Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,237,776	T→C	intergenic (+467/‑128)	yjbH → / → yjbA	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,237,776	0	T	C	86.6%	627.9 / 68.6	232	intergenic (+467/‑128)	yjbH/yjbA	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (9/22); new base C (89/112); total (98/134)
Fisher's exact test for biased strand distribution p-value = 1.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01

Only 100 of 251 total aligned reads displayed.

CACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCG  >  NC_000913/4237687‑4237865

  ccTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggcaggta                                                                                      <  1:3069171/93‑1 (MQ=255)

     gAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTatat                                                                                   <  2:5440259/93‑1 (MQ=255)

      aaTGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGGATATc                                                                                  >  1:5716318/1‑93 (MQ=255)

       aTGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATcc                                                                                 >  1:1280803/1‑93 (MQ=255)

       aTGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATcc                                                                                 <  2:1328968/93‑1 (MQ=255)

        tGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCCGGCGCGGCTTATCCCGCCTACGGGCAGGTATATCCg                                                                                >  2:3503593/1‑93 (MQ=255)

        tGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCg                                                                                >  2:1362546/1‑93 (MQ=255)

         gggTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCgg                                                                               <  1:52667/93‑1 (MQ=255)

          ggTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGc                                                                              >  2:3523673/1‑93 (MQ=255)

              aTTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTtg                                                                          <  2:6137702/93‑1 (MQ=255)

                 tttGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTtggtg                                                                       <  1:6027310/93‑1 (MQ=255)

                  ttGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCTGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtggtgg                                                                      <  2:4397579/93‑1 (MQ=255)

                   tGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGa                                                                     <  2:2900317/93‑1 (MQ=255)

                    gAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAg                                                                    >  1:6198425/1‑93 (MQ=255)

                    gAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAg                                                                    <  2:5859993/93‑1 (MQ=255)

                     aaTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAgg                                                                   <  1:5869444/93‑1 (MQ=255)

                     aaTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGCCCTACGGGCAGGCATATCCGGCTTTGGTGGAgg                                                                   >  1:1008610/1‑93 (MQ=255)

                      aTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAggg                                                                  >  2:156252/1‑92 (MQ=255)

                      aTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGgc                                                                  >  1:2991133/1‑93 (MQ=255)

                      aTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGgc                                                                  <  2:6641701/93‑1 (MQ=255)

                      aTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGgc                                                                  <  2:1878794/93‑1 (MQ=255)

                      aTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGgc                                                                  <  1:4554140/93‑1 (MQ=255)

                      aTTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGGATATCCGGCTTTGGTGGAGgc                                                                  >  2:3356782/1‑93 (MQ=255)

                         aCCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGgcgcg                                                               <  2:3373482/93‑1 (MQ=255)

                         aCCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCCACGGGTAGGGATATCCGGCTTTGGTGGAGgcgcg                                                               >  1:3929389/1‑93 (MQ=255)

                          ccGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGgcgcgc                                                              <  2:1953757/93‑1 (MQ=255)

                           cGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCt                                                             >  2:6309108/1‑93 (MQ=255)

                           cGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCt                                                             >  1:5046270/1‑93 (MQ=255)

                            ggCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGCGCAGGTATATCCAGCTTTGGTGGAGGCGCGCTc                                                            >  1:6356292/1‑93 (MQ=255)

                              cTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGGCAAGCGCGGCTTATCCGGCCTACGGGTAGGTGTATTCGGCTTTGGTGGGGGGGCGCTCCa                                                          >  2:4109803/1‑93 (MQ=255)

                              cTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCa                                                          >  2:3772797/1‑93 (MQ=255)

                                ttGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCaaa                                                        <  2:5865559/93‑1 (MQ=255)

                                 tGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAAt                                                       <  1:184497/93‑1 (MQ=255)

                                 tGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAAt                                                       <  1:294834/93‑1 (MQ=255)

                                  ggTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATc                                                      >  2:6056040/1‑93 (MQ=255)

