‑93 (MQ=255)
ccGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAc > 1:2968678/1‑93 (MQ=255)
ccGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAc < 1:3135172/93‑1 (MQ=255)
cGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAcc < 2:451329/93‑1 (MQ=255)
cGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAcc > 1:2907665/1‑93 (MQ=255)
gAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCg > 2:3513842/1‑93 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa > 2:679730/1‑93 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa < 1:1842495/93‑1 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa < 1:5977002/93‑1 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa > 2:3299100/1‑93 (MQ=255)
tATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGaaa > 2:3155647/1‑93 (MQ=255)
aTGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGGTGATGGTACCGAAAg > 2:1893804/1‑93 (MQ=255)
tGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAgg > 2:4221439/1‑93 (MQ=255)
tGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAgg > 1:2068796/1‑93 (MQ=255)
gAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGt > 1:4055718/1‑93 (MQ=255)
gAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGt < 1:3613823/93‑1 (MQ=255)
aaaaaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTc < 1:1192160/93‑1 (MQ=255)
aaaaaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTc < 1:3968859/93‑1 (MQ=255)
aaaaaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTc > 1:1688464/1‑93 (MQ=255)
aacaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCt < 1:5475691/90‑1 (MQ=255)
aaaGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGAGGATGATTGTACCGAAAGGTCTg > 1:3502366/1‑93 (MQ=255)
aGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGcc < 2:5686186/93‑1 (MQ=255)
aTGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCtt > 2:1681755/1‑93 (MQ=255)
tAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTc < 2:3547052/93‑1 (MQ=255)
tAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTc < 2:4516635/93‑1 (MQ=255)
aaCGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTcc < 1:3344063/93‑1 (MQ=255)
aaCGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTcc > 1:2836817/1‑93 (MQ=255)
aCGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCa < 2:4208679/93‑1 (MQ=255)
aCGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCa > 2:562434/1‑93 (MQ=255)
cGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCAt > 1:5109842/1‑93 (MQ=255)
ggTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATc < 2:4874597/93‑1 (MQ=255)
ggTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATc > 2:99374/1‑93 (MQ=255)
ggTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATc < 2:1067461/93‑1 (MQ=255)
gAATTAGTAGCGAAAACCAGCCGGAAAGACACGGCGGTTGGCCGTGCCAGCCTGAGGATGATGGGACCGAAAGGGCTGCCTCACTCCATCgcc > 2:4761635/1‑91 (MQ=255)
aaTTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCa > 2:3515334/1‑93 (MQ=255)
aTTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCaa > 1:3014593/1‑93 (MQ=255)
ttAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAAc < 1:4927509/93‑1 (MQ=255)
tagtagCGAAAACCAGCCTGAAAGACTCGGCTGTTGGCCTTGCCATTCTGTGTTTGTTTGTACCGAAAGGTCTGCCTTACTTTTTCGTCaatc > 1:4757556/1‑91 (MQ=255)
tagtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAAcc > 1:4855714/1‑93 (MQ=255)
gtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAg < 1:1221720/93‑1 (MQ=255)
gtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAg < 2:791315/93‑1 (MQ=255)
gtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAg > 1:669073/1‑93 (MQ=255)
gtagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAg < 1:771762/93‑1 (MQ=255)
tagCGAAACCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAgg < 2:3440124/93‑1 (MQ=255)
tagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAgg > 2:3825096/1‑93 (MQ=255)
tagCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAAACAgg > 1:979651/1‑93 (MQ=255)
agCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGgc < 1:877398/93‑1 (MQ=255)
cGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGgcgc < 2:5905214/93‑1 (MQ=255)
cGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGgcgc < 1:261255/93‑1 (MQ=255)
gAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCt < 2:6064222/93‑1 (MQ=255)
aaaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTg < 1:5979957/93‑1 (MQ=255)
aaaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGGCTGCCTTACTCCATCGTCAACAAGGCGCTg > 1:533350/1‑93 (MQ=255)
aaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTgg < 2:1635028/93‑1 (MQ=255)
aaaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTgg > 1:1445044/1‑93 (MQ=255)
aaCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTATGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTggg < 1:2287264/93‑1 (MQ=255)
aCCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGt < 1:5188416/93‑1 (MQ=255)
