Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,060 |
T→G |
18.1% |
K122T (AAA→ACA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,060 | 0 | T | G | 18.1%
| 269.8
/ 23.3
| 146 | K122T (AAA→ACA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base T (16/101); new base G (27/2); total (43/103) |
| Fisher's exact test for biased strand distribution p-value = 4.21e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 149 total aligned reads displayed.
CCGTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTT > NZ_CP022686/1859928‑1860199
|
ccGTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑ttttt‑ttt > 6:62189/1‑140 (MQ=255)
ccGTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTAtt‑ttt > 7:157900/1‑140 (MQ=255)
gTCCTTTGCCAACTGAATTCGCCCGGCTTTATTCAATACCAGAATGATTGCACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGCCCATTGCCGTCAATAACTAATTGCGCCCACGGATAGCGGTGT‑TTAtg‑ttt > 2:657221/1‑138 (MQ=255)
tGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATT‑TTTTTAGA‑att > 8:443239/1‑140 (MQ=255)
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGTTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTg < 1:161006/138‑1 (MQ=255)
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGcc < 8:686021/140‑1 (MQ=255)
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGcc < 7:345998/140‑1 (MQ=255)
aaTTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTT‑TTTTTTGATTTTTGCCaa > 1:1026468/1‑138 (MQ=255)
cGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACa < 2:509941/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATa < 1:222802/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGc < 3:23722/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TATTGCCAACGACAAAATAGc < 6:321310/140‑1 (MQ=255)
gCTTTATTCAATACCAGAATGTTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGGCAATAACGAATTGCGCCCACGGATAGCGGCGG‑GTATT‑TTTTTCTG‑TTTTGGCAAAGACAAAATAgac > 8:187930/1‑138 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTAGA‑TTTTTCCCAAGACCAAAAAGcc > 3:1211941/1‑140 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATT‑TTTTTAGA‑TTTTTGCAAAGACAAAATATcc > 4:800176/1‑140 (MQ=255)
gCTTTAGTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAAGATCGAATTGCGCCCACGGATAGCGGCGT‑GTATT‑TATTTAGA‑ATTTTTAAAAGACaaaaaatca > 7:465247/1‑135 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGc < 1:855468/138‑1 (MQ=255)
ttCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTAcc < 6:940244/140‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGTCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGCTAGCGGCGT‑TTTAG‑TTTTTAGA‑ATTTTGCACCGACACAATATCAAGTTCCCAA‑gt > 8:813475/1‑139 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCACCGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTT‑TTTTTTGA‑TTTTTAAAACGAACAAATAAACAGTCACaaaca > 7:225031/1‑138 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGGTTTT‑TTTTATGT‑TTTTCCCAAC‑AGACAATAGCCCTTTCCAAA‑gt > 7:507163/1‑139 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTGGA‑TTTTGCACACGCCAAAATATCCAGTACCaaata > 5:720328/1‑138 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TGTTT‑TTTTTGGA‑TTTTGCCAACGGCAAAATAACCCGTACCaaata > 6:983239/1‑138 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATT‑TTTTTAGA‑TATTTGCAACCACAAAATATCCACTaaaaaaaa > 5:760971/1‑133 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTT‑TTTTTTGA‑TTTTTGCAACGACAAAAAAGCCAGGACCAAA‑Ga > 5:1059513/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCAGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTT‑TTTTTAGA‑TTTATGCACAGACAAAAAAGACAGTaaacaaat > 3:348571/1‑133 (MQ=255)
cAGAAGGGGTGAACTCTGCTCCGGCCAGTGCCAGGCAACGCGGCCCCGCCCATTGCCGGCACTAACGAATTGCGCCCACGGATAGCGGCGT‑GTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATgg < 3:944163/140‑1 (MQ=255)
gAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTT‑TTTTTATA‑TTTTTGGAACGACAAAATAGACAGTGCCAAA‑CATgggc > 5:892208/1‑138 (MQ=255)
aaTGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGcat < 8:1094063/140‑1 (MQ=255)
ggatGAACGCTGCTCCGGCAATTGCCAGGCAACGCGCCCCCGACCATTGCCGTCAATAACGACTTGCGCCCAGGGATAGCGGCGG‑TTATT‑TTTTTCGA‑TATTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGcatcat < 8:680328/137‑1 (MQ=255)
