Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,499,168	C→T	intergenic (+11/+503)	yjgZ → / ← yi41	hypothetical protein/IS4 hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,499,168	0	C	T	88.0%	784.4 / 67.8	258	intergenic (+11/+503)	yjgZ/yi41	hypothetical protein/IS4 hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (19/12); new base T (124/103); total (143/115)
Fisher's exact test for biased strand distribution p-value = 5.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.67e-01

Only 100 of 266 total aligned reads displayed.

GTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCT  >  NC_000913/4499077‑4499259

 tCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCg                                                                                           <  2:6354157/93‑1 (MQ=255)

 tCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCg                                                                                           <  2:303189/93‑1 (MQ=255)

 tCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCg                                                                                           >  2:2473079/1‑93 (MQ=255)

    tGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCa                                                                                        >  2:2042651/1‑93 (MQ=255)

    tGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCa                                                                                        >  1:215268/1‑93 (MQ=255)

    tGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCa                                                                                        <  2:618962/93‑1 (MQ=255)

     gACGCGTCTGCCGGAGTGGCCGGAGGAGAGGCTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAg                                                                                       >  1:3905060/1‑93 (MQ=255)

        gcgTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGgtg                                                                                    <  1:808943/93‑1 (MQ=255)

        gcgTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGgtg                                                                                    <  2:669425/93‑1 (MQ=255)

        gcgTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGgtg                                                                                    >  2:2230561/1‑93 (MQ=255)

         cgTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGgtgt                                                                                   <  1:1131759/93‑1 (MQ=255)

           tCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGttt                                                                                 <  2:6404338/93‑1 (MQ=255)

             tGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTtgt                                                                               <  1:5206904/93‑1 (MQ=255)

              gCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTtgtg                                                                              >  1:713651/1‑93 (MQ=255)

               ccGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGc                                                                             <  1:2837595/93‑1 (MQ=255)

                cGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCa                                                                            <  2:1838028/93‑1 (MQ=255)

                cGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCa                                                                            >  1:3731621/1‑93 (MQ=255)

                 ggAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCAc                                                                           <  2:1346642/93‑1 (MQ=255)

                 ggAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCAc                                                                           <  1:408148/93‑1 (MQ=255)

                 ggAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCAc                                                                           <  1:4235526/93‑1 (MQ=255)

                      ggCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGc                                                                      >  2:1193575/1‑93 (MQ=255)

                       gCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGcc                                                                     >  2:1969025/1‑93 (MQ=255)

                        ccGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCa                                                                    >  2:851448/1‑93 (MQ=255)

                        ccGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGGGTTTGTGCACCGGGCCa                                                                    >  1:2013066/1‑93 (MQ=255)

                         cGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCAt                                                                   <  2:6296012/93‑1 (MQ=255)

                          ggaggaGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATa                                                                  >  2:2879510/1‑93 (MQ=255)

                          ggaggaGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATa                                                                  >  2:5240724/1‑93 (MQ=255)

                          ggaggaGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATa                                                                  >  2:970290/1‑93 (MQ=255)

                          ggaggaGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATa                                                                  >  1:4202386/1‑93 (MQ=255)

                          ggaggaGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATa                                                                  <  2:3798770/93‑1 (MQ=255)

                             ggagAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAAcc                                                               <  2:6144191/93‑1 (MQ=255)

                                   gTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGt                                                         >  2:5056912/1‑93 (MQ=255)

                                     tGGCTGAGTTACTGCCTCTTGAGGTCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTg                                                       <  2:5624037/93‑1 (MQ=255)

                                     tGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTg                                                       <  2:3388790/93‑1 (MQ=255)

                                      ggCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTgg                                                      >  1:4426681/1‑93 (MQ=255)

                                      ggCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTgg                                                      >  1:5867489/1‑93 (MQ=255)

                                      ggCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTgg                                                      <  1:1805707/93‑1 (MQ=255)

                                        cTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGa                                                    <  2:4230143/93‑1 (MQ=255)

                                         tGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTTCACCGGGCCATAACCTGCAGTTGGGaa                                                   >  2:5869867/1‑93 (MQ=255)

