Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,833,745 |
T→G |
18.4% |
N468H (AAC→CAC) |
gspD ← |
type II secretion system secretin GspD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,833,745 | 0 | T | G | 18.4%
| 259.8
/ 10.7
| 153 | N468H (AAC→CAC) | gspD | type II secretion system secretin GspD |
| Reads supporting (aligned to +/- strand): ref base T (39/81); new base G (31/2); total (70/83) |
| Fisher's exact test for biased strand distribution p-value = 1.16e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 159 total aligned reads displayed.
TATTGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCA > NZ_CP022686/1833607‑1833881
|
tATTGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGttt > 4:309627/1‑140 (MQ=255)
tGAAAGTATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTg < 8:160529/140‑1 (MQ=255)
tGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGGGGAGAGCACGTTCGATCTGGAGTCGTTtgtg > 2:353838/1‑140 (MQ=255)
tGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGGTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTg < 8:164325/140‑1 (MQ=255)
taaaGGAGTGCGTTTATTAGAGACAACAGTAGAGCCGGTTAATACCGGAACGTACTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 4:362135/139‑1 (MQ=255)
gAAAGGATTGCTGTTATTAGCGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 8:713604/140‑1 (MQ=255)
gAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 1:464365/140‑1 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAAGAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGATGAAGTCTTCCTGGTTGTCCAGAGTGGTGATACTCGGCGTGGTGAGCACGTTCGAGCTGGAGTCGTTTTTgtc < 2:124001/140‑3 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGtgtttttc > 3:293325/1‑137 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATAAAGAAGGCTTCCTGGTTGTCCCGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTggc > 8:511510/1‑138 (MQ=255)
aGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGAccc > 4:400270/1‑139 (MQ=255)
gATTGCTGTTCTTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 2:142917/140‑1 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAccc > 6:725636/1‑137 (MQ=255)
aTTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTGCGCGCTGGAGTCGTTTTTTACcccca > 8:811063/1‑139 (MQ=255)
aTTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATAACGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGGACGccg > 4:559668/1‑139 (MQ=255)
tGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTCCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTAACGCCGGt > 1:548338/1‑140 (MQ=255)
tGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCGTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGTACGTTCGAGCTGGAGTCGTGTTTGACCCCCTGt > 2:428660/1‑140 (MQ=255)
ttggttttaGATCCAACAGTAGAGCCGGTTAATAGCTGAACTTCCTGGACCAACATGAAGAAGTCTTCCTGGTTTTCAAGAGTGGTGATACTCGGAGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTAc < 7:806841/134‑1 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCCCCAGTACCaccc > 1:169892/1‑137 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAg < 6:459782/138‑1 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCCTc > 2:572563/1‑140 (MQ=255)
aCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTGTTTACCGCCTGTACCCGCGCCCTCCCGTc > 1:620638/1‑140 (MQ=255)
ccGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa > 7:54485/1‑106 (MQ=255)
ccGGTTAATACCGGAACGTACTGGCCCACCATGAAGAATGCTTCCTGGTTGTCCAGCGTGGTGATACTCTGAGTGGAGAGCAAGTTCGAGCAGGAGTCGTTTTTGACCGCCTGTACCAGCCCCAAGCAGTCGcatataac > 3:889174/1‑133 (MQ=255)
cGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTca < 5:724502/138‑1 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCCGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGCGTCGTGTTTGACCGCCTGGTCCAGCGCCCTCCAGTAGCCGTTgacccc > 8:322161/1‑138 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa > 2:561787/1‑103 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCTGTACCAGCGCCCTCCAGGAGCCGTTcaccac > 1:119014/1‑140 (MQ=255)
tAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTACCAGCGCCATCCAGTAGCCGTTAACCACGc > 3:675381/1‑140 (MQ=255)
ccGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTCCGCCGGTTCCAGCGCCCTCCAGTCGCCGTTGACCACGccca > 6:177364/1‑136 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGGTCCAGCGCCCTACCGTCGCCGTTCACCCCGCCAAccgcc > 4:330965/1‑140 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTGTTTACCGCCGGTGCCAGCGCCCACCAGTCGCCATTGCCAACGCCCCccgcc > 8:238675/1‑140 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCCCCAGTACACGCGCCAACACGGAGCCTTTAACCCCCCCAAccgcc > 8:466307/1‑140 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCTGGAACAGCGCCATACAGTCGCCGTTCACCCCGCCAAccgcc > 3:424728/1‑140 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGCCCGCCGGTACCAGCGCCCTCCCGTGGCCGTTAACCCCGCCCAccgcc > 8:537893/1‑140 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGGACCAGCGCCCTCCAGGCGCCTTTCCCCACGCCACccgcc > 2:675431/1‑140 (MQ=255)
gAACGACCTGGCCCCCCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGACGTTTTTGCCCCCCAGTAACACCGCCCACCAATCGCCGTTGACCCCCCCCAccccc > 7:150697/1‑140 (MQ=255)
aCGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGt < 2:237990/140‑1 (MQ=255)
cGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTa < 4:240144/140‑1 (MQ=255)
cGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGGCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTa < 7:371030/140‑1 (MQ=255)
tCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGAACCCCTGGTCCCGCGGCCTCCACGGGCCGTTAACCCCGCCACcccccgggac > 3:869436/1‑136 (MQ=255)
cTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGGACCACCGCCATGCAGGCGCCGTTAACCCCGCCCAccgcccgacc > 6:709095/1‑133 (MQ=255)
tGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCCACCGCCGTACCg < 6:357621/138‑1 (MQ=255)
gCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCt < 6:559009/138‑1 (MQ=255)
caccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTaaa < 5:177364/138‑1 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTGCCGCCGGTACCAGCGCCCAACCGTAGCCATTAACCACGCCAACCCCCCGACCGCGAAATCCa > 2:917954/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCCACCGCCGTACCCCGAAAGccc > 4:846001/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCAGTTCCAGCGCCATCCAGGAGCCATTACACACGCCACCCGCAGGTCCGCTAAAGccc > 3:587755/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCTGTACCAGCGCCATCCCGTCGCCGTTAACCAAGCCAACCCCCCTACCGCAAAACCCa > 2:381053/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGCACGCCGGTACCCGCGCCATACAGTAGCCGTTCAACCCGCCCACCCCCGGACCGCAAAAGccc > 4:630807/1‑139 (MQ=255)
aTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGt > 5:895492/1‑84 (MQ=255)
aTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGt < 6:895492/84‑1 (MQ=255)
aTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCCGGTCCACCGCCCTCCCGGGCCGCTTCACCCCGCCCACCCCCGGCCCGCaaaaagcc > 6:184458/1‑134 (MQ=255)
agaagGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCagaaaga < 4:251592/140‑1 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCAGTACCCGCGCCCTCCCGGCGCCGTTAACCCCGCCCACCCCCGGACCGCGAAAGCCAGAAAGAAACTg > 7:97311/1‑140 (MQ=255)
cTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCCCCGGTACCACCGCCCTCCCGTCGGCTTTGAACCCGCCAACCGCCGGACAGCGAAATCCagaaataatcg > 6:704554/1‑135 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGTTACTCGGCGTGGAGAGCCCGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 1:27526/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATCCTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTATCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 2:61813/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 4:293325/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 8:142517/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTg < 5:226397/138‑1 (MQ=255)
tgccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 2:185933/138‑1 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCCACCGCCGTACCGCGAAAGCCAGCAAGAAGCTgagcg > 4:509374/1‑140 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTATTACAGCGCCATACAGTCCCCATAGACCAACCCACCCCCCGTAACGCATAAACCAGCAACAATCGgagcg > 8:617343/1‑140 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCCCCGGTACCAGCGCCCTCCCGGCGCCTATAGCCCCGCCCACCCCCCGACCGCGCAAGCCAGCAAGAAGcggcgcc > 7:263639/1‑134 (MQ=255)
cTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagcga < 3:264500/140‑1 (MQ=255)
tCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCAGTACCCGCGCCCTACAGTCGCCATTAACCACCCCAACCGCCCGACCGCTAAAGCCAGAAAGAAGCAGAGCGAGCGTggg > 2:463478/1‑139 (MQ=255)
aGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGgagag < 1:381053/140‑1 (MQ=255)
gCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAACGACTGTACCAGCGCCAACCAGTCGCCTTTAACCACCCCCACCCCCCTACCCCTAAAGCCAGAAAGAAGCTTACCGAGCGTGgaca > 6:423754/1‑136 (MQ=255)
gCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGgagaga < 1:511477/140‑1 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGAt < 4:453841/140‑1 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGGCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGAt < 7:702346/140‑1 (MQ=255)
cGTGGTGATACTCGGCGGGGAGAGCCCGGTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGACAGACGCTGAGCGAGCGTGGAGAGAt < 3:395731/140‑1 (MQ=255)
ggtgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCGGTGCCCGCGCCAACCAGTCGCCTTTCACCCCGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGCGAGATc > 6:363638/1‑138 (MQ=255)
tgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCGGTACCAGCGCCATCCCGTAGGCGTTCAACCCGCCCACCCCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGGGGAGAGATGGccc > 4:13432/1‑139 (MQ=255)
cGGCGTGGAGCGCACGTTCGAGCTGGAGTCGttttt > 6:798399/1‑36 (MQ=255)
cGGCGTGGAGAGCACGTTCGAGCTGGAGTCGttttt < 5:798399/36‑1 (MQ=255)
cGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCGGTACCAGCGCCCTCCAGTCGCCGTTGACCACCCCAACCCCCGTACCGCGAAAGCCAGAAATAAGCTGAGGGCGCGGGGGGGGCTCGCCGGTAGt > 6:849890/1‑138 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGGCGTTTTTGACCGCCTGTACCAGCGCCATCGAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 2:849634/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGAGGGAGTCGTTTTTGCACCCCTGGACCCACGCCAGCCAGTCGCCGTTAACCACGCCACCCCCCGGACCGCTGAACCCCCCAAGAAGCTGAGCGAGCGGGGTGAGCTAGCCCGTAGGATc > 8:75726/1‑140 (MQ=255)
tGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCggg < 4:85009/140‑1 (MQ=255)
gggAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCg < 5:514117/137‑1 (MQ=255)
gggAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCCCGCCAACCGCCGTACCGCTAAAGCCAGAAAGACGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCg < 5:514119/137‑1 (MQ=255)
gggAGAGCACATTCGAGCGGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCggg < 7:691056/139‑1 (MQ=255)
gCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGTTCCCCCGCCATCCCGTCGCCGTTCCCCCCCCCCACCGCCGGACCGCAAAAGCCAGAAAGAAGCTGATCGAGCGGGGAGAGATCGGCGTTAGTATCCGGGGTAAtg > 4:49831/1‑140 (MQ=255)
cACGTTCGAGCTGTAGTCGTGTTTTACCGCCAGTAACAGCGCCCTCCAGTGGCCATTCCCCCAGCACACCGCCGTACCGCTAAAGCCAGAAAAAACCGGAGCGCGCGTGGAGAGATCGCAGTTATGATACGGGTTAAtgg > 4:431129/1‑140 (MQ=255)
cACGTTCGAGCTGGAGTCGTGTTTGACCGCCGGTTACAGCGCCCTCCAGTCCCCTTTAACCCCGCCCACCGCCGGACCGCGAAAGCCAGAAATAAGCGGAGCGAGCGTGGGGGGATCGCCGTTAGTATCCGGGTTTAtgg > 8:748622/1‑140 (MQ=255)
gTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAACGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAAtggtgg < 3:650045/140‑1 (MQ=255)
gTTCGAGCTGGAGTCGTTTTTGAACGCCGGGTCCCCCGCCATCCAGTCGCCTTTAACCACGCAAACCGCCGTACCGCTAAAGCCAGAAAGAATCTGAGCGAGCGTGGTGAGATCGCCCTTAGTATCCGCGTTAAtggg > 6:825647/1‑137 (MQ=255)
gAGCTGGAGTCGTTTTTGACCGCCTGTCCCAGCGCCATCCAGTCGCCTTGCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTa < 6:656361/138‑1 (MQ=255)
gAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAgc < 7:401961/140‑1 (MQ=255)
gAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAgc < 7:533224/140‑1 (MQ=255)
gAGCTGGAGTCG‑TTTTGACCGCCTGTTCCAGCGCCATCCAGTCGCCGTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGCGCGGGGAGAGATCGCCGTTAGTATCCGGGTTAATGGGTGTAg > 6:289573/1‑138 (MQ=255)
aGCTGGAGTCGTTTTTGAACGCCAGTAACAGCGCCAAACAGTAGCCATTAACACCGCCCACCCCCGTACCGCTAAAGCCACCAAGAAGAGGAGCCGGAGGGGAGAGATCGCCGTGAGTATCCGGGGTATTGGTGGTAgcg > 2:879679/1‑140 (MQ=255)
aGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGt < 5:905732/138‑1 (MQ=255)
tCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTTGTAGCGCCGTTTTc < 1:651308/140‑1 (MQ=255)
cGTTTTTGACCTCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGATAGAAGCTGAGCGAGCGTGGAGAGAGCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGtttt < 5:234006/138‑1 (MQ=255)
cGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGATCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCa < 8:343734/140‑1 (MQ=255)
cGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCa < 4:614062/140‑1 (MQ=255)
cGTTTTTGACCGCCTGTACCAGCGCCATCCAGGCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGtttt < 5:849890/138‑1 (MQ=255)
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TATTGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCA > NZ_CP022686/1833607‑1833881
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