                                   gTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATcc                                                     <  2:4677250/93‑1 (MQ=255)

                                    tGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCa                                                    <  2:3286169/93‑1 (MQ=255)

                                     gCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAg                                                   <  2:360220/93‑1 (MQ=255)

                                     gCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAg                                                   <  2:858114/93‑1 (MQ=255)

                                      cGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAgg                                                  <  1:167643/93‑1 (MQ=255)

                                      cGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAgg                                                  <  1:5975381/93‑1 (MQ=255)

                                       ggTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGt                                                 <  2:3620688/93‑1 (MQ=255)

                                       ggTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGt                                                 <  1:5592370/93‑1 (MQ=255)

                                         tttGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTg                                               >  1:3735041/1‑93 (MQ=255)

                                          ttGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGa                                              <  2:865411/93‑1 (MQ=255)

                                            gTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAc                                            <  1:3170484/93‑1 (MQ=255)

                                            gTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAc                                            >  1:4381042/1‑93 (MQ=255)

                                             tCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACa                                           <  2:4365074/93‑1 (MQ=255)

                                              cTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaa                                          >  1:3226317/1‑93 (MQ=255)

                                              cTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaa                                          >  2:3905121/1‑93 (MQ=255)

                                               ttGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaaa                                         >  1:837342/1‑93 (MQ=255)

                                                 gCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAAc                                       <  1:2702070/93‑1 (MQ=255)

                                                 gCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAAc                                       <  1:478502/93‑1 (MQ=255)

                                                 gCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAAc                                       <  1:1651959/93‑1 (MQ=255)

                                                   cGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAt                                     <  2:6455932/93‑1 (MQ=255)

                                                   cGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAt                                     >  2:2416580/1‑93 (MQ=255)

                                                    ggATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATa                                    >  1:1476419/1‑93 (MQ=255)

                                                    ggATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATa                                    >  2:5083368/1‑93 (MQ=255)

                                                    ggATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATa                                    >  2:1429407/1‑93 (MQ=255)

                                                     gATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATac                                   <  1:2643111/93‑1 (MQ=255)

                                                     gATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAACACATac                                   >  2:2857354/1‑93 (MQ=255)

                                                     gATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATac                                   <  2:5331196/93‑1 (MQ=255)

                                                      aTGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATaca                                  <  1:1938875/93‑1 (MQ=255)

                                                       tGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATacac                                 >  2:4796755/1‑93 (MQ=255)

                                                        gcgcCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAcaca                                <  2:2843239/93‑1 (MQ=255)

                                                         cgccgcCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACaa                               >  1:2802541/1‑93 (MQ=255)

                                                          gccgccAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACaaa                              >  2:2443436/1‑93 (MQ=255)

                                                           ccgccAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACaaaa                             >  1:2155343/1‑93 (MQ=255)

                                                            cgccAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACaaaaa                            >  2:2101753/1‑93 (MQ=255)

                                                             gccAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACGTACACaaaaaa                           >  1:6424198/1‑93 (MQ=255)

                                                             gccAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACaaaaaa                           >  2:1113546/1‑93 (MQ=255)

                                                              ccAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAat                          >  2:4566840/1‑93 (MQ=255)

                                                               cAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAata                         >  2:6206208/1‑93 (MQ=255)

                                                               cAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAata                         >  1:3911856/1‑93 (MQ=255)

                                                               cAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAata                         <  2:4157296/93‑1 (MQ=255)

                                                                aGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAatat                        >  1:4538961/1‑93 (MQ=255)

                                                                 ggCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAAtata                       <  1:1603518/93‑1 (MQ=255)

                                                                 ggCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAAtata                       >  2:639640/1‑93 (MQ=255)

                                                                 ggCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAAtata                       <  2:4500730/93‑1 (MQ=255)

                                                                  gcgcGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAg                      >  1:6511514/1‑93 (MQ=255)

                                                                    gcgGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAt                    >  1:4161243/1‑93 (MQ=255)