                                         tGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGaa                                                   <  2:6036073/93‑1 (MQ=255)

                                         tGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGaa                                                   >  2:2389880/1‑93 (MQ=255)

                                         tGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGaa                                                   >  2:2348521/1‑93 (MQ=255)

                                         tGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGaa                                                   <  1:4761064/93‑1 (MQ=255)

                                           aGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAAtt                                                 <  1:230145/93‑1 (MQ=255)

                                            gTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTg                                                >  1:5784368/1‑93 (MQ=255)

                                            gTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTg                                                >  1:2828121/1‑93 (MQ=255)

                                             ttACTGCCTCTTGAGGGGTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGa                                               <  2:3163840/93‑1 (MQ=255)

                                             ttACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGa                                               <  1:248216/93‑1 (MQ=255)

                                             ttACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGa                                               <  2:4341934/93‑1 (MQ=255)

                                              tACTGCCTCTTGAGGGCTTTGCCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGaa                                              <  1:1117249/93‑1 (MQ=255)

                                              tACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGaa                                              <  2:3688427/93‑1 (MQ=255)

                                                 tGCCTCTTGAGGGCTTTCCCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCTTAACCTGCAGTTGGGAATTGAACGc                                           <  1:144133/93‑1 (MQ=255)

                                                  gCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGcc                                          >  2:1024584/1‑93 (MQ=255)

                                                  gCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGcc                                          >  1:1545772/1‑93 (MQ=255)

                                                   ccTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCt                                         <  1:1873434/93‑1 (MQ=255)

                                                    ctctTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTg                                        >  2:17516/1‑93 (MQ=255)

                                                    ctctTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTg                                        >  2:5988111/1‑93 (MQ=255)

                                                    ctctTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGCGCCATAACCTGCAGTTGGGAATTGAACGCCTg                                        >  1:3337615/1‑93 (MQ=255)

                                                     tctTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGa                                       >  1:1227550/1‑93 (MQ=255)

                                                       ttGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGaca                                     >  2:1669827/1‑93 (MQ=255)

                                                       ttGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGaca                                     >  1:5837171/1‑93 (MQ=255)

                                                        tGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGacaa                                    >  1:3955969/1‑93 (MQ=255)

                                                        tGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGacaa                                    >  1:4940245/1‑93 (MQ=255)

                                                          aGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGacaaca                                  <  1:3813783/93‑1 (MQ=255)

                                                           gggCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAg                                 <  2:5683255/93‑1 (MQ=255)

                                                            ggCTTTACGTTCTTCGGGTAAGTGATACCTGTCGTCAGGCGGTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAgg                                >  1:6499476/1‑93 (MQ=255)

                                                             gCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGa                               <  2:2532510/93‑1 (MQ=255)

                                                              cTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGaa                              <  2:6486451/93‑1 (MQ=255)

                                                              cTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGaa                              <  2:5834191/93‑1 (MQ=255)

                                                               tttACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGaaa                             >  1:1030499/1‑93 (MQ=255)

                                                               tttACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGaaa                             <  1:6340918/93‑1 (MQ=255)

                                                                 tACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATg                           >  2:5160553/1‑93 (MQ=255)

                                                                  aCCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGa                          <  1:3160098/93‑1 (MQ=255)

                                                                   ccTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAg                         >  2:5966536/1‑93 (MQ=255)

                                                                    cttctgCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGc                        <  1:594129/93‑1 (MQ=255)

                                                                    ctgcttcGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGc                        <  1:1303915/90‑1 (MQ=255)

                                                                     ttcttcGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCt                       <  1:552636/93‑1 (MQ=255)

                                                                     ttcttcGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCt                       <  2:5448850/93‑1 (MQ=255)

                                                                      tcttcGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTa                      >  1:5443405/1‑93 (MQ=255)

                                                                        ttcGGGTAAGTGATACCTGTCGTCAGTTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTaga                    <  1:6266675/93‑1 (MQ=255)

                                                                        ttcGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTaga                    >  1:3874412/1‑93 (MQ=255)