ggTTGCACTCTGCTCAGGCAATTGCCAGGCAACGCGTCCAAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGG‑GTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGcatcat < 5:402208/140‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCATCGCGTCCCAGCCCATTGCCGTCAATCACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGcatcat < 5:648873/140‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGcatcat < 8:720293/140‑1 (MQ=255)
ggTTGAACTCTGCTCAGGCAATTGCCAGGCAACGCGTCCCAGACCATTTCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGACAACGACAAAATAGCCAGTACCAAA‑GATGGcatcat < 4:1071986/140‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTT‑TTTTTTTA‑TTTTTCCAAACACCAAATAACCAGTAGCAAA‑AATggggtaacc > 8:628495/1‑133 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTT‑TTTTTAGA‑TTTTTCCAAAGACAAAAAAGCCACTACCCAA‑GAAGGcatcata > 8:1145068/1‑139 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGcatcat < 1:392132/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGcatcat < 2:6238/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCg < 8:467848/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACAATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCg < 6:153078/140‑1 (MQ=255)
ttGAACTCTGCTCCGGAAATTGCCAGGAAACGGGTCCCAGACCATTGCCGTAAATAACTAATTGGGCCCACGTATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCTTTACCAAA‑TATGCAATCATCg < 4:171886/140‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAAGGCGTCCCCGACCATTGCCGTCAATAACGAATGGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCg < 2:255414/137‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGgt < 8:818361/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGgt < 6:998098/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGgt < 3:112520/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGgt < 7:39645/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGgt < 6:654138/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGAGTCACAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATATCGGCGT‑GTATT‑TTTTTAGA‑TTTTTACAAAGACAAAATAGCCAGTTCCAAA‑GAAGGCAACCTCGgt > 4:524744/1‑140 (MQ=255)
ctctGCTCCGGCAATTGCCATGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCTCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGgtg < 2:424478/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTGAATAACGAAATGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGtt < 4:989668/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGtt < 7:1096506/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGtt < 5:1135233/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGtt < 8:431675/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTAT‑TTTTTGGA‑TTTTTACAACGACAAAAAAAACAGTACCAAA‑GAAGGGTTAATCGGTGtt > 6:148939/1‑140 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGGCCCAGAACATTGCCGTCAATAACGAATTGCGCCCAAGGATAGCTGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGtt < 3:630055/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGAAACGCGTCCCAGCCCATTGCCGTCAATACCGAATTGCGCCCACTGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGtt < 8:734390/140‑1 (MQ=255)
atctGCTCCGGGAATTGCCAGGCAACGCGTCCCCGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCATCGACATAATATCCAGTACCATA‑GATGGCATCATCGGTGtt < 5:40661/139‑1 (MQ=255)
atctGCTCCGGCAATTGCCATGCAACGCTTCCCAGAACTTTGCGGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGtt < 6:320667/139‑1 (MQ=255)
tctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCTT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGgtgt < 1:1013671/138‑1 (MQ=255)
ttgctgcGGCAATTGCCAGGCATCGCGTCCCAGACCTTTGCAGTCAATATCGAATTGCGGCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATTGCCAGTTCCAAA‑GATGGCATCATCGGTGtt < 1:329675/137‑1 (MQ=255)
tGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTT‑TTTTTATA‑TTTTGGCAAAGAAAAAATAAACAGTACCAAA‑ACTGGCCAAATAGGTGTTgac > 8:654453/1‑140 (MQ=255)
tGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTc < 1:1061126/138‑1 (MQ=255)
gCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTATTTTATCA‑TTATG‑CAACGTCAAAATAACCAGTTCCAAA‑AAAGGCCTAAACGGGCTTcaca > 4:586283/1‑140 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCGCAGACCATTTCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGACAGTACCAAT‑GATTTCATCATCGGTGTTcac < 1:631705/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACTGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTcacat < 3:445322/140‑2 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACaa < 3:986170/140‑1 (MQ=255)