                                                                    gcgGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAt                    >  1:794569/1‑93 (MQ=255)

                                                                     cgGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtc                   <  1:5653620/93‑1 (MQ=255)

                                                                      ggCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtct                  >  1:5194109/1‑93 (MQ=255)

                                                                      ggCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtct                  >  1:205580/1‑93 (MQ=255)

                                                                      ggCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtct                  >  1:2265475/1‑93 (MQ=255)

                                                                       gCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtctc                 >  2:3237302/1‑93 (MQ=255)

                                                                       gCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtctc                 <  1:5549173/93‑1 (MQ=255)

                                                                          tATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAATAAAACATACACAAAAAATATAGATCTCCGt              >  1:3353819/1‑93 (MQ=255)

                                                                            tCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTca            >  1:6095215/1‑93 (MQ=255)

                                                                            tCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTca            >  2:5195820/1‑93 (MQ=255)

                                                                              cGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTcaca          >  2:578395/1‑93 (MQ=255)

                                                                               ggCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAt         >  1:4017914/1‑93 (MQ=255)

                                                                                 ccTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAttt       <  2:2657735/93‑1 (MQ=255)

                                                                                 ccTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAttt       >  2:5895788/1‑93 (MQ=255)

                                                                                  cTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAtttt      <  1:3521946/93‑1 (MQ=255)

                                                                                  cTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAtttt      <  2:1714091/93‑1 (MQ=255)

                                                                                   tACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAttttt     <  1:252538/93‑1 (MQ=255)

                                                                                   tACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAttttt     <  1:3432798/93‑1 (MQ=255)

                                                                                      gggCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCg  <  1:5013976/93‑1 (MQ=255)

CACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCG  >  NC_000913/4237687‑4237865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTA  >  NC_000913/4237683‑4237868

GAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGC                                                                                              <  SRR4302547.6163889/94‑1 (MQ=60)

 AATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCA                                                                                             <  SRR4302547.608340/94‑1 (MQ=60)

     ACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTA                                                                                         <  SRR4302547.6320278/94‑1 (MQ=60)

      CCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTAT                                                                                        >  SRR4302547.4446336/1‑94 (MQ=60)

      CCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTAT                                                                                        <  SRR4302547.3130164/94‑1 (MQ=60)

      CCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTAT                                                                                        <  SRR4302547.3822350/94‑1 (MQ=60)

        TGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATAT                                                                                      >  SRR4302547.4220679/1‑94 (MQ=60)

         GAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATC                                                                                     <  SRR4302547.2275032/94‑1 (MQ=60)

         GAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGGATATC                                                                                     >  SRR4302547.5834377/1‑94 (MQ=60)

          AATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCC                                                                                    >  SRR4302547.1306587/1‑94 (MQ=60)

          AATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCC                                                                                    >  SRR4302547.735544/1‑94 (MQ=60)

           ATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATTCG                                                                                   >  SRR4302547.3614214/1‑94 (MQ=60)

           ATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCG                                                                                   <  SRR4302547.3493326/94‑1 (MQ=60)

           ATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCG                                                                                   >  SRR4302547.2967829/1‑94 (MQ=60)

             GGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGC                                                                                 <  SRR4302547.53659/94‑1 (MQ=60)

              GGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCT                                                                                >  SRR4302547.761844/1‑94 (MQ=60)

              GGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCT                                                                                <  SRR4302547.6126131/94‑1 (MQ=60)

              GGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCT                                                                                <  SRR4302547.2776136/94‑1 (MQ=60)

              GGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCT                                                                                <  SRR4302547.2774650/94‑1 (MQ=60)

               GTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGGCAGGCGCGGCTTATCCGGCCTACGGGCAGGGATATCCGGCTT                                                                               >  SRR4302547.2500289/1‑94 (MQ=60)

               GTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTT                                                                               <  SRR4302547.4296291/94‑1 (MQ=60)

               GTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTT                                                                               <  SRR4302547.6398788/94‑1 (MQ=60)

                TGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTT                                                                              <  SRR4302547.4642538/94‑1 (MQ=60)

                 GATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTG                                                                             <  SRR4302547.5119175/94‑1 (MQ=60)

                   TTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGT                                                                           <  SRR4302547.300620/94‑1 (MQ=60)

                     TTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGG                                                                         <  SRR4302547.6152393/94‑1 (MQ=60)

                     TTTGAATCGCCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGGGTTGGTGG                                                                         <  SRR4302547.3350257/94‑1 (MQ=60)

                      TTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGA                                                                        <  SRR4302547.5717154/94‑1 (MQ=60)

                       TGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAG                                                                       <  SRR4302547.2294666/94‑1 (MQ=60)

                       TGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAG                                                                       >  SRR4302547.6327115/1‑94 (MQ=60)

                        GAATTACCTGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGTCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGG                                                                      <  SRR4302547.3927850/94‑1 (MQ=60)

                        GAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGCCCTACGGGCAGGCATATCCGGCTTTGGTGGAGG                                                                      >  SRR4302547.1028304/1‑94 (MQ=60)

                         AATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGC                                                                     <  SRR4302547.6555495/94‑1 (MQ=60)

                         AATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGC                                                                     <  SRR4302547.5990926/94‑1 (MQ=60)

                         AATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGC                                                                     >  SRR4302547.3050641/1‑94 (MQ=60)

                          ATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCG                                                                    <  SRR4302547.4648344/94‑1 (MQ=60)

                           TTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGC                                                                   <  SRR4302547.1385401/94‑1 (MQ=60)

                           TTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGGATATCCGGCTTTGGTGGAGGGGC                                                                   >  SRR4302547.2632345/1‑94 (MQ=60)

                            TACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCG                                                                  <  SRR4302547.611649/94‑1 (MQ=60)

                            TACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCG                                                                  >  SRR4302547.1712255/1‑94 (MQ=60)

                            TACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCCACGGGTAGGGATATCCGGCTTTGGTGGAGGCGCG                                                                  >  SRR4302547.4009308/1‑94 (MQ=60)

                              CCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCT                                                                >  SRR4302547.2019573/1‑94 (MQ=60)

                              CCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCT                                                                >  SRR4302547.5150464/1‑94 (MQ=60)

                               CGGCTTTGGTGGTGTTTGTCTTGCTGGATGCGCCGCTAGGCGCGGCTTATCCGGCATACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCGC                                                               <  SRR4302547.1444800/94‑1 (MQ=60)

                               CGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGCGCAGGTATATCCAGCTTTGGTGGAGGCGCGCTC                                                               >  SRR4302547.6488815/1‑94 (MQ=60)

                                 GCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCA                                                             <  SRR4302547.2156513/94‑1 (MQ=60)

                                 GCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCA                                                             <  SRR4302547.1635541/94‑1 (MQ=60)

                                 GCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCA                                                             <  SRR4302547.6019171/94‑1 (MQ=60)

                                  CTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAA                                                            >  SRR4302547.5222704/1‑94 (MQ=60)

                                   TTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAA                                                           >  SRR4302547.5688604/1‑94 (MQ=60)

                                    TTGGTGCGGTTTGTCTTGCCGGATGCGCCGGCCGGGGCGGCCTATCCCGGCTTCGGGCAGGGATATTCGGCTTTTGTGGAGGCGCGCTCCAAAT                                                          >  SRR4302547.133262/1‑94 (MQ=32)

                                     TGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATC                                                         <  SRR4302547.187959/94‑1 (MQ=60)

                                     TGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATC                                                         <  SRR4302547.300314/94‑1 (MQ=60)

                                      GTTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCC                                                        <  SRR4302547.5894362/94‑1 (MQ=60)

                                       GTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCA                                                       <  SRR4302547.1703711/94‑1 (MQ=60)

                                         GCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGG                                                     <  SRR4302547.3330025/94‑1 (MQ=60)

