Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,229,642	A→G	L391L (TTG→CTG)	lysC ←	aspartokinase III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,229,642	0	A	G	100.0%	964.3 / NA	260	L391L (TTG→CTG)	lysC	aspartokinase III
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (136/124); total (136/124)

Only 100 of 270 total aligned reads displayed.

CATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAG  >  NC_000913/4229552‑4229731

cATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGcg                                                                                         >  1:561826/1‑93 (MQ=255)

 aTAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAgcgc                                                                                        <  2:3993284/93‑1 (MQ=255)

 aTAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAgcgc                                                                                        >  2:2209205/1‑93 (MQ=255)

   aaCAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGa                                                                                      <  1:570062/93‑1 (MQ=255)

   aaCAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGa                                                                                      >  2:4159828/1‑93 (MQ=255)

     cAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGAcc                                                                                    >  1:254236/1‑93 (MQ=255)

     cAAATAATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGAcc                                                                                    >  1:4327675/1‑93 (MQ=255)

       aaTCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAg                                                                                  <  1:6570432/93‑1 (MQ=255)

       aaTCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAg                                                                                  >  2:2407869/1‑93 (MQ=255)

        aTCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAgc                                                                                 >  1:6322832/1‑93 (MQ=255)

        aTCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAgc                                                                                 <  2:2590374/93‑1 (MQ=255)

         tCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAgcg                                                                                >  2:5236222/1‑93 (MQ=255)

         tCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAgcg                                                                                >  2:3164563/1‑93 (MQ=255)

          cATGCGAATGTTGAACGGTTCCAGTACGCCGAATACATCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAgcgc                                                                               <  2:3469288/93‑1 (MQ=255)

           aTGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGcc                                                                              <  2:2959749/93‑1 (MQ=255)

              cGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGa                                                                           >  2:1705255/1‑93 (MQ=255)

               gAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGAc                                                                          >  2:2773601/1‑93 (MQ=255)

                  tGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACctt                                                                       >  1:1097268/1‑93 (MQ=255)

                  tGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACctt                                                                       >  1:901117/1‑93 (MQ=255)

                    ttGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACcttct                                                                     <  1:1505453/93‑1 (MQ=255)

                    ttGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACcttct                                                                     <  2:5280829/93‑1 (MQ=255)

                      gAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCttcttc                                                                   <  2:585836/93‑1 (MQ=255)

                           gTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGGCCTTCTtccacct                                                              >  1:5333261/1‑93 (MQ=255)

                           gTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacct                                                              >  2:6402756/1‑93 (MQ=255)

                            ttCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctc                                                             <  2:3069961/93‑1 (MQ=255)

                            ttCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctc                                                             <  2:6295908/93‑1 (MQ=255)

                            ttCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctc                                                             >  1:1640014/1‑93 (MQ=255)

                            ttCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctc                                                             <  1:4686896/93‑1 (MQ=255)

                                aGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctccacc                                                         >  2:5435137/1‑93 (MQ=255)

                                aGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctccacc                                                         <  1:64946/93‑1 (MQ=255)

                                aGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctccacc                                                         >  1:698055/1‑93 (MQ=255)

                                aGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTtccacctccacc                                                         <  1:3779542/93‑1 (MQ=255)

                                 gTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCAccc                                                        <  2:1816524/93‑1 (MQ=255)

                                   aCGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGa                                                      <  2:468232/93‑1 (MQ=255)

                                    cGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGac                                                     <  1:2309120/93‑1 (MQ=255)

                                     gCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGaca                                                    >  2:1465658/1‑93 (MQ=255)

                                     gCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGaca                                                    <  2:2845764/93‑1 (MQ=255)

                                       cGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGAcaca                                                  <  2:4074824/93‑1 (MQ=255)

                                       cGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGAcaca                                                  <  1:5798850/93‑1 (MQ=255)

                                       cGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGAcaca                                                  >  1:862432/1‑93 (MQ=255)

                                        gAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAg                                                 >  1:5515067/1‑93 (MQ=255)

