Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F13 I0 R1
|
284 |
16785.3 |
10492142 |
98.3% |
10313775 |
134.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,032,284 |
A→C |
22.2% |
T104P (ACC→CCC) |
glnK → |
P‑II family nitrogen regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,032,284 | 0 | A | C | 22.2%
| 200.4
/ 17.3
| 135 | T104P (ACC→CCC) | glnK | P‑II family nitrogen regulator |
| Reads supporting (aligned to +/- strand): ref base A (69/33); new base C (2/31); total (71/64) |
| Fisher's exact test for biased strand distribution p-value = 1.47e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 150 total aligned reads displayed.
GTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCGGTG > NZ_CP022686/4032149‑4032420
|
gTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTAcc > 6:750957/1‑138 (MQ=255)
gtgGCTATTGCTGATCACCAACTCGATGAAGTGATCGATATCGACACCAAACCGGCTTACACCGGAAAAATTGGCGACGTCAAAATATTCGTCGCTTAATTGCAACGCGTCATTCGTATTCGTACCGGCTAAGCcgac < 8:1172264/138‑1 (MQ=255)
gtgGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGCAGCcgac > 4:730794/1‑138 (MQ=255)
ggCTATGGCTGATGACCAACTCGATGACGTGAGCGATATCGTCAGCAAAGCGGCTTACACCGTAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCACCGCGTCATTCGTATTCGTCCCGGCGAAGCcgacga < 2:273746/138‑1 (MQ=255)
gATTGCTTATGACCAACTCTATGAAGGTATCTATATCGTAAGCAAAGCGTCTTACACCGTAAAAATTGGCTACTGAAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAgc < 8:518782/138‑1 (MQ=255)
gATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTCCCGGCGAATCCGACGAAgc > 5:105328/1‑138 (MQ=255)
gATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGCCGAAgc > 5:1162774/1‑138 (MQ=255)
gATTGCGGATGCCCAACTCGTTCACGTCAGCGATATCGTAAGCAACGCGGCTTACCCCGGAAAAATGGGCCACGCCAAAATCTTCGTCGCTGAATTGCACCGCGTCTTTCGTATTCGTACCGGCGACGCCGACGAAgc < 2:725344/138‑1 (MQ=255)
aTTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAgcg > 4:633962/1‑138 (MQ=255)
tGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGGGAAGCCGACGAAgcggc > 4:481429/1‑138 (MQ=255)
cTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGgcgc > 2:1173192/1‑138 (MQ=255)
gatgaCCAACTCGTTCAAGTGATCTTTATCGTCCGCAACGCGGCTAACCCCGTAAAAATTGGCCACGGCAAAATCTTCGTCGCTGAATTGCAACGCTTCATTCTTATTCTTCCCGGCGAAGCCGACGAAGCGGCGCTg < 4:416527/138‑1 (MQ=255)
gatcaCCAACACTATGAAGTTATCGATACCGTCATCAAAGCGGCTTACCCCGGAAAAAGTGGCCACGCAAAAATCTGCGACGCTGAATTGCAACGCGTCATTCGTATTCGTCCCGGCGAAGCCGACGAAGCGGCGCTg < 3:954744/138‑1 (MQ=255)
tgaCCACCTCGATGACGTGATCGATATCGTCCGAAAAGGGGATTACACCGTAAAATTTGGCGACGGCAAAATCTGCTGCGCTGAATTGCAACGGGTCATTCTTATTCGTCCCGGCGAAGCCGACGAAGCGGCGCTGTa < 8:233965/138‑1 (MQ=255)
tgaCCAACGCGATGAAGTGCTCGAAATCGGCAGAAACGCGGCTTACACCGTAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCACCGCGTCATTCGTATTCGTCCCGGCTAAGCCGACGAAGCGGCGCTGTa < 2:1260101/138‑1 (MQ=255)
gaCCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTaa > 8:925407/1‑138 (MQ=255)
gaCCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTaa > 5:852944/1‑138 (MQ=255)
aCTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATctct > 2:492967/1‑138 (MQ=255)
tCGATGACGTCAGCGATTGCGTCACCAAAGCGGCTTACACCGCAAAAATTGGCTACGCCAAAATCTTGGTCGGTTATTTGAAAGGCGTCATTCTTTTCCGTACCGGCTACGCCGACGAAGCGGCGCTGTAATCTCTgg < 6:380415/138‑1 (MQ=255)
tCGATGAAGTGTTCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGAATTCATACCGGCGAAGCCGACGAAGCGGCGCAGTAATCTCTgg > 6:395698/1‑138 (MQ=255)
tCGATGAAGTGATCGATATCTTCAGCAAAGCGGCTTACACCGTAAAAATTGGCGACGGCAAAATCTTCGTCGCTTAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTgg < 7:627809/138‑1 (MQ=255)
tCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTgg > 7:413520/1‑138 (MQ=255)
tCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTgg > 7:1066046/1‑138 (MQ=255)
tCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATAGCAACGCGTCATTCTTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCAgg > 8:668931/1‑138 (MQ=255)
agATGAAGTGATCGATATAGTCAGCAAAGCGTCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGACGCCGACGAAGCGGCGCAGTAATCTCTGGc > 3:1324681/2‑138 (MQ=255)
aaGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGcacaca > 1:1184885/1‑138 (MQ=255)
tCGATATCGTCAGCAAAGCGGCTTACCCCGGAAAAATTGGCGACGGCAAAAACTTCGTCGCGGAATTGCAACGCGGCATTCGTATTCGTACCGGCGCAGCCGCCGAAGCGGCGCTGTAATCTCTGGCACACAGCAACa > 2:1007219/1‑138 (MQ=255)
tCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGCCGAAGCGGCGCTGTAATCTCTGGCACACAGCAACa > 4:1028730/1‑138 (MQ=255)
tCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACa > 4:346323/1‑138 (MQ=255)
gATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCGCACAGCAACAgg > 8:933053/1‑138 (MQ=255)
gATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAgg > 2:1172726/1‑138 (MQ=255)
tCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaa > 3:1140439/1‑138 (MQ=255)
gcAGCAAAGCGGCTTACACCTGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGACGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaa > 4:764645/2‑138 (MQ=255)
cAGCAAAGCGGTTTACACCGGAAAAATTGGCCACGGCAAAATCTTCGTCGCTTAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaaa < 2:853286/138‑1 (MQ=255)
accAACGCGGATAACACCTTAAAATTGGGCGCCGCAAAAATATTCGTCGCTTAATTGAAACGCGTAAATCTTTTTCGTCCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaaaa < 5:575757/136‑1 (MQ=255)
aGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCACCAGGAACGaaaaa > 2:615332/1‑138 (MQ=255)
aGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaaaa > 2:183224/1‑138 (MQ=255)
aGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaaaa > 3:273670/1‑138 (MQ=255)
aGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGGCATTCGTATTCGTCCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACCGCAACAGGAGCGaaaaa > 6:353483/1‑138 (MQ=255)
aGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGATGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACCCAGCAACAGGAACGaaaaa > 4:55500/1‑138 (MQ=255)
tattACACCGTAAAAATTGCCGACGACAAAATTTTCGTCGATTAATTGCACCGCGTCATTCTTATTCGTCCCGGCTAAGCAGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAg < 1:389427/136‑1 (MQ=255)
tACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCaa > 1:1207970/1‑138 (MQ=255)
cacCGTAAAATTTGGCGCCGGCAAAATATTCGTCGGTTAATTGCACCGCGTCATTGGTATTCGTCCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGATCGAAAAATGAAGATAGCAACg < 5:856305/138‑1 (MQ=255)
cacCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACg > 3:1237550/1‑138 (MQ=255)
aacgtaaaatTTGGCGAGGCAAAAATATTCGGCGTTTAATTCCAACGCTCCATTCTTTTCCGTCCCGCCGAACCGGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGa < 7:1195/133‑1 (MQ=255)
caaaatTTGGCTACGGAAAAATATTCGGCGTTTAATTGCATCGCGTCTTTTTTATTCTTACCGGCGACGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATaaa < 7:75194/137‑1 (MQ=255)
aaaaTTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATaaaaa > 2:832026/1‑138 (MQ=255)
aaaaTTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATaaaaa > 6:563024/1‑138 (MQ=255)
aaaaTTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATaaaaa > 2:623372/1‑138 (MQ=255)
aaaaTTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATaaaaa > 5:64918/1‑138 (MQ=255)
aaaTTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAAc > 6:1001669/1‑138 (MQ=255)
aaTTGGAGACGGCAAATTCTTGGTCTCTTAATTGCAACGCTTCTTTCGTATTCTTACCGTCTAAGACGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACt < 8:560649/138‑1 (MQ=255)
tGGCTACGGAAAAATTTTCGTCGCTTATTTGCAAGGCGTCATTGGTATTCTAACCGGCGATGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTggg < 3:636839/138‑1 (MQ=255)
gcgcCGGAAAATGCTGCGTCGCGTAATTGCAACGCTTCATTCTTATTCGTACCGGCTAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCt < 6:533150/138‑1 (MQ=255)
cGACGGCAAAATCTTCGTCTCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGCCGAAGCGGCGCTCTAATCTCTGGCACCCAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAACCTGGGCtt > 4:917357/1‑138 (MQ=255)
caCGTCAAAATGTTCGTGGCATAATTGCACCGCGTATTTAGTATTCGTACCGGCTATGCCGACGAAGCGTCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTa < 7:73087/137‑1 (MQ=255)
ggCAAATTCTTCGGTCCTTAATTGCATTCCGTCTTTCTTATTCGTCCCGGCCATTCTGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAAGGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACtt < 6:121252/138‑1 (MQ=255)
aaaGCTTCGTCGCTTAATGCCACCGCTGCCTTCTTAGCCTTCCCGGCGAATCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACACGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTCCTTCACt < 4:244650/138‑1 (MQ=255)
ttgcgtcgCTGAATTCCACCGCGTCATTGGTATCCGACCCGGCGATGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCg < 3:260573/135‑1 (MQ=255)
gttggtcgCTTAATTCCAACGCGTCATTGGTTTTGGTCCCGGCCAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCg < 3:110459/134‑1 (MQ=255)
ctgcgtcgCTGAATTGCAACGCGTCATTCGTATTCGTCCCGGCCAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCg < 8:311890/135‑1 (MQ=255)
cTTGGTCGCTGAATTTAAACGCGTCTTTCTTTTCCGTCCCGTCGACGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCg < 4:233709/138‑1 (MQ=255)
cTTCGTCGCTTAATTGCAACGCGTAATACGTATTCCTACCGCCGAACCCCACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCg < 8:1179311/138‑1 (MQ=255)
cTTCGTCGCTGAATTGCAACGCGTCATTCTTATGCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCg < 7:319665/138‑1 (MQ=255)
cTTCGGCTCTGAATTCAAACGCTTCATTCTTATTCTTCCCGGCTCACCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCg < 6:104255/138‑1 (MQ=255)
attCGGCGCTGATTTCCAACGCGTCATTCTAATTCGTACCGGCGATGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATATCAACGATAAAAACTGGGCTTACTTCACTGGCg < 2:1017909/137‑1 (MQ=255)
cgtcgCTGAATGGACCGGCGACATTCGTTGACGTACGGTAGAAGCCTACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGTGCTTACTTCACTGGCGAtg < 3:1205354/138‑1 (MQ=255)
cgCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGAtgctg > 7:331031/1‑138 (MQ=255)
tttaaTTCCACCGCGTCATTCCTATGCGACCCGGCCACCCCGACGAAGCAGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGcc < 1:446169/135‑1 (MQ=255)
cttaaTTGCAACGCGTCATTCGTATTCGTACCGGCCAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGcc < 4:617823/135‑1 (MQ=255)
taaTTGCACCGCGACATGCGTATTCGACCCGCCGACCCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCgg < 7:1089069/137‑1 (MQ=255)
taaTTCCAACGCGTAATTCTTTTGCTACCCGGCGAAGCGCACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCgg < 1:579606/137‑1 (MQ=255)
tagCAACGCGTCATTCGTCTGCGTCCGGGCGACCCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGAc < 1:900420/136‑1 (MQ=255)
ccAACGCGTCATTCGTTTTCGTCCGGGCGACGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTg < 3:346323/137‑1 (MQ=255)