                                                                         tcGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTagag                   <  2:3188395/93‑1 (MQ=255)

                                                                         tcGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTagag                   >  2:575479/1‑93 (MQ=255)

                                                                           gggTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCa                 <  2:4801219/93‑1 (MQ=255)

                                                                            ggTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAg                >  1:6099446/1‑93 (MQ=255)

                                                                            ggTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAg                <  1:1698861/93‑1 (MQ=255)

                                                                            ggTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAg                >  1:53669/1‑93 (MQ=255)

                                                                             gTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCGGt               >  2:5733224/1‑93 (MQ=255)

                                                                               aaGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTaa             >  1:4479731/1‑93 (MQ=255)

                                                                               aaGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTaa             >  2:652603/1‑93 (MQ=255)

                                                                                aGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTaaa            <  2:4053918/93‑1 (MQ=255)

                                                                                aGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTaaa            <  1:3032115/93‑1 (MQ=255)

                                                                                 gTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGACTGACAACAGGAAATGAGCTAGAGCAGTAAac           >  2:4706782/1‑93 (MQ=255)

                                                                                  tGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAaca          <  1:5606247/93‑1 (MQ=255)

                                                                                   gATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACGGGAAATGAGCTAGAGCAGTAAacac         <  2:451542/93‑1 (MQ=255)

                                                                                   gATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAacac         <  2:807359/93‑1 (MQ=255)

                                                                                        cTGTCGTCCGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCggg    >  1:6464803/1‑93 (MQ=255)

                                                                                        cTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCggg    >  1:55942/1‑93 (MQ=255)

                                                                                         tGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGc   >  1:4592068/1‑93 (MQ=255)

                                                                                          gCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCt  >  2:5516093/1‑93 (MQ=255)

GTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCT  >  NC_000913/4499077‑4499259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCTGA  >  NC_000913/4499076‑4499261

CGTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTC                                                                                              >  SRR4302547.1281269/1‑94 (MQ=60)

 GTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCG                                                                                             >  SRR4302547.503912/1‑94 (MQ=60)

 GTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCG                                                                                             <  SRR4302547.6725690/94‑1 (MQ=60)

 GTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCG                                                                                             <  SRR4302547.5527/94‑1 (MQ=60)

   CCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTC                                                                                           >  SRR4302547.2165665/1‑94 (MQ=60)

    CTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCA                                                                                          <  SRR4302547.1722044/94‑1 (MQ=60)

    CTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCA                                                                                          >  SRR4302547.219325/1‑94 (MQ=60)

    CTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCA                                                                                          >  SRR4302547.5458375/1‑94 (MQ=60)

     TGACGCGTCTGCCGGAGTGGCCGGAGGCGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGGTACCTGTCGTCAG                                                                                         >  SRR4302547.1261642/1‑94 (MQ=60)

     TGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAG                                                                                         <  SRR4302547.3093052/94‑1 (MQ=60)

     TGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAG                                                                                         >  SRR4302547.5743414/1‑94 (MQ=60)

     TGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGCTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAG                                                                                         >  SRR4302547.3984470/1‑94 (MQ=60)

      GACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGG                                                                                        <  SRR4302547.4415788/94‑1 (MQ=60)

        CGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTG                                                                                      <  SRR4302547.1564339/94‑1 (MQ=60)

         GCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGT                                                                                     <  SRR4302547.824269/94‑1 (MQ=60)

          CGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTT                                                                                    <  SRR4302547.1154601/94‑1 (MQ=60)

           GTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTT                                                                                   <  SRR4302547.4634806/94‑1 (MQ=60)

           GTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTT                                                                                   >  SRR4302547.4563800/1‑94 (MQ=60)

            TCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTG                                                                                  >  SRR4302547.4726859/1‑94 (MQ=60)

              TGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTG                                                                                >  SRR4302547.726858/1‑94 (MQ=60)

              TGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTG                                                                                <  SRR4302547.5314051/94‑1 (MQ=60)

                CCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCA                                                                              <  SRR4302547.2894314/94‑1 (MQ=60)

                CCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCA                                                                              >  SRR4302547.3282484/1‑94 (MQ=60)

                CCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCA                                                                              >  SRR4302547.3807813/1‑94 (MQ=60)

                 CGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCAC                                                                             <  SRR4302547.2511975/94‑1 (MQ=60)

                 CGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCAC                                                                             >  SRR4302547.3543574/1‑94 (MQ=60)

                  GGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACC                                                                            <  SRR4302547.6405818/94‑1 (MQ=60)

                  GGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACC                                                                            <  SRR4302547.4322118/94‑1 (MQ=60)

                  GGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACC                                                                            <  SRR4302547.415721/94‑1 (MQ=60)

                   GAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCG                                                                           <  SRR4302547.6614665/94‑1 (MQ=60)

                     GTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGG                                                                         <  SRR4302547.1365580/94‑1 (MQ=60)

                     GTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGG                                                                         >  SRR4302547.5579035/1‑94 (MQ=60)

                     GTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGG                                                                         <  SRR4302547.4971185/94‑1 (MQ=60)

                       GGCCGGAAGAGAGGTTGGCTGACTTACTGCCTCGTTATGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGAC                                                                       >  SRR4302547.4964496/1‑94 (MQ=60)

                        GCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGGGTTTGTGCACCGGGCCA                                                                      >  SRR4302547.2053115/1‑94 (MQ=60)

                          CGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATA                                                                    >  SRR4302547.4288114/1‑94 (MQ=60)

                             AGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACC                                                                 <  SRR4302547.5958807/94‑1 (MQ=60)

                             AGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACC                                                                 >  SRR4302547.3036654/1‑94 (MQ=60)

                              GGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCT                                                                >  SRR4302547.3999671/1‑94 (MQ=60)

                              GGAGAGGTGGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCT                                                                <  SRR4302547.164681/94‑1 (MQ=60)

                                 GAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCA                                                             >  SRR4302547.3987452/1‑94 (MQ=60)

                                  AGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTACACCGGGCCATAACCTGCAG                                                            <  SRR4302547.6621458/94‑1 (MQ=60)

                                      TGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGG                                                        >  SRR4302547.5988932/1‑94 (MQ=60)

                                      TGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGG                                                        >  SRR4302547.4518155/1‑94 (MQ=60)

                                      TGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGG                                                        >  SRR4302547.5873342/1‑94 (MQ=60)

                                       GGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGG                                                       >  SRR4302547.3970672/1‑94 (MQ=60)

                                       GGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGG                                                       <  SRR4302547.1841405/94‑1 (MQ=60)

                                        GCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGA                                                      >  SRR4302547.2723982/1‑94 (MQ=60)

                                         CTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAA                                                     >  SRR4302547.2727808/1‑94 (MQ=60)

                                          TGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAAT                                                    <  SRR4302547.4859708/94‑1 (MQ=60)

                                           GAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATT                                                   <  SRR4302547.5715454/94‑1 (MQ=60)

                                            AGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTG                                                  >  SRR4302547.2884676/1‑94 (MQ=60)

                                            AGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTG                                                  >  SRR4302547.5904013/1‑94 (MQ=60)

                                            AGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTG                                                  <  SRR4302547.234473/94‑1 (MQ=60)

                                             GTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGA                                                 >  SRR4302547.3442059/1‑94 (MQ=60)

                                              TTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAA                                                <  SRR4302547.252855/94‑1 (MQ=60)

                                               TACTGCCTCTTGAGGGCTTTGCCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAAC                                               <  SRR4302547.1139750/94‑1 (MQ=60)

                                               TACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAAC                                               <  SRR4302547.6251460/94‑1 (MQ=60)

                                                  TGCCTCTTGAGGGCTTTCCCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCTTAACCTGCAGTTGGGAATTGAACGCC                                            <  SRR4302547.146737/94‑1 (MQ=60)

                                                  TGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCC                                            >  SRR4302547.4318121/1‑94 (MQ=60)

                                                  TGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCC                                            >  SRR4302547.1576546/1‑94 (MQ=60)

                                                   GCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCT                                           >  SRR4302547.5524721/1‑94 (MQ=60)

                                                   GCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCT                                           <  SRR4302547.3873332/94‑1 (MQ=60)