                                         aaTACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGt                                                >  1:5892985/1‑93 (MQ=255)

                                          aTACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTg                                               <  2:1348118/93‑1 (MQ=255)

                                           tACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGc                                              >  2:289585/1‑93 (MQ=255)

                                             ccTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCgg                                            >  2:725096/1‑93 (MQ=255)

                                               tctTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCCCCTCCACCCGACACAGTGCGGaa                                          <  1:2800958/93‑1 (MQ=255)

                                               tctTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGaa                                          >  1:3663533/1‑93 (MQ=255)

                                                ctTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCCCCTCCACCCGACACAGTGCGGaaa                                         <  2:2683864/93‑1 (MQ=255)

                                                 tttGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAg                                        >  1:6072433/1‑93 (MQ=255)

                                                 tttGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAg                                        >  2:5151249/1‑93 (MQ=255)

                                                 tttGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAg                                        >  1:1935485/1‑93 (MQ=255)

                                                  ttGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGc                                       >  2:5886058/1‑93 (MQ=255)

                                                   tGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCt                                      <  2:4434656/93‑1 (MQ=255)

                                                   tGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCt                                      >  2:3727167/1‑93 (MQ=255)

                                                   tGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCt                                      >  1:4876815/1‑93 (MQ=255)

                                                    gCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTc                                     >  1:2828775/1‑93 (MQ=255)

                                                    gCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTc                                     <  2:3246923/93‑1 (MQ=255)

                                                      cAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCa                                   <  1:1347945/93‑1 (MQ=255)

                                                      cAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCa                                   >  2:2086575/1‑93 (MQ=255)

                                                       aaCGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCAt                                  >  2:5650417/1‑93 (MQ=255)

                                                       aaCGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCAt                                  <  2:5337512/93‑1 (MQ=255)

                                                       aaCGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCAt                                  >  1:5061033/1‑93 (MQ=255)

                                                        aCGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATc                                 >  1:2103550/1‑93 (MQ=255)

                                                          gccgcAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATcag                               <  2:4895112/93‑1 (MQ=255)

                                                           ccgcAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATcagc                              <  1:176420/93‑1 (MQ=255)

                                                            cgcAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATcagca                             <  1:5426807/93‑1 (MQ=255)

                                                             gcAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATcagcag                            <  1:2211319/93‑1 (MQ=255)

                                                             gcAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATcagcag                            >  1:5470610/1‑93 (MQ=255)

                                                             gcAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATcagcag                            >  2:1612638/1‑93 (MQ=255)

                                                             gcAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATcagcag                            >  2:1684753/1‑93 (MQ=255)

                                                              cAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGCCCTTCTTCCGCCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCaga                           <  1:2960948/93‑1 (MQ=255)

                                                              cAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCaga                           >  2:4398273/1‑93 (MQ=255)

                                                               aGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCagag                          >  1:4120200/1‑93 (MQ=255)

                                                               aGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCagag                          <  1:3259593/93‑1 (MQ=255)

                                                               aGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCagag                          >  2:5041952/1‑93 (MQ=255)

                                                                ggCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAgaga                         >  2:4793912/1‑93 (MQ=255)

                                                                   ttttGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTg                      <  2:6173682/93‑1 (MQ=255)

                                                                   ttttGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTg                      <  2:2530180/93‑1 (MQ=255)

                                                                    tttGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGc                     <  2:5520231/93‑1 (MQ=255)

                                                                      tGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGt                   >  1:5915136/1‑93 (MQ=255)

                                                                       gACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTc                  >  2:4496829/1‑93 (MQ=255)

                                                                       gACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTc                  <  2:5654472/93‑1 (MQ=255)

                                                                       gACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTc                  <  1:3938268/93‑1 (MQ=255)

                                                                          aGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGc               <  2:3367431/93‑1 (MQ=255)

                                                                          aGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGc               >  2:4770472/1‑93 (MQ=255)