cAATTGCCAGGCAACGCGTCCCAGACAATTGCCGTAAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAgtgg < 6:508746/140‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAgtggt < 4:61284/140‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTAGT‑TTTTGCCCACGACAAAAAAGCCAGTAACAAA‑TATGGGTGGAAGGGTGTTCTCAATAgtt > 2:685333/1‑137 (MQ=255)
aTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTT‑TTTTTTGA‑TTTTTGCAAAGCCCAAAAAGCCCCTACAAAA‑GATGGCCTCATCGGGGTGGACAATAgtggtg > 5:389555/1‑140 (MQ=255)
ttGCCAGGCAACGCTTCCCAGACCATTGCCTTCAATAACTAATTGCGCCCACGGATAGCGGCTT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGtggtgg < 6:734395/140‑1 (MQ=255)
tGCCAGGCATCTCTTCCCAGACCATTGGCGTAAATAACGTATTTCGCCCAAGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGTCATCATCGGTGTTCACAATAGTGGTggg < 7:482364/140‑1 (MQ=255)
tGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTT‑TTTTTTGT‑TTTTTGGCACAGCAAAATAAACAGGACCCAA‑AATTGGGTTATCGGTGTTTTCAATATTTGTggg > 3:213301/1‑140 (MQ=255)
ccAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTggg < 1:30045/138‑1 (MQ=255)
gCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGaaa < 5:981677/140‑1 (MQ=255)
gCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGa < 1:717648/138‑1 (MQ=255)
cgcgTCCCAGACCATTGCCGTCAATAACGACTTGCGCCCACGGATAGCGGCGT‑TTTTA‑TTTTTCGA‑TTTTGCCACCGGCAAAAAAGCCAGTACCAAATCATGG‑GTCATCGGTGTTATAAAAAGTGGTGGGGGGaaaaagc > 8:339175/1‑137 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTT‑TTTTTTGA‑TTTTGCCAACGACAAAATAGCCAGGACCCAA‑GATGGGGTGATCGGTGTTAACAAAAGTTGGGGGGGGGAAACgc > 2:432483/1‑137 (MQ=255)
aGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGa < 7:217833/140‑1 (MQ=255)
gACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGaa < 5:993962/140‑1 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTT‑TTTTTTAT‑TTTTGCCAA‑GCCAAAAAACACAGTTCAAAA‑AATGTCAGAATCGGTGGTTGCAATATTTGGGGGGTGATAAAAAACCAGCGAAAAGttt > 4:359798/1‑140 (MQ=255)
ccGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTT‑TTTTTAGG‑TTTTTCCAAAGACAAAAAAGCCAGTTCCAAA‑AATTGCATAAAGCGGGGTAAAAATAGTGGTGGGCGGTAAACGATCCTGCGAAAAGttt > 2:970133/1‑138 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCaa < 4:165183/140‑1 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGGGGGGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCaa < 3:856586/140‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 4:544824/140‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 3:802179/140‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 4:438181/140‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 6:362350/140‑1 (MQ=255)
atagcgcCCACGGATATCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCCACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGATTCAACCGCt < 8:546889/137‑1 (MQ=255)
aTTGCGCCGACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCTCAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 3:571529/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 6:364416/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 4:756281/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 3:977407/140‑1 (MQ=255)
gcgcCCACGGCTAGCGGCGT‑TTATT‑TTTTTAGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTtta < 7:650505/140‑1 (MQ=255)
gcCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTtta < 2:360302/138‑1 (MQ=255)
ccACGGATAGCGGCGT‑TTATT‑TTTTTAGA‑TTTTGCCAAAGACAAAATAGCAAGTTCAAAA‑GAAGGAATCATGGGTGTTCACAATAGTGGTGGGATGAAATAGATAATGCGAAAAGTTTGCCGCTTCAACCGATttaatta < 4:937410/140‑1 (MQ=255)
gggATAGCGTAGT‑TTATT‑TTTTTCGA‑TTTTGCCAACTACAAAATAGCCAGGACCAAA‑GATGTCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACa < 6:931786/139‑1 (MQ=255)
aTAGCGGCGT‑TTATT‑TTTATCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAg < 2:512992/138‑1 (MQ=255)
tgcggctT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGAACCAAA‑GATTGCATCATCGGTGTTCTCTATAGTGGTGGGCTGAATACGATCCTGCGAAAAGTTTGCCGCTTCATCCGCTTTAATTAACAGTGAg < 5:709475/139‑1 (MQ=255)
ttATT‑TTTTTCGA‑TTTTGCCAACTCCAAAATAGCCTGTACCAAA‑GATGGCATCTTCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCttttt < 5:996733/140‑1 (MQ=255)
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CCGTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATT‑TTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAA‑GATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTT > NZ_CP022686/1859928‑1860199
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