                                          CGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGT                                                    <  SRR4302547.170726/94‑1 (MQ=60)

                                          CGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGT                                                    <  SRR4302547.6099321/94‑1 (MQ=60)

                                           GGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTT                                                   >  SRR4302547.5951197/1‑94 (MQ=60)

                                           GGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTT                                                   <  SRR4302547.5707738/94‑1 (MQ=60)

                                            GTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATTCGGCCTACGGGTAGGGATATGCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTT                                                  >  SRR4302547.3751697/1‑94 (MQ=60)

                                            GTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGTGCAGGTATATCCGGCTTTAGTTGAGGGCCGCTCCAAATCCAGGTTG                                                  >  SRR4302547.2020353/1‑94 (MQ=60)

                                            GTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTG                                                  >  SRR4302547.3811305/1‑94 (MQ=60)

                                               TGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC                                               >  SRR4302547.4471126/1‑94 (MQ=60)

                                                GTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA                                              <  SRR4302547.3233576/94‑1 (MQ=60)

                                                 TCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA                                             >  SRR4302547.3290710/1‑94 (MQ=60)

                                                  CTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAA                                            >  SRR4302547.853323/1‑94 (MQ=60)

                                                   TTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAA                                           <  SRR4302547.1871046/94‑1 (MQ=60)

                                                    TGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAAC                                          >  SRR4302547.2022214/1‑94 (MQ=60)

                                                     GCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACA                                         <  SRR4302547.2756301/94‑1 (MQ=60)

                                                     GCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACA                                         <  SRR4302547.487290/94‑1 (MQ=60)

                                                     GCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACA                                         <  SRR4302547.6170539/94‑1 (MQ=60)

                                                     GCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACA                                         <  SRR4302547.1684554/94‑1 (MQ=60)

                                                      CCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT                                        <  SRR4302547.4006599/94‑1 (MQ=60)

                                                       CGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATA                                       >  SRR4302547.1505910/1‑94 (MQ=60)

                                                       CGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATA                                       <  SRR4302547.3277277/94‑1 (MQ=60)

                                                         GATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACA                                     <  SRR4302547.2696303/94‑1 (MQ=60)

                                                          ATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACAC                                    <  SRR4302547.2693596/94‑1 (MQ=60)

                                                          ATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACAC                                    <  SRR4302547.1977331/94‑1 (MQ=60)

                                                           TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA                                   <  SRR4302547.1268539/94‑1 (MQ=60)

                                                            GCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAA                                  >  SRR4302547.2858646/1‑94 (MQ=60)

                                                             CGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAA                                 <  SRR4302547.4590681/94‑1 (MQ=60)

                                                             CGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAA                                 >  SRR4302547.3180519/1‑94 (MQ=60)

                                                              GCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAA                                >  SRR4302547.2198388/1‑94 (MQ=60)

                                                              GCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAA                                <  SRR4302547.4970390/94‑1 (MQ=60)

                                                               CCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAA                               >  SRR4302547.4077646/1‑94 (MQ=60)

                                                                CGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACGTACACAAAAAA                              >  SRR4302547.6558128/1‑94 (MQ=60)

                                                                  CCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATA                            >  SRR4302547.830001/1‑94 (MQ=60)

                                                                  CCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATA                            >  SRR4302547.3991402/1‑94 (MQ=60)

                                                                  CCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATA                            >  SRR4302547.3046182/1‑94 (MQ=60)

                                                                   CAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATAT                           <  SRR4302547.3531018/94‑1 (MQ=60)

                                                                   CAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATAT                           <  SRR4302547.3096982/94‑1 (MQ=60)

                                                                   CAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATAT                           >  SRR4302547.4632777/1‑94 (MQ=60)

                                                                    AGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATA                          <  SRR4302547.5005914/94‑1 (MQ=60)

                                                                     GGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAG                         >  SRR4302547.6647078/1‑94 (MQ=60)

                                                                     GGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAG                         <  SRR4302547.880115/94‑1 (MQ=60)