                                                                           ggTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCa              >  1:6038489/1‑93 (MQ=255)

                                                                           ggTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCa              >  1:2632618/1‑93 (MQ=255)

                                                                            gTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCaa             <  1:1561435/93‑1 (MQ=255)

                                                                             tCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAAc            <  2:6102323/93‑1 (MQ=255)

                                                                              cATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACg           >  1:4212400/1‑93 (MQ=255)

                                                                              cATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACg           <  2:1105664/93‑1 (MQ=255)

                                                                               aTTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGt          <  2:3056625/93‑1 (MQ=255)

                                                                               aTTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGt          <  2:5941796/93‑1 (MQ=255)

                                                                                ttGCCAATCAGCGCGACCAGCGCCAGTCCTTCTTCCTCCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTa         <  1:3141271/93‑1 (MQ=255)

                                                                                 tGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGTCACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTAt        >  1:5353480/1‑93 (MQ=255)

                                                                                     aaTCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGcc    >  1:1213581/1‑93 (MQ=255)

                                                                                      aTCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACGCAGTGCGGAAAGCTCCATCAGCAGCGATTGCGTCAGCAACGCATCGccg   >  1:4794073/1‑92 (MQ=255)

                                                                                      aTCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCa   >  1:3109480/1‑93 (MQ=255)

                                                                                      aTCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCa   >  2:2933011/1‑93 (MQ=255)

                                                                                       tCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAg  <  1:3486810/93‑1 (MQ=255)

CATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAG  >  NC_000913/4229552‑4229731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGTGGA  >  NC_000913/4229549‑4229735

CGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAG                                                                                               <  SRR4302547.3388266/94‑1 (MQ=60)

 GCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCCATCAGC                                                                                              >  SRR4302547.148231/1‑94 (MQ=60)

  CCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCACTCAGCG                                                                                             >  SRR4302547.2045884/1‑94 (MQ=60)

  CCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCG                                                                                             >  SRR4302547.4970824/1‑94 (MQ=60)

  CCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCG                                                                                             <  SRR4302547.3999660/94‑1 (MQ=60)

  CCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCG                                                                                             >  SRR4302547.571946/1‑94 (MQ=60)

   CATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGC                                                                                            <  SRR4302547.2600222/94‑1 (MQ=60)

   CATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGC                                                                                            <  SRR4302547.5488967/94‑1 (MQ=60)

    ATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCG                                                                                           <  SRR4302547.3706387/94‑1 (MQ=60)

      AACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGAC                                                                                         <  SRR4302547.580310/94‑1 (MQ=60)

       ACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACC                                                                                        >  SRR4302547.258990/1‑94 (MQ=60)

       ACAAATAATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACC                                                                                        >  SRR4302547.4416741/1‑94 (MQ=60)

         AAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAG                                                                                      <  SRR4302547.4626632/94‑1 (MQ=60)

          AATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGC                                                                                     >  SRR4302547.6454302/1‑94 (MQ=60)

          AATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGC                                                                                     <  SRR4302547.5462868/94‑1 (MQ=60)

          AATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGC                                                                                     <  SRR4302547.6707230/94‑1 (MQ=60)

          AATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGC                                                                                     <  SRR4302547.687161/94‑1 (MQ=60)

           ATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCG                                                                                    >  SRR4302547.6009436/1‑94 (MQ=60)

           ATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCG                                                                                    <  SRR4302547.3178721/94‑1 (MQ=60)

            TCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGC                                                                                   <  SRR4302547.4791008/94‑1 (MQ=60)

              ATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCA                                                                                 <  SRR4302547.2582833/94‑1 (MQ=60)

                 CGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGAC                                                                              >  SRR4302547.1299994/1‑94 (MQ=60)

                  GAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACC                                                                             <  SRR4302547.6056284/94‑1 (MQ=60)

                  GAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACC                                                                             >  SRR4302547.6179134/1‑94 (MQ=60)

                   AATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCT                                                                            <  SRR4302547.3096478/94‑1 (MQ=60)