                                                    CCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTG                                          <  SRR4302547.1910445/94‑1 (MQ=60)

                                                    CCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTG                                          <  SRR4302547.758303/94‑1 (MQ=60)

                                                    CCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGCGCCATAACCTGCAGTTGGGAATTGAACGCCTG                                          >  SRR4302547.3405145/1‑94 (MQ=60)

                                                     CTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGA                                         >  SRR4302547.1252316/1‑94 (MQ=60)

                                                     CTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGA                                         >  SRR4302547.2113733/1‑94 (MQ=60)

                                                     CTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGA                                         >  SRR4302547.5118695/1‑94 (MQ=60)

                                                     CTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGA                                         >  SRR4302547.1918154/1‑94 (MQ=60)

                                                       CTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACA                                       >  SRR4302547.5957949/1‑94 (MQ=60)

                                                        TTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAA                                      >  SRR4302547.4036440/1‑94 (MQ=60)

                                                        TTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAA                                      >  SRR4302547.5042555/1‑94 (MQ=60)

                                                         TGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATACCCTGCAGTTGGGAATTGAACGCCTGACAAC                                     <  SRR4302547.3836597/94‑1 (MQ=60)

                                                          GAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACA                                    >  SRR4302547.2885092/1‑94 (MQ=60)

                                                           AGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAG                                   >  SRR4302547.5008517/1‑94 (MQ=60)

                                                           AGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAG                                   <  SRR4302547.1152556/94‑1 (MQ=60)

                                                           AGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAG                                   >  SRR4302547.3964074/1‑94 (MQ=60)

                                                           AGGGCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAG                                   <  SRR4302547.3891499/94‑1 (MQ=60)

                                                            GGGCTTTACGTTCTTCGGGTAAGTGATACCTGTCGTCAGGCGGTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGG                                  >  SRR4302547.6634753/1‑94 (MQ=60)

                                                              GCTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAA                                >  SRR4302547.1084180/1‑94 (MQ=60)

                                                               CTTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAA                               >  SRR4302547.1050747/1‑94 (MQ=60)

                                                                TTTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAAT                              <  SRR4302547.6472961/94‑1 (MQ=60)

                                                                TTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAAT                              <  SRR4302547.1911575/94‑1 (MQ=60)

                                                                 TTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATG                             <  SRR4302547.1147879/94‑1 (MQ=60)

                                                                 TTACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATG                             <  SRR4302547.295894/94‑1 (MQ=60)

                                                                  TACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGA                            >  SRR4302547.2422210/1‑94 (MQ=60)

                                                                   ACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAG                           >  SRR4302547.698949/1‑94 (MQ=60)

                                                                   ACCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAG                           <  SRR4302547.3222957/94‑1 (MQ=60)

                                                                    CCTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGC                          >  SRR4302547.1778915/1‑94 (MQ=60)

                                                                     CTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCT                         <  SRR4302547.5977307/94‑1 (MQ=60)

                                                                     CTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCT                         <  SRR4302547.4224578/94‑1 (MQ=60)

                                                                     CTTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCT                         <  SRR4302547.391875/94‑1 (MQ=60)

                                                                     CTTCTGCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCT                         <  SRR4302547.605000/94‑1 (MQ=60)

                                                                     CTGCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCT                         <  SRR4302547.1330147/94‑1 (MQ=60)

                                                                      TTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTA                        >  SRR4302547.5555886/1‑94 (MQ=60)

                                                                      TTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTA                        <  SRR4302547.562593/94‑1 (MQ=60)

                                                                      TTCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTA                        >  SRR4302547.5645729/1‑94 (MQ=60)

                                                                       TCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAG                       <  SRR4302547.5711540/94‑1 (MQ=60)

                                                                       TCTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAG                       >  SRR4302547.6036867/1‑94 (MQ=60)

                                                                       TCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAG                       >  SRR4302547.4321657/1‑94 (MQ=60)

                                                                        CTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGA                      >  SRR4302547.3953254/1‑94 (MQ=60)

                                                                        CTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGA                      >  SRR4302547.4261939/1‑94 (MQ=60)