cAACGCGTCATTCGTATGGGACCCGGCGACGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTgg < 3:187612/138‑1 (MQ=255)
cAACGCGTCAATCTTATTGTGACGGCCCACGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTgg < 1:879204/138‑1 (MQ=255)
cAACGCGTATTTCGTATTCGTACGGGCGACTCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTgg < 7:254479/138‑1 (MQ=255)
aaaCGCGTCATCCGTATTTGTCCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTgg < 7:581207/137‑1 (MQ=255)
aCGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTa > 7:420973/1‑138 (MQ=255)
gttaattcgtattctaACCGGCAAATCCGACGAAGCGGCGCTGTAATCTCTGGCACACATCAACATGAAAGAAAAATGAAGATAGCAACGAAAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATg < 8:80426/134‑1 (MQ=255)
gggcATTCTTATTCGTCCCGGCGACGCCGACGATGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCCACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATg < 6:979221/135‑1 (MQ=255)
ggccagtcgtattgctcCCGGAGCCGCCGACGAAGCGGCGCGGAAATCTCTGGCACACAGCAACAGGAACGTAAAATGAAGATAGTAACGATAAAAACTGGGCGTACTTCACTGGCGATGCTGCCGGGACAGGTAATg < 2:766185/132‑1 (MQ=255)
ggTCATTCGTTTTCTTCCCGGCGACGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATg < 4:566169/137‑1 (MQ=255)
cgcaattcttattcttACCGCCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATg < 3:355811/134‑1 (MQ=255)
tCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGTTAATGGc > 4:939596/1‑138 (MQ=255)
tCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGc > 7:960125/1‑138 (MQ=255)
tCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGc > 6:860030/1‑138 (MQ=255)
tCATTCGTATACGTACCGGCGAAGCCGACGAAGCGGCGCTCAAATCTCTGGCACACAGCTACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTCCATCACAGGCAAAGCTGCAGCGACGCGTAATGGc > 6:836685/1‑138 (MQ=255)
attcgtattcgtACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTg > 7:664153/1‑138 (MQ=255)
ttcttattcgtaCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGc < 3:913516/138‑1 (MQ=255)
ttcgtattcgccCCGGCCACGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGc < 7:457504/138‑1 (MQ=255)
tgctatttcgtcCGGGTGTAGCCCACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACTAAAAATTAAGATACCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGc < 1:17157/132‑1 (MQ=255)
ggtaCCGCCGACGCCGACGAAGCGGCGCTGTACTCGCTGGCACACAGCAACAGGAACTAAAAAAGAAGCTAGCCACGATAAAAACTTGGCTTACTTCACTGGCGATGCGGCCGGGACTGGTAATGGCTGCACCTGCgg < 7:994607/137‑1 (MQ=255)
cgtaCCGGCGAAGCCGCCGAAGCGGCGCTGTAATCTCTGGCACACAGCAAAAGGAACGAAAAATGAATATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCgg > 1:164677/1‑138 (MQ=255)
cgtaCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCgg > 2:1271823/1‑138 (MQ=255)
cgtaCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCgg > 3:566169/1‑138 (MQ=255)
cgaaCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACTAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCgg < 4:342936/135‑1 (MQ=255)
taCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCGGTg > 2:523352/1‑138 (MQ=255)
taCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCGGTg > 1:548304/1‑138 (MQ=255)
taCCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACAGGTAATGGCTGCACCTGCGGTg > 4:1118334/1‑138 (MQ=255)
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GTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGCAAAGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCAACGATAAAAACTGGGCTTACTTCACTGGCGATGCTGCCGGGACTGGTAATGGCTGCACCTGCGGTG > NZ_CP022686/4032149‑4032420
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