                    ATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTT                                                                           <  SRR4302547.2280176/94‑1 (MQ=60)

                    ATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTT                                                                           <  SRR4302547.6523548/94‑1 (MQ=60)

                    ATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTT                                                                           >  SRR4302547.918464/1‑94 (MQ=60)

                    ATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTT                                                                           >  SRR4302547.1119287/1‑94 (MQ=60)

                      GTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCT                                                                         >  SRR4302547.347863/1‑94 (MQ=60)

                      GTTGAACGGTTCAAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGTTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGGCCTTCT                                                                         <  SRR4302547.5057969/94‑1 (MQ=60)

                       TTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTT                                                                        <  SRR4302547.1535464/94‑1 (MQ=60)

                        TGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTC                                                                       <  SRR4302547.695857/94‑1 (MQ=60)

                         GAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCC                                                                      >  SRR4302547.5267480/1‑94 (MQ=60)

                          AACGTTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCA                                                                     <  SRR4302547.1287580/94‑1 (MQ=60)

                          AACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCA                                                                     >  SRR4302547.87135/1‑94 (MQ=60)

                           ACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCAC                                                                    <  SRR4302547.6036800/94‑1 (MQ=60)

                             GGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGGCCTTCTTCCACCT                                                                  >  SRR4302547.5443170/1‑94 (MQ=60)

                             GGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCT                                                                  <  SRR4302547.4961398/94‑1 (MQ=60)

                              GTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTC                                                                 >  SRR4302547.996681/1‑94 (MQ=60)

                              GTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTC                                                                 >  SRR4302547.1672431/1‑94 (MQ=60)

                               TTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCC                                                                <  SRR4302547.4783976/94‑1 (MQ=60)

                                TCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCA                                                               <  SRR4302547.5541782/94‑1 (MQ=60)

                                TCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCA                                                               >  SRR4302547.5585525/1‑94 (MQ=60)

                                TCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCA                                                               >  SRR4302547.172038/1‑94 (MQ=60)

                                 CCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCAC                                                              >  SRR4302547.2877844/1‑94 (MQ=60)

                                  CAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACC                                                             <  SRR4302547.5682970/94‑1 (MQ=60)

                                  CAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACC                                                             >  SRR4302547.710963/1‑94 (MQ=60)

                                   AGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCC                                                            <  SRR4302547.3856612/94‑1 (MQ=60)

                                   AGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCC                                                            >  SRR4302547.1598101/1‑94 (MQ=60)

                                   AGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCC                                                            <  SRR4302547.66165/94‑1 (MQ=60)

                                    GTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCG                                                           <  SRR4302547.892942/94‑1 (MQ=60)

                                       CGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACA                                                        <  SRR4302547.2355943/94‑1 (MQ=60)

                                         CCTAAAACCTCTTCGCCACCGCCGCACGCTTTTGACAGGTCATTGCCAAGCAGCGCGACCACCGCAAGACCTTCTTCCACCTGCACCCGAgacc                                                      >  SRR4302547.3328154/1‑90 (MQ=43)

                                         CCGAATACCTCTTTGCCAACGCCGCAGTCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACA                                                      <  SRR4302547.4315794/94‑1 (MQ=60)

                                         CCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACA                                                      >  SRR4302547.878915/1‑94 (MQ=60)

                                         CCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACA                                                      <  SRR4302547.3887360/94‑1 (MQ=60)

                                          CGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAG                                                     >  SRR4302547.5628918/1‑94 (MQ=60)

                                          CGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAG                                                     <  SRR4302547.5918804/94‑1 (MQ=60)

                                           GAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGT                                                    >  SRR4302547.6014992/1‑94 (MQ=60)

                                            AATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTG                                                   <  SRR4302547.5344010/94‑1 (MQ=60)

                                             ATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGC                                                  >  SRR4302547.1560838/1‑94 (MQ=60)

                                             ATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGC                                                  <  SRR4302547.405021/94‑1 (MQ=60)

                                             ATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGC                                                  >  SRR4302547.5805509/1‑94 (MQ=60)