                                                                        CTTCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGA                      <  SRR4302547.6042774/94‑1 (MQ=60)

                                                                         TTCGGGTAAGTGATACCTGTCGTCAGTTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAG                     <  SRR4302547.6396850/94‑1 (MQ=60)

                                                                          TCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGC                    >  SRR4302547.6568888/1‑94 (MQ=60)

                                                                          TCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGC                    <  SRR4302547.5914745/94‑1 (MQ=60)

                                                                          TCGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGC                    <  SRR4302547.837085/94‑1 (MQ=60)

                                                                           CGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCA                   <  SRR4302547.6344239/94‑1 (MQ=60)

                                                                           CGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCA                   >  SRR4302547.1377146/1‑94 (MQ=60)

                                                                           CGGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCA                   >  SRR4302547.1747237/1‑94 (MQ=60)

                                                                            GGGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAG                  >  SRR4302547.6225967/1‑94 (MQ=60)

                                                                            GGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAG                  >  SRR4302547.4611490/1‑94 (MQ=60)

                                                                            GGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAG                  >  SRR4302547.54679/1‑94 (MQ=60)

                                                                             GGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGT                 <  SRR4302547.1732256/94‑1 (MQ=60)

                                                                             GGTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGT                 <  SRR4302547.6438201/94‑1 (MQ=60)

                                                                              GTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTA                <  SRR4302547.1258444/94‑1 (MQ=60)

                                                                              GTAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTA                >  SRR4302547.853570/1‑94 (MQ=60)

                                                                               TAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAA               >  SRR4302547.6647772/1‑94 (MQ=60)

                                                                               TAAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAA               >  SRR4302547.4572277/1‑94 (MQ=60)

                                                                                AAGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAA              >  SRR4302547.453453/1‑94 (MQ=60)

                                                                                 AGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAAC             >  SRR4302547.6137374/1‑94 (MQ=60)

                                                                                 AGTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAAC             >  SRR4302547.120574/1‑94 (MQ=60)

                                                                                 AGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAAC             <  SRR4302547.3092412/94‑1 (MQ=60)

                                                                                  GTGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACA            <  SRR4302547.3138221/94‑1 (MQ=60)

                                                                                   TGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACAC           <  SRR4302547.5721918/94‑1 (MQ=60)

                                                                                   TGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACAC           >  SRR4302547.5613366/1‑94 (MQ=60)

                                                                                   TGATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACAC           <  SRR4302547.1871874/94‑1 (MQ=60)

                                                                                     ATACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGC         >  SRR4302547.2204609/1‑94 (MQ=60)

                                                                                       ACCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGG       <  SRR4302547.4075041/94‑1 (MQ=60)

                                                                                        CCTGTCGTCCGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGG      >  SRR4302547.6599421/1‑94 (MQ=60)

                                                                                        CCTGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGG      >  SRR4302547.56996/1‑94 (MQ=60)

                                                                                         CTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGC     >  SRR4302547.4687092/1‑94 (MQ=60)

                                                                                          TGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCT    <  SRR4302547.4603569/94‑1 (MQ=60)

                                                                                          TGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCT    <  SRR4302547.4040641/94‑1 (MQ=60)

                                                                                          TGTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCT    <  SRR4302547.4424841/94‑1 (MQ=60)

                                                                                           GTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCTG   <  SRR4302547.6149015/94‑1 (MQ=60)

                                                                                           GTCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCTG   >  SRR4302547.2759653/1‑94 (MQ=60)

                                                                                            TCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCTGA  <  SRR4302547.1611445/94‑1 (MQ=60)

                                                                                            CCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCTGA  >  SRR4302547.5207875/1‑94 (MQ=60)

CGTCCTGACGCGTCTGCCGGAGTGGCCGGAGGAGAGGTTGGCTGAGTTACTGCCTCTTGAGGGCTTTACCTTCTTCGGGTAAGTGATACCTGCCGTCAGGTGTTTGTGCACCGGGCCATAACCTGCAGTTGGGAATTGAACGCCTGACAACAGGAAATGAGCTAGAGCAGTAAACACGCGGGCTGA  >  NC_000913/4499076‑4499261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`