aCCAGCCTGAAAGACACGGCTGTCGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGt > 2:2590910/1‑93 (MQ=255)
ccAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTa < 2:3641762/93‑1 (MQ=255)
cAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCCGGCGCTGGGGaa > 1:90343/1‑93 (MQ=255)
cAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaa < 1:5329050/93‑1 (MQ=255)
aGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaa > 2:2851840/1‑93 (MQ=255)
gCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaaa > 1:4127875/1‑93 (MQ=255)
ccTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaaaa > 2:2996931/1‑93 (MQ=255)
cTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTaaaaaa < 1:3182767/93‑1 (MQ=255)
gAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGc > 2:5173500/1‑93 (MQ=255)
aaaGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCa > 2:2499586/1‑93 (MQ=255)
aaGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCaa > 1:4419362/1‑93 (MQ=255)
gACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAtc < 1:3781806/93‑1 (MQ=255)
acacGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAtct > 2:5649388/1‑93 (MQ=255)
|
TCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTC > NC_000913/4184554‑4184732
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAA > NC_000913/4184551‑4184735
|
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGG < SRR4302532.937553/94‑1 (MQ=60)
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGG < SRR4302532.4862889/94‑1 (MQ=60)
CTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTG < SRR4302532.3079854/94‑1 (MQ=60)
TGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGG > SRR4302532.1911428/1‑94 (MQ=60)
TGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGG < SRR4302532.1448274/94‑1 (MQ=60)
GCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGC < SRR4302532.6073374/94‑1 (MQ=60)
GCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGC < SRR4302532.4450459/94‑1 (MQ=60)
ATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCG > SRR4302532.4185922/1‑94 (MQ=60)
ATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCG > SRR4302532.5516396/1‑94 (MQ=60)
ATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCG > SRR4302532.757902/1‑94 (MQ=60)
ATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCG < SRR4302532.376208/94‑1 (MQ=60)
ATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCG > SRR4302532.3964712/1‑94 (MQ=60)
GCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTG < SRR4302532.1395692/94‑1 (MQ=60)
CGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGC > SRR4302532.4764441/1‑94 (MQ=60)
CGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGC > SRR4302532.5725618/1‑94 (MQ=60)
CGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCA < SRR4302532.5050120/94‑1 (MQ=60)
CGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCA > SRR4302532.4161253/1‑94 (MQ=60)
CGTTAAAGTGCGTATCACCGAGTCTGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATT < SRR4302532.3612572/94‑1 (MQ=60)
CGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATT > SRR4302532.869894/1‑94 (MQ=60)
CGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATT > SRR4302532.710097/1‑94 (MQ=60)
GTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTC < SRR4302532.3542541/94‑1 (MQ=60)
GTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTC > SRR4302532.2515692/1‑94 (MQ=60)
GTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTC > SRR4302532.2515693/1‑94 (MQ=60)
GTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTC > SRR4302532.5150138/1‑94 (MQ=60)
GTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTC > SRR4302532.6107166/1‑94 (MQ=60)
TTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTTCCATTCT < SRR4302532.6183936/94‑1 (MQ=60)
TAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTG < SRR4302532.1799849/94‑1 (MQ=60)
TAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTG > SRR4302532.1795730/1‑94 (MQ=60)
AAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGT > SRR4302532.1115179/1‑94 (MQ=60)
AAAGAGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAACGACAACCAGCCTGAAAGACACGGCTGTTAGCAGTGCCATTCTGT > SRR4302532.5215300/1‑94 (MQ=60)
AAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTG > SRR4302532.180937/1‑94 (MQ=60)
AAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTG > SRR4302532.3343961/1‑94 (MQ=60)
AGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGT < SRR4302532.3209005/94‑1 (MQ=60)
AGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGG > SRR4302532.2775591/1‑94 (MQ=60)
AGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGG < SRR4302532.6226921/94‑1 (MQ=60)
AGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGG < SRR4302532.6144769/94‑1 (MQ=60)
GTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGA < SRR4302532.4345759/94‑1 (MQ=60)
GTCCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGA < SRR4302532.4345761/94‑1 (MQ=60)
TGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGAT < SRR4302532.3359869/94‑1 (MQ=60)
TGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGAT < SRR4302532.6329900/94‑1 (MQ=60)
GCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATG < SRR4302532.3906713/94‑1 (MQ=60)
ctaATCACCGAGTATGAAAAAGATGCTAACGGTGAATCAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCGGTGCCATTCTGTGGATGA < SRR4302532.3535815/91‑1 (MQ=60)
CGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGA > SRR4302532.3901702/1‑94 (MQ=60)
TATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATT < SRR4302532.872290/94‑1 (MQ=60)
TATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATT < SRR4302532.4429450/94‑1 (MQ=60)
ATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTG < SRR4302532.3576717/94‑1 (MQ=60)
CACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTA > SRR4302532.3532265/1‑94 (MQ=60)
CACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTA > SRR4302532.4575056/1‑94 (MQ=60)
CACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTA > SRR4302532.4575055/1‑94 (MQ=60)
ACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTAC > SRR4302532.3066969/1‑94 (MQ=60)
CCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACC < SRR4302532.3239234/94‑1 (MQ=60)
CCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACC > SRR4302532.3227381/1‑94 (MQ=60)
CCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACC > SRR4302532.3004648/1‑94 (MQ=60)
CGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCG < SRR4302532.1144792/94‑1 (MQ=60)
CGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCG < SRR4302532.252786/94‑1 (MQ=60)
GAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGA < SRR4302532.5710012/94‑1 (MQ=60)
GTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCCAAA > SRR4302532.3842690/1‑94 (MQ=60)
TATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAG < SRR4302532.1903693/94‑1 (MQ=60)
TATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAG < SRR4302532.6183583/94‑1 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG > SRR4302532.5529017/1‑94 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG < SRR4302532.5615702/94‑1 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG > SRR4302532.3043317/1‑94 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG > SRR4302532.2137733/1‑94 (MQ=60)
ATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGG < SRR4302532.3934358/94‑1 (MQ=60)
TGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGT > SRR4302532.4192113/1‑94 (MQ=60)
TGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGT < SRR4302532.991201/94‑1 (MQ=60)
TGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGT > SRR4302532.3936370/1‑94 (MQ=60)
GAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTC > SRR4302532.1745489/1‑94 (MQ=60)
GAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTC < SRR4302532.3734679/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTTTGGATGATTGTACCGAAAGGTCT > SRR4302532.3668878/1‑94 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302532.4102561/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302532.1232024/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302532.3569366/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302532.2702348/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT > SRR4302532.1779980/1‑94 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCT < SRR4302532.1651335/94‑1 (MQ=60)
AAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGCACCGAAAGGTCT < SRR4302532.4300952/94‑1 (MQ=60)
AACAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTG < SRR4302532.5665547/94‑1 (MQ=60)
AAAAGATGCTAGCGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTG < SRR4302532.2119980/94‑1 (MQ=60)
AAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGAGGATGATTGTACCGAAAGGTCTG > SRR4302532.3619687/1‑94 (MQ=60)
AAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGC > SRR4302532.2310111/1‑94 (MQ=60)
agaatgttacgggtgaattgttaggaaaacCCAGCCTG‑AAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCT < SRR4302532.3141595/64‑1 (MQ=60)
AGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTGCCGAAAGGTCTGCCT < SRR4302532.5345483/94‑1 (MQ=60)
AGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCT < SRR4302532.5814150/94‑1 (MQ=60)
ATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTA > SRR4302532.3738009/1‑94 (MQ=60)
TGCTAACGGTAAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTAC < SRR4302532.5513433/94‑1 (MQ=60)
CTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTC > SRR4302532.796313/1‑94 (MQ=60)
CTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTC > SRR4302532.6085275/1‑94 (MQ=60)
TAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCC > SRR4302532.900487/1‑94 (MQ=60)
TAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCC > SRR4302532.409320/1‑94 (MQ=60)
TAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCC > SRR4302532.2931654/1‑94 (MQ=60)
AACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCA < SRR4302532.620730/94‑1 (MQ=60)
AACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCA < SRR4302532.2387924/94‑1 (MQ=60)
AACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCA < SRR4302532.3455675/94‑1 (MQ=60)
AACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCA > SRR4302532.4224289/1‑94 (MQ=60)
ACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCAT > SRR4302532.5285533/1‑94 (MQ=60)
ACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCAT > SRR4302532.4423362/1‑94 (MQ=60)
CGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATC < SRR4302532.6120697/94‑1 (MQ=60)
CGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATC < SRR4302532.5945417/94‑1 (MQ=60)
GGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCG < SRR4302532.3704991/94‑1 (MQ=60)
GGTGAATAAGTGGCGACAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCG < SRR4302532.29811/94‑1 (MQ=60)
AATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAA < SRR4302532.3046848/94‑1 (MQ=60)
AATTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAA > SRR4302532.3114084/1‑94 (MQ=60)
TTAGTAGCGAAAACCAGCCTGAAAGACTCGGCTGTTGGCCTTGCCATTCTGTGTTTGTTTGTACCGAAAGGTCTGCCTTACTttttcgtcaatc > SRR4302532.4920332/1‑82 (MQ=60)
TTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACC > SRR4302532.5022791/1‑94 (MQ=60)
TTAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACC < SRR4302532.5096726/94‑1 (MQ=60)
TAGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCA < SRR4302532.873824/94‑1 (MQ=60)
AGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAG < SRR4302532.5022670/94‑1 (MQ=60)
AGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAG > SRR4302532.692152/1‑94 (MQ=60)
AGTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAG > SRR4302532.3192990/1‑94 (MQ=60)
GTAGCGAAAACCAGCGTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGG < SRR4302532.3890142/94‑1 (MQ=60)
GTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGG < SRR4302532.1262591/94‑1 (MQ=60)
GTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGG < SRR4302532.798389/94‑1 (MQ=60)
GTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGG > SRR4302532.3276182/1‑94 (MQ=60)
GTAGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAAACAGG > SRR4302532.1013088/1‑94 (MQ=60)
AGCGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCG < SRR4302532.907409/94‑1 (MQ=60)
CGAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCT < SRR4302532.270335/94‑1 (MQ=60)
GAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCGACCAGGCGCTG > SRR4302532.993120/1‑94 (MQ=60)
GAAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGGCTGCCTTACTCCATCGTCAACAAGGCGCTG > SRR4302532.551944/1‑94 (MQ=60)
AAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGG < SRR4302532.6186607/94‑1 (MQ=60)
AAAACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGG > SRR4302532.1493782/1‑94 (MQ=60)
AACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGA > SRR4302532.5383460/1‑94 (MQ=60)
AACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTATGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGT < SRR4302532.2363183/94‑1 (MQ=60)
ACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTA < SRR4302532.5367220/94‑1 (MQ=60)
ACCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTA < SRR4302532.1247134/94‑1 (MQ=60)
CCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCCGGCGCTGGGGAA > SRR4302532.93505/1‑94 (MQ=60)
CCAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAA > SRR4302532.93503/1‑94 (MQ=60)
CAGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAA < SRR4302532.5513795/94‑1 (MQ=60)
AGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAA > SRR4302532.704450/1‑94 (MQ=60)
AGCCTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAA > SRR4302532.4266375/1‑94 (MQ=60)
CTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAG > SRR4302532.3159659/1‑94 (MQ=60)
CTGAAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAG < SRR4302532.3288459/94‑1 (MQ=60)
AAAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAA > SRR4302532.4569902/1‑94 (MQ=60)
AAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAT > SRR4302532.4923320/1‑94 (MQ=60)
AAGACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAAT < SRR4302532.4540679/94‑1 (MQ=60)
GACACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCT < SRR4302532.3909274/94‑1 (MQ=60)
CACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCC < SRR4302532.6207765/94‑1 (MQ=60)
ACGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCA > SRR4302532.5733965/1‑94 (MQ=60)
CGGCTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAA < SRR4302532.2509962/94‑1 (MQ=60)
|
GCTTCTCTGCATGCGCGCGTTAAAGTGCGTATCACCGAGTATGAAAAAGATGCTAACGGTGAATTAGTAGCGAAAACCAGCCTGAAAGACACGACTGTTGGCCGTGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAA > NC_000913/4184551‑4184735
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