                                              TACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCTCCCGACACAGTGCG                                                 >  SRR4302547.279996/1‑94 (MQ=60)

                                              TACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCG                                                 >  SRR4302547.5960052/1‑94 (MQ=60)

                                              TACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCG                                                 >  SRR4302547.5747538/1‑94 (MQ=60)

                                              TACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCG                                                 >  SRR4302547.307876/1‑94 (MQ=60)

                                              TACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCG                                                 >  SRR4302547.2811623/1‑94 (MQ=60)

                                               ACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGG                                                >  SRR4302547.5534471/1‑94 (MQ=60)

                                               ACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGG                                                >  SRR4302547.4653256/1‑94 (MQ=60)

                                                CCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGA                                               <  SRR4302547.509663/94‑1 (MQ=60)

                                                 CTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAA                                              >  SRR4302547.5912016/1‑94 (MQ=60)

                                                 CTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAA                                              >  SRR4302547.3738273/1‑94 (MQ=60)

                                                  TCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCCCCTCCACCCGACACAGTGCGGAAA                                             <  SRR4302547.2857040/94‑1 (MQ=60)

                                                  TCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAA                                             >  SRR4302547.1491008/1‑94 (MQ=60)

                                                   CTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAG                                            >  SRR4302547.6696931/1‑94 (MQ=60)

                                                   CTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAG                                            >  SRR4302547.1973872/1‑94 (MQ=60)

                                                   CTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAG                                            >  SRR4302547.6198397/1‑94 (MQ=60)

                                                   CTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAG                                            <  SRR4302547.3873420/94‑1 (MQ=60)

                                                    TTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGC                                           <  SRR4302547.6290243/94‑1 (MQ=60)

                                                     TTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCT                                          >  SRR4302547.4977856/1‑94 (MQ=60)

                                                      TGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTC                                         >  SRR4302547.923792/1‑94 (MQ=60)

                                                      TGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTC                                         >  SRR4302547.2885342/1‑94 (MQ=60)

                                                      TGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTC                                         <  SRR4302547.4401988/94‑1 (MQ=60)

                                                       GCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTTTTCCACCTCCACCCGACACAGTGCGGAAAGCTCC                                        >  SRR4302547.1992599/1‑94 (MQ=60)

                                                         CAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCAT                                      >  SRR4302547.5165481/1‑94 (MQ=60)

                                                         CAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCAT                                      >  SRR4302547.6046017/1‑94 (MQ=60)

                                                         CAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCAT                                      <  SRR4302547.1374999/94‑1 (MQ=60)

                                                         CAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCAT                                      >  SRR4302547.426254/1‑94 (MQ=60)

                                                          AACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATC                                     >  SRR4302547.2145472/1‑94 (MQ=60)

                                                          AACGCCGCAGGCTTTTGACAAGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATC                                     >  SRR4302547.6595913/1‑94 (MQ=60)

                                                             GCCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGC                                  <  SRR4302547.1177411/94‑1 (MQ=60)

                                                              CCGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCA                                 <  SRR4302547.179675/94‑1 (MQ=60)

                                                               CGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAG                                <  SRR4302547.5539022/94‑1 (MQ=60)

                                                               CGCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAG                                >  SRR4302547.5583616/1‑94 (MQ=60)

                                                                GCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGA                               <  SRR4302547.2976135/94‑1 (MQ=60)

                                                                GCAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGA                               <  SRR4302547.2255786/94‑1 (MQ=60)

                                                                 CAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGCCCTTCTTCCGCCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAG                              <  SRR4302547.3019882/94‑1 (MQ=60)

                                                                 CAGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAG                              >  SRR4302547.4203933/1‑94 (MQ=60)

                                                                 CAGCCTTTTGACAGGTCATTACCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAG                              <  SRR4302547.1735193/94‑1 (MQ=60)

                                                                  AGGCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGA                             <  SRR4302547.3324755/94‑1 (MQ=60)

                                                                    GCTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATT                           <  SRR4302547.2258077/94‑1 (MQ=60)

