Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,629,559 |
T→C |
Y420H (TAC→CAC) |
slt → |
soluble lytic murein transglycosylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,629,559 | 0 | T | C | 84.8%
| 675.0
/ 101.5
| 263 | Y420H (TAC→CAC) | slt | soluble lytic murein transglycosylase |
| Reads supporting (aligned to +/- strand): ref base T (19/21); new base C (107/116); total (126/137) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.08e-01 |
Only 100 of 266 total aligned reads displayed.
AAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAT > NC_000913/4629467‑4629648
|
gTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCTAGTTGATGTACTg > 1:463762/1‑93 (MQ=255)
gTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTg < 1:5008990/93‑1 (MQ=255)
tATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTgg > 1:3301752/1‑93 (MQ=255)
aTGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTGAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGa < 2:3561616/93‑1 (MQ=255)
aTGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGa < 2:3286927/93‑1 (MQ=255)
tGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGaa > 2:624187/1‑93 (MQ=255)
gCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAAtct > 2:4714005/1‑93 (MQ=255)
cTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAAtctc < 2:4536540/93‑1 (MQ=255)
tGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCg > 2:4094430/1‑93 (MQ=255)
tGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGCCGCGCGGGCGCGAGTTGATGCACTGTAATCTCg > 2:2562182/1‑93 (MQ=255)
aaGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGat > 1:2993303/1‑93 (MQ=255)
aGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGata > 1:3199233/1‑93 (MQ=255)
gATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGataa > 1:5739248/1‑93 (MQ=255)
gATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataa > 2:3079291/1‑93 (MQ=255)
gATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataa > 1:5875425/1‑93 (MQ=255)
aTTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataat < 1:4125527/93‑1 (MQ=255)
aTTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataat < 2:6527305/93‑1 (MQ=255)
aTTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataat < 2:1375754/93‑1 (MQ=255)
aTTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataat > 1:3337826/1‑93 (MQ=255)
ttGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGTCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataata < 1:529957/93‑1 (MQ=255)
ttGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGataata > 2:5504433/1‑93 (MQ=255)
tGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATAc < 1:5418101/93‑1 (MQ=255)
tGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATAc < 1:1370946/93‑1 (MQ=255)
gATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATAcc < 2:5808467/93‑1 (MQ=255)
tAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACcgc > 2:5107168/1‑93 (MQ=255)
tAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACcgc > 1:2494988/1‑93 (MQ=255)
tAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACcgc < 1:6632467/93‑1 (MQ=255)
aaaGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACcgcg > 1:6261203/1‑93 (MQ=255)
aaGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACcgcgc > 1:1057452/1‑93 (MQ=255)
aGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACcgcgcg > 1:6049977/1‑93 (MQ=255)
gcgcCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGt > 1:196740/1‑93 (MQ=255)
gccgcAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGGGATGGCGCGCGTGCGCGAGTTGATGCACTGGCATCTCGATAATACCGCGCGCAg > 1:5591010/1‑93 (MQ=255)
gccgcAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAg < 2:2899252/93‑1 (MQ=255)
gccgcAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAg < 2:5929203/93‑1 (MQ=255)
gccgcAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAg < 2:2992248/93‑1 (MQ=255)
ccgcAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGc > 2:752471/1‑93 (MQ=255)
cgcAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCg > 2:3813391/1‑93 (MQ=255)
cAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAg < 1:1707951/93‑1 (MQ=255)
aGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGt < 1:4693870/93‑1 (MQ=255)
aGAATGTTGACAGCGCCCTGACTCAGGGAGCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGt > 1:3226753/1‑93 (MQ=255)
gAATGTTGCCAGCGCCCTGAATCGGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTg < 1:3910842/93‑1 (MQ=255)
gAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTg < 2:1608058/93‑1 (MQ=255)
aaTGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTgg < 2:5147157/93‑1 (MQ=255)
aaTGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTgg > 1:5784386/1‑93 (MQ=255)
tGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGc < 2:4957401/93‑1 (MQ=255)
gTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGcc < 1:5363033/93‑1 (MQ=255)
gTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGcc > 1:3653149/1‑93 (MQ=255)
tGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGCGGGCCaa < 2:2954536/93‑1 (MQ=255)
gACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAAt < 1:3721553/93‑1 (MQ=255)
aCAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATc < 2:64408/93‑1 (MQ=255)
aCAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATc < 2:2647852/93‑1 (MQ=255)
cAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCt < 1:491257/93‑1 (MQ=255)
aGCGCGCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTg < 2:5597582/93‑1 (MQ=255)
gcgcCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTgg < 2:5306958/93‑1 (MQ=255)
gcgcCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTgg > 2:3198599/1‑93 (MQ=255)
gcgcCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTgg < 2:4838551/93‑1 (MQ=255)
cccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGa > 2:4660208/1‑93 (MQ=255)
cccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGa > 2:4943500/1‑93 (MQ=255)
cccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGa > 2:2139186/1‑93 (MQ=255)
cccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGa > 1:3550327/1‑93 (MQ=255)
cccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGa > 1:4391040/1‑93 (MQ=255)
ccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGaa > 2:3737292/1‑93 (MQ=255)
ccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGaa > 2:3389861/1‑93 (MQ=255)
ccTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGaa > 2:5962738/1‑93 (MQ=255)
cTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAag > 1:2095364/1‑93 (MQ=255)
cTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAag < 2:4253856/93‑1 (MQ=255)
tGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAaga < 2:5362457/93‑1 (MQ=255)
tGAATCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAaga > 1:1952151/1‑93 (MQ=255)
gACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAagag > 1:1289434/1‑93 (MQ=255)
gACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAagag > 1:2400844/1‑93 (MQ=255)
cTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCa > 1:1365131/1‑93 (MQ=255)
tCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCaa < 1:2811374/93‑1 (MQ=255)
aGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGt > 1:3618203/1‑93 (MQ=255)
ggggCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATCCCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCa < 1:5904614/93‑1 (MQ=255)
ggCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCaa > 1:6383989/1‑93 (MQ=255)
gCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCaaa > 1:2726632/1‑93 (MQ=255)
cGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCaaaaa < 2:3890152/93‑1 (MQ=255)
ggAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAAc < 2:4148727/93‑1 (MQ=255)
ggAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAAc > 1:6216312/1‑93 (MQ=255)
agaTGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACag > 1:3988432/1‑93 (MQ=255)
gaTGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACaga < 1:1515207/93‑1 (MQ=255)
ggCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCa < 2:1156229/93‑1 (MQ=255)
ggCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCa < 1:5620639/93‑1 (MQ=255)
cgcgcgTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAgg > 2:4454941/1‑93 (MQ=255)
cgTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCa < 2:3963366/93‑1 (MQ=255)
cgTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCa < 2:1263426/93‑1 (MQ=255)
gTGCGCGAGTTGATGCACTGGAGTCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCaa < 2:6650384/93‑1 (MQ=255)
gTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCaa < 1:6333779/93‑1 (MQ=255)
tGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAAc > 1:5231033/1‑93 (MQ=255)
gcgAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTgg > 1:3116392/1‑93 (MQ=255)
gcgAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTgg < 1:2673501/93‑1 (MQ=255)
cgAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGgc > 1:1668771/1‑93 (MQ=255)
gAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGgcg > 2:1865293/1‑93 (MQ=255)
aGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGgcgc < 1:4750778/93‑1 (MQ=255)
gATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTa < 1:929939/93‑1 (MQ=255)
gATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCACAAACAGAGCAGGCTCAACTGGCGCGGTa > 2:2627594/1‑93 (MQ=255)
gATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTa < 1:3836383/93‑1 (MQ=255)
gATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTa < 1:1139103/93‑1 (MQ=255)
aTGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGtgt < 1:3465337/93‑3 (MQ=255)
aTGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAt < 2:6256120/93‑1 (MQ=255)
|
AAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAT > NC_000913/4629467‑4629648