                                                                     GGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAG                         <  SRR4302547.1635323/94‑1 (MQ=60)

                                                                     GGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAG                         <  SRR4302547.5442226/94‑1 (MQ=60)

                                                                      GCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGA                        >  SRR4302547.5309475/1‑94 (MQ=60)

                                                                       CGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAT                       >  SRR4302547.4246020/1‑94 (MQ=60)

                                                                       CGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAT                       >  SRR4302547.809603/1‑94 (MQ=60)

                                                                       CGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAT                       >  SRR4302547.5830111/1‑94 (MQ=60)

                                                                        GCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATC                      <  SRR4302547.160592/94‑1 (MQ=60)

                                                                         CGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCT                     >  SRR4302547.209438/1‑94 (MQ=60)

                                                                         CGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCT                     >  SRR4302547.2311266/1‑94 (MQ=60)

                                                                         CGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCT                     <  SRR4302547.5770335/94‑1 (MQ=60)

                                                                         CGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCT                     >  SRR4302547.5301007/1‑94 (MQ=60)

                                                                          GGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTC                    <  SRR4302547.5611367/94‑1 (MQ=60)

                                                                          GGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTC                    >  SRR4302547.4645146/1‑94 (MQ=60)

                                                                           GCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCC                   >  SRR4302547.5280265/1‑94 (MQ=60)

                                                                           GCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCC                   <  SRR4302547.4697198/94‑1 (MQ=60)

                                                                           GCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCC                   <  SRR4302547.5663671/94‑1 (MQ=60)

                                                                             TTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAATAAAACATACACAAAAAATATAGATCTCCGT                 >  SRR4302547.3421837/1‑94 (MQ=60)

                                                                               ATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCA               >  SRR4302547.1970283/1‑94 (MQ=60)

                                                                               ATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCA               >  SRR4302547.6221659/1‑94 (MQ=60)

                                                                                 CCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACA             >  SRR4302547.6281454/1‑94 (MQ=60)

                                                                                 CCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACA             >  SRR4302547.6502684/1‑94 (MQ=60)

                                                                                  CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAT            <  SRR4302547.5720216/94‑1 (MQ=60)

                                                                                  CGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAT            >  SRR4302547.4099558/1‑94 (MQ=60)

                                                                                   GGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATT           <  SRR4302547.3586125/94‑1 (MQ=60)

                                                                                      CTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTT        <  SRR4302547.3593838/94‑1 (MQ=60)

                                                                                      CTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTT        <  SRR4302547.131060/94‑1 (MQ=60)

                                                                                      CTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTT        >  SRR4302547.3337354/1‑94 (MQ=60)

                                                                                       TACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTG       <  SRR4302547.257262/94‑1 (MQ=60)

                                                                                       TACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTG       >  SRR4302547.4096989/1‑94 (MQ=60)

                                                                                       TACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTG       <  SRR4302547.3502758/94‑1 (MQ=60)

                                                                                       TACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTG       <  SRR4302547.1657786/94‑1 (MQ=60)

                                                                                       TACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTG       <  SRR4302547.3177090/94‑1 (MQ=60)

                                                                                       TACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATAAAGATCTCCGTCACATTTTTG       <  SRR4302547.6599720/94‑1 (MQ=60)

                                                                                          GGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGT    <  SRR4302547.5117616/94‑1 (MQ=60)

                                                                                          GGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGT    >  SRR4302547.2411058/1‑94 (MQ=60)

                                                                                           GGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTT   >  SRR4302547.2670237/1‑94 (MQ=60)

                                                                                           GGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTT   >  SRR4302547.2756483/1‑94 (MQ=60)

                                                                                           GGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTT   <  SRR4302547.5409351/94‑1 (MQ=60)

                                                                                           GGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTT   >  SRR4302547.5415666/1‑94 (MQ=60)

                                                                                            GCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTA  <  SRR4302547.2396452/94‑1 (MQ=60)

GAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTA  >  NC_000913/4237683‑4237868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`