                                                                     CTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTG                          <  SRR4302547.1843477/94‑1 (MQ=60)

                                                                     CTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTG                          <  SRR4302547.3567869/94‑1 (MQ=60)

                                                                     CTTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTG                          <  SRR4302547.1412340/94‑1 (MQ=60)

                                                                      TTTTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGC                         <  SRR4302547.1594811/94‑1 (MQ=60)

                                                                        TTGACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGT                       >  SRR4302547.6037686/1‑94 (MQ=60)

                                                                          GACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCA                     <  SRR4302547.6023574/94‑1 (MQ=60)

                                                                          GACAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCA                     <  SRR4302547.4018347/94‑1 (MQ=60)

                                                                            CAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGC                   <  SRR4302547.836239/94‑1 (MQ=60)

                                                                            CAGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGC                   >  SRR4302547.3320835/1‑94 (MQ=60)

                                                                             AGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCA                  >  SRR4302547.6163788/1‑94 (MQ=60)

                                                                             AGGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCA                  >  SRR4302547.2685630/1‑94 (MQ=60)

                                                                              GGTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAA                 >  SRR4302547.5571407/1‑94 (MQ=60)

                                                                               GTCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAAC                <  SRR4302547.1592535/94‑1 (MQ=60)

                                                                                TCATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACG               >  SRR4302547.4298373/1‑94 (MQ=60)

                                                                                 CATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGT              <  SRR4302547.3363305/94‑1 (MQ=60)

                                                                                  ATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTA             >  SRR4302547.2681550/1‑94 (MQ=60)

                                                                                  ATTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTA             >  SRR4302547.2254786/1‑94 (MQ=60)

                                                                                   TTGCCAATCAGCGCGACCAGCGCCAGTCCTTCTTCCTCCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTAT            <  SRR4302547.3203674/94‑1 (MQ=60)

                                                                                   TTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCCCCTCCCCCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTAT            <  SRR4302547.62958/94‑1 (MQ=60)

                                                                                   TTGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGTCACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTAT            >  SRR4302547.5463872/1‑94 (MQ=60)

                                                                                    TGCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATC           <  SRR4302547.2146455/94‑1 (MQ=60)

                                                                                     GCCAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCG          <  SRR4302547.5721927/94‑1 (MQ=60)

                                                                                       CAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCC        >  SRR4302547.3280526/1‑94 (MQ=60)

                                                                                       CAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCC        >  SRR4302547.1238063/1‑94 (MQ=60)

                                                                                       CAATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCC        >  SRR4302547.3010413/1‑94 (MQ=60)

                                                                                        AATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACGCAGTGCGGAAAGCTCCATCAGCAGCGATTGCGTCAGCAACGCATCGCCG       >  SRR4302547.4893415/1‑94 (MQ=60)

                                                                                        AATCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCA       >  SRR4302547.3171104/1‑94 (MQ=60)

                                                                                        AACCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCA       <  SRR4302547.1042569/94‑1 (MQ=60)

                                                                                         ATCAGCGCGACGAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAG      >  SRR4302547.3833290/1‑94 (MQ=60)

                                                                                          TCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGT     <  SRR4302547.3557949/94‑1 (MQ=60)

                                                                                          TCAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGT     <  SRR4302547.4044071/94‑1 (MQ=60)

                                                                                           CAGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGTG    <  SRR4302547.3960618/94‑1 (MQ=60)

                                                                                            AGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGTGG   >  SRR4302547.1655825/1‑94 (MQ=60)

                                                                                            AGCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGTGG   >  SRR4302547.2599556/1‑94 (MQ=60)

                                                                                             GCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGTGGA  <  SRR4302547.6368941/94‑1 (MQ=60)

                                                                                             GCGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGTGGA  >  SRR4302547.837934/1‑94 (MQ=60)

CGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGACCTTCTTCCACCTCCACCCGACACAGTGCGGAAAGCTCCATCAGCAGAGATTGCGTCAGCAACGTATCGCCAGTGGA  >  NC_000913/4229549‑4229735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`