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTATGCTT > NC_000913/4629466‑4629652
|
GAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGC > SRR4302547.5470360/1‑94 (MQ=60)
AAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCA < SRR4302547.3784580/94‑1 (MQ=60)
AGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCAC < SRR4302547.1582005/94‑1 (MQ=60)
GAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACT < SRR4302547.1821125/94‑1 (MQ=60)
AGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCTAGTTGATGTACTG > SRR4302547.472323/1‑94 (MQ=60)
AGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTG > SRR4302547.3058153/1‑94 (MQ=60)
GTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGG < SRR4302547.5112555/94‑1 (MQ=60)
GTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGG > SRR4302547.3368211/1‑94 (MQ=60)
TATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGA < SRR4302547.291565/94‑1 (MQ=60)
TATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGA > SRR4302547.6386063/1‑94 (MQ=60)
TGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAAT > SRR4302547.6173240/1‑94 (MQ=60)
GCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGTCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTC < SRR4302547.3685295/94‑1 (MQ=60)
GCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTC > SRR4302547.170530/1‑94 (MQ=60)
GAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGAT > SRR4302547.3052843/1‑94 (MQ=60)
AAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATA > SRR4302547.3263020/1‑94 (MQ=60)
AGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAA < SRR4302547.148639/94‑1 (MQ=60)
AGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAA > SRR4302547.5857854/1‑94 (MQ=60)
AGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAA > SRR4302547.5997055/1‑94 (MQ=60)
GATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAAT > SRR4302547.3405361/1‑94 (MQ=60)
GATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAAT < SRR4302547.5367361/94‑1 (MQ=60)
ATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATA < SRR4302547.13904/94‑1 (MQ=60)
ATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATA < SRR4302547.4209430/94‑1 (MQ=60)
ATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATA > SRR4302547.3286277/1‑94 (MQ=60)
ATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGGGCGCGAGGTGAACCACTGGAATCTCGATAATA > SRR4302547.3140906/1‑94 (MQ=60)
TTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGTCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATAC < SRR4302547.539527/94‑1 (MQ=60)
TTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATAC > SRR4302547.2807822/1‑94 (MQ=60)
TGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGTCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACC < SRR4302547.3776313/94‑1 (MQ=60)
TGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACC < SRR4302547.5530180/94‑1 (MQ=60)
TGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACC > SRR4302547.6476300/1‑94 (MQ=60)
TGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACC < SRR4302547.1398450/94‑1 (MQ=60)
TGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACC > SRR4302547.4068112/1‑94 (MQ=60)
TATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCG < SRR4302547.1585865/94‑1 (MQ=60)
GATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCG > SRR4302547.3335732/1‑94 (MQ=60)
ATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGC > SRR4302547.2545398/1‑94 (MQ=60)
TAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCG > SRR4302547.6391279/1‑94 (MQ=60)
TAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCG < SRR4302547.667495/94‑1 (MQ=60)
TAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCG < SRR4302547.6770529/94‑1 (MQ=60)
AAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCG < SRR4302547.5342219/94‑1 (MQ=60)
AAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGC < SRR4302547.6381745/94‑1 (MQ=60)
AAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGC > SRR4302547.1078480/1‑94 (MQ=60)
AAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCG > SRR4302547.5674590/1‑94 (MQ=60)
AAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCG > SRR4302547.6175490/1‑94 (MQ=60)
AAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCG > SRR4302547.788083/1‑94 (MQ=60)
AAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCG > SRR4302547.4220472/1‑94 (MQ=60)
AGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGT < SRR4302547.3585674/94‑1 (MQ=60)
AGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGT > SRR4302547.200416/1‑94 (MQ=60)
GCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTA > SRR4302547.3849083/1‑94 (MQ=60)
CGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAG < SRR4302547.6392715/94‑1 (MQ=60)
CGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAG < SRR4302547.5972269/94‑1 (MQ=60)
AGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGGGATGGCGCGCGTGCGCGAGTTGATGCACTGGCATCTCGATAATACCGCGCGCAG > SRR4302547.5706345/1‑94 (MQ=60)
GCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGC < SRR4302547.2570356/94‑1 (MQ=60)
GCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGC > SRR4302547.6119141/1‑94 (MQ=60)
CCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCG > SRR4302547.3712287/1‑94 (MQ=60)
CCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCG > SRR4302547.4836079/1‑94 (MQ=60)
CGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGA > SRR4302547.4779325/1‑94 (MQ=60)
GCAGAATGTTGACAGCGCCCTGACTCAGGTGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAG < SRR4302547.2531672/94‑1 (MQ=60)
GCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAG > SRR4302547.4103040/1‑94 (MQ=60)
GCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAG > SRR4302547.3566862/1‑94 (MQ=60)
CAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGT < SRR4302547.1741544/94‑1 (MQ=60)
CAGAATGTTGACAGCGCCCTGACTCAGGGAGCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGT > SRR4302547.3291153/1‑94 (MQ=60)
AGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTG > SRR4302547.5835010/1‑94 (MQ=60)
AGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTG < SRR4302547.4833298/94‑1 (MQ=60)
AGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTG < SRR4302547.4791081/94‑1 (MQ=60)
GAATGTTGCCAGCGCCCTGAATCGGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGG < SRR4302547.3990372/94‑1 (MQ=60)
GAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGCTGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGGGG > SRR4302547.5642692/1‑94 (MQ=60)
GAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGG > SRR4302547.5904031/1‑94 (MQ=60)
GAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGG < SRR4302547.569441/94‑1 (MQ=60)
GAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGG < SRR4302547.6247487/94‑1 (MQ=60)
AATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGG > SRR4302547.3283869/1‑94 (MQ=60)
AATGTTGACAGCGCCCTGACTCAGGGCCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGG < SRR4302547.4934404/94‑1 (MQ=60)
TGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCC < SRR4302547.5098877/94‑1 (MQ=60)
TGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCC > SRR4302547.3727673/1‑94 (MQ=60)
TGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCC > SRR4302547.4493826/1‑94 (MQ=60)
GTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCA < SRR4302547.3955485/94‑1 (MQ=60)
GTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCA < SRR4302547.5473658/94‑1 (MQ=60)
GTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCA > SRR4302547.2568186/1‑94 (MQ=60)
TTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAA > SRR4302547.3444483/1‑94 (MQ=60)
TTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAA > SRR4302547.4251494/1‑94 (MQ=60)
TGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGATGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAAT > SRR4302547.2277815/1‑94 (MQ=60)
GACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATC < SRR4302547.3797525/94‑1 (MQ=60)
ACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCT < SRR4302547.6023205/94‑1 (MQ=60)
ACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCT < SRR4302547.2957735/94‑1 (MQ=60)
CAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTG < SRR4302547.500227/94‑1 (MQ=60)
CAGCGCCCTGACTCAGGCGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGCGGGCCAATCTG > SRR4302547.5867925/1‑94 (MQ=60)
AGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGG > SRR4302547.1529869/1‑94 (MQ=60)
CGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGGTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTG > SRR4302547.5115965/1‑94 (MQ=60)
GCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGA > SRR4302547.4481400/1‑94 (MQ=60)
GCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGA > SRR4302547.3622781/1‑94 (MQ=60)
CCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAA > SRR4302547.5524898/1‑94 (MQ=60)
CCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAG > SRR4302547.1109912/1‑94 (MQ=60)
CCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAG < SRR4302547.641490/94‑1 (MQ=60)
CCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAG > SRR4302547.2137139/1‑94 (MQ=60)
CTGAATCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGA > SRR4302547.1990872/1‑94 (MQ=60)
TGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAG < SRR4302547.1225694/94‑1 (MQ=60)
TGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAG < SRR4302547.275831/94‑1 (MQ=60)
TGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAG > SRR4302547.2449468/1‑94 (MQ=60)
TGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAG > SRR4302547.1315399/1‑94 (MQ=60)
GACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGC < SRR4302547.4055310/94‑1 (MQ=60)
ACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCA > SRR4302547.1392522/1‑94 (MQ=60)
ACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCA < SRR4302547.6672679/94‑1 (MQ=60)
TCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAG < SRR4302547.2867623/94‑1 (MQ=60)
CAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGT > SRR4302547.3692017/1‑94 (MQ=60)
AGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTNGGCCAATCTGGTGAAGAGCAAGTC > SRR4302547.2180503/1‑94 (MQ=60)
AGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTC > SRR4302547.5891949/1‑94 (MQ=60)
AGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTC > SRR4302547.3769316/1‑94 (MQ=60)
GGGGCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATCCCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAA < SRR4302547.6026896/94‑1 (MQ=60)
GGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAA > SRR4302547.6517209/1‑94 (MQ=60)
GGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAA > SRR4302547.2781374/1‑94 (MQ=60)
CCGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAA > SRR4302547.2778509/1‑94 (MQ=60)
CGGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAAC > SRR4302547.6345409/1‑94 (MQ=60)
GGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACA < SRR4302547.5521833/94‑1 (MQ=60)
GGAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACA < SRR4302547.1167245/94‑1 (MQ=60)
GAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAG > SRR4302547.498593/1‑94 (MQ=60)
GAGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAG > SRR4302547.4069527/1‑94 (MQ=60)
AGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGA < SRR4302547.5751722/94‑1 (MQ=60)
AGATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGA < SRR4302547.3935791/94‑1 (MQ=60)
GATGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAG < SRR4302547.1545400/94‑1 (MQ=60)
TGGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCA < SRR4302547.1346327/94‑1 (MQ=60)
GGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAG < SRR4302547.5736634/94‑1 (MQ=60)
GGCGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAG < SRR4302547.3344400/94‑1 (MQ=60)
CGCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGC < SRR4302547.337342/94‑1 (MQ=60)
GCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCT < SRR4302547.3696476/94‑1 (MQ=60)
GCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCT < SRR4302547.4567065/94‑1 (MQ=60)
GCGCGTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCT > SRR4302547.3427273/1‑94 (MQ=60)
GTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAAC < SRR4302547.6465663/94‑1 (MQ=60)
GTGCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAAC > SRR4302547.5338709/1‑94 (MQ=60)
GCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTG < SRR4302547.2124870/94‑1 (MQ=60)
GCGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTG > SRR4302547.1712876/1‑94 (MQ=60)
CGCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGG > SRR4302547.3178162/1‑94 (MQ=60)
GCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGC < SRR4302547.5997999/94‑1 (MQ=60)
GCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGC > SRR4302547.1701658/1‑94 (MQ=60)
GCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGC > SRR4302547.2082780/1‑94 (MQ=60)
GCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGC < SRR4302547.3212308/94‑1 (MQ=60)
GCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGC > SRR4302547.1392977/1‑94 (MQ=60)
GCGAGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGC < SRR4302547.2727205/94‑1 (MQ=60)
GAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGC > SRR4302547.2005709/1‑94 (MQ=60)
AGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCG < SRR4302547.4849216/94‑1 (MQ=60)
AGTTGATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCG < SRR4302547.192435/94‑1 (MQ=60)
GATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAT < SRR4302547.947911/94‑1 (MQ=60)
GATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAT > SRR4302547.5157585/1‑94 (MQ=60)
GATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAT < SRR4302547.3121884/94‑1 (MQ=60)
GATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAT < SRR4302547.5454949/94‑1 (MQ=60)
GATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAT < SRR4302547.1162109/94‑1 (MQ=60)
GATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTAG < SRR4302547.3914524/94‑1 (MQ=60)
ATGCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTGTG < SRR4302547.3536002/94‑1 (MQ=60)
GCACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTATGCT < SRR4302547.1291756/94‑1 (MQ=60)
TACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTATGCTT > SRR4302547.2122243/1‑94 (MQ=60)
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GAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGTATGCTT > NC_000913/4629466‑4629652
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
