Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,390,610 |
C→G |
20.1% |
D145H (GAC→CAC) |
sgcX ← |
M42 family metallopeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,390,610 | 0 | C | G | 20.1%
| 370.7
/ 36.3
| 202 | D145H (GAC→CAC) | sgcX | M42 family metallopeptidase |
| Reads supporting (aligned to +/- strand): ref base C (62/81); new base G (40/2); total (119/83) |
| Fisher's exact test for biased strand distribution p-value = 2.34e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 218 total aligned reads displayed.
GAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGATC > NZ_CP022686/3390476‑3390747
|
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGGTGTCTTTggg > 5:353061/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTggg > 3:790484/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGc > 1:424790/1‑140 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGc < 2:893210/140‑1 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTATTTggg > 5:253026/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTGTTTggg > 3:231045/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTggg > 4:287023/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTggg > 5:578511/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTAGAGCGTCGTCTTTGTGGTTggg > 6:497145/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTAGACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGtctttgtctttgtg > 5:91493/1‑138 (MQ=255)
aGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCAcc < 1:136827/140‑1 (MQ=255)
ggCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCaa > 6:597529/1‑140 (MQ=255)
aGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAatat < 4:421755/140‑1 (MQ=255)
tACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTTGGTTTGGCACCAATATCa > 6:230735/1‑140 (MQ=255)
tACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCa > 2:920064/1‑140 (MQ=255)
tACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGGTGCGGCGGGTTATACAGAGTGACAGGCGTACCGCCCTGAATGCCCCTTCGTATAGCGTCGTCGTTGGGGTTGGCCCCAattgga > 4:327088/1‑136 (MQ=255)
cAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTAGTTTTATTTTGGACCAAAATCa > 8:29278/1‑138 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTGGTTGGCCCCACTATCAATAca > 1:48374/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGGGGTTGGCACCAATATCAATCca > 2:435646/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCAAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTATTTTTCACCAATAACAATAca > 6:886307/1‑140 (MQ=255)
cAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCcaca > 1:349899/1‑140 (MQ=255)
aCGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTTTGTTTGGGACCAATATAAAACAACAGtt > 6:787989/1‑140 (MQ=255)
aCGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCGGAATGCCCATTCGTATAGCGTCGTCGTTGTCGTTGGCACCAAAATAAAAcccaattt > 4:188990/1‑134 (MQ=255)
aCGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGACAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGtt > 1:930931/1‑140 (MQ=255)
gATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTg < 5:828490/140‑1 (MQ=255)
gATCGTCTAGTGCGTTACTTCACACCAGATCGTGTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGGCTTTGTCTTTGGCACCAATATCAATCCACAGtt < 8:687465/138‑1 (MQ=255)
gATCGTCTAGTGCATTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGGTATACAGAGTGACAGGCGTACCGACCTGAATGCCCCTTCGTATAGCGGCGTGTTATTCTTTGCCCCCAATATCAAACcacacag > 8:725030/1‑135 (MQ=255)
cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTCGTTGTGCCCAAGATAAATCCACAGTTTTTCg > 5:12025/1‑140 (MQ=255)
cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGTCACCAAAATCAATACACAGGTTGTCg > 4:54814/1‑140 (MQ=255)
cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTGTTTGGGACCAATATAAATACACAGGTTGTcc > 4:21886/1‑139 (MQ=255)
cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGCCCCCAAATAAATCCACAGTTTGtgg > 1:624125/1‑138 (MQ=255)
gTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTc < 7:814451/138‑1 (MQ=255)
aGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGa < 2:473384/140‑1 (MQ=255)
aGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGa < 3:482581/140‑1 (MQ=255)
tGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACACTTTGTCGCCAGAAg > 4:343528/1‑140 (MQ=255)
cTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGCCACAATATCAATACACAGTTTGTCGACAGAAggc > 6:828490/1‑139 (MQ=255)
ttACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGt < 7:375621/138‑1 (MQ=255)
ttACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGa < 2:287946/140‑1 (MQ=255)
tACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTTTCGACAGAAGGTGAc > 4:733806/1‑140 (MQ=255)
tACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATACACAGTTTGTAGACAGAAGGTGAc > 2:681255/1‑140 (MQ=255)
tACTGCACACCAGATCGTTTGCCAAGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTATTTGGCACCAATATCACTCCACAGTTTGTCGACATAATGTGAc > 5:675546/1‑140 (MQ=255)
aCTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACt < 5:449359/140‑1 (MQ=255)
cTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTTTACCGTCGTGAGTATCTTTGGCACCAATATAAAACCACAGATTGTCGACAGAAGGTGaa > 7:429743/1‑137 (MQ=255)
cTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTGGTTTGGCCCCAATATAAATCACCACTTTGTCGCAATAAGGTGAc > 8:486971/1‑138 (MQ=255)
cTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGGACCAATATCAATCCACAGTTTGTCGACAGAAGGTGAc > 7:311810/1‑138 (MQ=255)
cacaCCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTGTTTTGGACCAAAAAAAATACACAGTTTTTCGACAGAAAGTGACagcgt > 3:353027/1‑140 (MQ=255)
cacaCCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTGTTTGGCCCCAATATAAATACACAGTTTTTCGACAGAATGTGACtgcgt > 5:407321/1‑140 (MQ=255)
cAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGGAGTTGTCTTTGGCACCAATATCAATACAAAGTTTGTGGCCAGAAGGAGACAGCGTGCGCt > 3:530011/1‑140 (MQ=255)
gATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCt < 7:141640/138‑1 (MQ=255)
aTCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGCCCTGAATGCCCATTCGTATAGCGTCGTCATTGTGTTTTGCACCAAAATCAAAACACAGGTTTTCGACAAAAAGTTACAGACTGCGCtgct > 4:941411/1‑137 (MQ=255)
aTCGATTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGGCGTCGTTGTCTTTTGCACCAATATAAATCAACCGGTTGTCGACAGCAGGTGGCTGGGTGGGCtcgg > 6:387661/1‑139 (MQ=255)
gTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGc < 1:339528/140‑1 (MQ=255)
tttGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACATGAATGCCCATTCGTATAGCGTCGTCTGTGTCTTTGGCCACAATATGAATCCACAGGTTGTGGACAGAAGGTGTCTGCCTGCGCTCGTCGcc > 6:285587/1‑140 (MQ=255)
tttccAGGAGGTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTTAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAATGTGACTGCGTGCGCTCGTCGCCt < 2:697020/137‑1 (MQ=255)
ttGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCt < 3:941411/140‑1 (MQ=255)
gAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCaa < 2:393074/140‑1 (MQ=255)
gAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCaa < 1:89434/140‑1 (MQ=255)
ggcggGTTATACATAGTGACAGTCGTACCGACGTGAATGGCCTTTCGTATAGAGTCGTCTTTGTGTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGAGTGCGCTCGGCGCCTTTGGCAAAGTGGTa < 5:495970/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGCCACAAAATAAATCCACAGTTTGTGGACACAAGGTGACTGCGTGCGCACGTCGCCGTTGGCaaatgtg > 7:195678/1‑134 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTgg < 7:571733/138‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTa < 3:65906/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTa < 6:187868/140‑1 (MQ=255)
ggTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGCCCCAATATAAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAgggc > 2:347655/1‑138 (MQ=255)
ttATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACtt < 4:447935/140‑1 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTGGGTGGCACCAATATCAATCCACAGTTTGTCGACAGAACGTGTCTGCGTGCGCTCGTCGGCGTTGGCAAAGTGGTAGGTCTTAATGCCgg > 4:395939/1‑139 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTGTTTGGCACCAATATCAATCCACAGTTTGTGGACAGAAGGTGACGGCGTGCGCGCGTCGCCGTTGGCAAAGTGGTAGGGCTTAATGCCgc > 2:331899/1‑139 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGt < 6:115695/91‑1 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTa > 1:391894/1‑126 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTATTTGGGACCAATATCACTCCACCGGGTTTCGAAACAAGGTGGCATAGTGCGCTAGTCGCCCTTGGGAAAGTGGGAGGAATTAATGACgc > 6:759681/1‑139 (MQ=255)
tGACCGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 1:540983/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGGATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 3:471315/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCTTATAGCGTCGTCTTTTTCTTTGGCACCAATATCAATCCACAGGTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 8:390616/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTTTATTTGGCACCAATATAAATCCACAGTTTGTCGGCAGAAGGTGACAGCGTGCGCTAGTCGGCGTTGGCAAATTGGTATGACTTAATgaccctt > 1:235104/1‑134 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTGTTTGGCACCAATATAAATCCACAGTTTGTCGGCAGAAGGTTACAGGCTGCGGTCGTCGCCATTGGGAAAGGGGTAGGCCGTAATTCCGATa > 2:944859/1‑140 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 8:273230/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 5:509745/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 5:787989/140‑1 (MQ=255)
gACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATac < 5:753544/140‑1 (MQ=255)
aCAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGAACCAATATAAATACCAAGTTTGTGGACAGAAGGTGACTGCGTGCGCTCGGCGCCTTTGGCAAAGTGGTAGGACATAATGCCGCTa > 8:106532/1‑138 (MQ=255)
gCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACAcccc < 6:530795/140‑1 (MQ=255)
gCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACAcc < 8:490698/138‑1 (MQ=255)
gCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACAcc < 7:284624/138‑1 (MQ=255)
aCCGCCCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGCACCAATATCAATCCCCAGTTTTTCGAAAGTAGGTTACTTCTGGCGCTCGTCGCCTTTGGCAAATTGGTAGGACTTTATGCCGATACACCCCATGa < 5:242220/140‑1 (MQ=255)
aCCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTCTTTTGCACCAATATCAATACACAGTTTGTCGACAGAAGGTGACTGCGTGCGCGCGTCGCCGTTGGGAAAATGGTTGGTCTTAATGCCGATACACCCCATGa > 5:106359/1‑140 (MQ=255)
aCCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGCACAAATATAAATACAAAGTTTGTCGCAATAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTTGGACTTAATGCCGATACACCCCATGa > 4:876814/1‑140 (MQ=255)
aCCGACCTGAATGCCCATGCGTATAGCGGCGGCATTGTCTTTGGCACCAATAGCAATCCACAGTTTGTCGACAGAAGGTGACGGCGTGCGCTCGGCGCCGTTGGCAAAGTGGTAGGACTTAATGCCGATACCCCCCATGa < 6:377435/140‑1 (MQ=255)
cGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACt < 1:552923/140‑1 (MQ=255)
gACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGAc < 8:626659/138‑1 (MQ=255)
gACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTg < 3:216347/140‑1 (MQ=255)
gACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTg < 3:697703/140‑1 (MQ=255)
ccgAATGCCCATTCGTATAGCGTCGTCATTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTTCGTGCGCTCGTCGCCATTGGGAAAGTGGTAGGACTTAATGCCGATACACCCCATTACTGGcc > 6:457773/3‑140 (MQ=255)
ccATTCGTATAGCGTCGTCGTTGTCTTTGGCCACAATAACAATCCCCCGTTTGTCGAAACAAGGTGACTGCGGGCGCGCGTCGCCGTTGGGAAAGTGGTTGGCACTAATTCCGATACACCCCAAGACCAGCCCGTTGtac > 2:54829/1‑138 (MQ=255)
cGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGt < 4:235966/140‑1 (MQ=255)
gCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAgg < 7:48774/138‑1 (MQ=255)
gCGTCGGCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGt < 2:564172/140‑1 (MQ=255)
gtcgtcTTTGTCTTTGGCACCAATATAAATACACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAATTGGTAGGACTTAATGCCGATACCCCCCATTACTGGCCCTTTTTCCCCGGGGCGGGTGa > 2:351416/1‑140 (MQ=255)
gtctttgtatttGGCACCAATATAAATCCACAGTTTGTAGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTTGTAGGACATAAAGCCGATACACCCCAAGACTGGCCCTTTGTACCCCGTGAGGGTGACGa > 4:61991/1‑140 (MQ=255)
ttgtctttgGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGa < 5:292410/140‑1 (MQ=255)
ttgtctttgGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGa < 6:612384/140‑1 (MQ=255)
gtctttgGCACCAATATCAATCCACAGTTTGTAGACAGAAGGTTACTTCGTGCGCTCGTCGCCTTTGGCAAAGTTGTAGGTCTTAATTCCGATACACCCCATGACTGGGCCTTTGTACCCGGGGAGGGTGACGATTGATc > 4:166144/1‑140 (MQ=255)
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GAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGATC > NZ_CP022686/3390476‑3390747
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
