Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,833,749 |
G→T |
16.4% |
V466V (GTC→GTA) |
gspD ← |
type II secretion system secretin GspD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,833,749 | 0 | G | T | 16.4%
| 377.2
/ 14.9
| 193 | V466V (GTC→GTA) | gspD | type II secretion system secretin GspD |
| Reads supporting (aligned to +/- strand): ref base G (61/94); new base T (36/2); total (97/96) |
| Fisher's exact test for biased strand distribution p-value = 1.44e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 194 total aligned reads displayed.
GAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAT > NZ_CP022686/1833611‑1833886
|
taaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 7:456014/139‑1 (MQ=255)
gAACGGATTGCTGTTATTTGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 6:207696/140‑1 (MQ=255)
gAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCGTCCTGGGTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 8:266575/140‑1 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTgtc > 2:317795/1‑138 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACATCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGaa > 5:515237/1‑139 (MQ=255)
aGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGAc > 3:101441/1‑138 (MQ=255)
ggATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGGGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGAcc < 3:414879/138‑1 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGTGCTGGAGTCGTTTTTGACCGcc < 8:394019/140‑1 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCg > 3:692289/1‑138 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 2:651370/140‑1 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 8:200116/140‑1 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 2:668518/140‑1 (MQ=255)
aTTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCATCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTGTTGACAGccg > 6:346791/1‑139 (MQ=255)
aTTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGCGCACGTTCGAGCTGGAGTCGTGTTTTAACGccg > 5:6381/1‑139 (MQ=255)
aTTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGc > 4:803124/1‑138 (MQ=255)
tgatGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTATTAcctcct > 4:1054862/4‑138 (MQ=255)
cTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTAc < 8:375738/140‑1 (MQ=255)
cTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTAc < 5:560613/140‑1 (MQ=255)
attaGAGCCAACCTTCGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGCAGAAGGCTGCCTGGGTGGCCAGCGTGGGGATACTCGGAGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAgcg < 7:132464/140‑1 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGGCCGCCTGTACCAgcg > 2:948469/1‑140 (MQ=255)
agagCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTCCGCCTGTACCAGCGccc > 2:1033435/1‑139 (MQ=255)
agagCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCa > 2:528033/1‑140 (MQ=255)
agagCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCa < 2:1709/140‑1 (MQ=255)
cccAACATTAGATCCGGTTACTACCGGAACGTCATGGCCCTCCATGGAGACTGCTTCCTGTTTGTCCAGCGGGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGTACCAGCGCCATcc < 6:622401/139‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGCGCTGGAGTCGTGTTTTACCGCCTGGTCCCGCGcccgccccg > 7:440372/1‑133 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCCCCGGTTCCCGCGcccaacaca > 2:1023461/1‑133 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 1:18839/140‑1 (MQ=255)
cAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTCCGCCGGTTCCCGCGCCATACAGGCg > 6:380188/1‑140 (MQ=255)
tAGAGCCGGTTAATTCCGGAACGTCCTGGCCCACCTTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATTCTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑t < 8:1037331/140‑1 (MQ=255)
gagCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGGTTTCCCGCCGGTACCCGCGGCCTCCCGTCggcg > 4:512868/1‑135 (MQ=255)
ggTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTGCCGCCGGTTCCAGCGCCCTCCCGTGGCC‑GTTcaa > 3:565262/1‑137 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCCGCGCCATCCACTCGCC‑TTTcacccc > 8:78863/1‑138 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCCTCCAGTCGCC‑GTTcacccc > 6:897893/1‑138 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGGC‑GTTaaccac > 6:16504/1‑140 (MQ=255)
tAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGTACCAGCGCCCTCCAGTCGCC‑GTTcaccaccc > 6:1055741/1‑138 (MQ=255)
aaTCCCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGcc < 1:259907/140‑1 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGGTTCCTGGTTGTCCAGCGTGGTGATACTCGGCTTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGACGACGGTACCAGCGCCCTCCACGCGCC‑TTTCTCCACGACCA‑acgcc > 5:808014/1‑140 (MQ=255)
aaCGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCTGGTCCAGCGCCCGCCCGTCGCC‑GTTACCCCCGCCAc‑cccccc > 7:15157/1‑139 (MQ=255)
cGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTa < 2:626411/140‑1 (MQ=255)
tGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGCGCTGGAGTCGTGTTTGACCGCCTGTAGACGCGCACTGCAGGCGCC‑GTTACCCACCCCAA‑CCCCCGTACCGcg > 7:854554/1‑139 (MQ=255)
ggCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACAGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGc < 4:984641/138‑1 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGCGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCCGTTCCCGCGCCCTCCCGTCGGC‑ATTCAACCCCCCCC‑CCGGCGGACCCCGAAAGccc > 1:1022464/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCCCGTTCGAGCTGGAGTCGTGTTTGAGCGCCTGTACCAGCGCCATCCAGTCGCC‑GTTCTCCACGCCCA‑CCGCCCGTCCCCTAAAggcc > 7:525758/1‑137 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCGGTTCCAGCGCCCTCCAGTCGCC‑GTTAACCCCGCCAA‑CCCCCGTACCGCGAAAGccc > 2:59883/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCTGGTCCAGCGCCCTCCAGGCGGC‑CTTGACCCCGCCCA‑CCGCCGTACCGCGTAAGCCa > 8:669895/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACAGCCTGTACCCGCGCCATACAGTGGCC‑ATTCACCACCCCCA‑CCCCCGGACCGCTAAAGcac > 1:1030914/1‑138 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGGTTTTTGCCGCCGGGGCCAGCGCCCTGCCCTCGCCGTTTCA‑CACGCCCA‑CCCCCCGACCCCGAAAGccc > 5:3245/1‑139 (MQ=255)
gaTGAAGAAGGCTTCCTGGTTGTCCCGCGTGGTCAAACTCGGCGTGGCGAGCCCGTGCGAGCTGGAGTCGTGTTTGACCGGCGGAAGCAGAGCCATACACTCCGG‑CGTCACCACGCCAACCCGCCGGCCCGCTAAGGcgc > 2:78098/2‑138 (MQ=255)
caTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCCCGTTCGAGCTGGAGTCGTTGTTTGCCGCCTGTACCCGCGCCCTGCAGGAGGC‑AGTACCCACCCCCA‑CCCCCGGGCCGCGAAAGCCac > 1:457691/1‑139 (MQ=255)
aTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCa < 3:519900/138‑1 (MQ=255)
gctgacggCGTCCTGGTTGTCCAGCGTGGTTTTACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGGCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCaga < 4:697591/132‑1 (MQ=255)
aagGCTTCGTGGTTGGCGAGCGGGGGGATTCTCGGCGTGGAGAGCACGTTCGCGCTGGAGTCGTTTTTGTCCGCCTGTACCATCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAaagaag < 8:775136/140‑1 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCAGTACCACCGCCAAACCATCGCC‑TTTAAACACCCCAA‑CCCCCGGACCCCTAAAGCCCGAAAGAAGcgg > 2:742246/1‑138 (MQ=255)
ttCCTGTGTGTCCAGCGTTGTGATACTCGGCGGTGAGAGCACGTTCGATCTTGAGTCGTTTTTGACCTCCTGTACCAGAGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 7:683677/140‑1 (MQ=255)
ttCCTGTATGTCCTGAGTTGTGATACTCGGCGTTGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTACCCGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 2:76542/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTACGCCGGTAACAGCCGCATCCCCTCGCC‑ATTAAACACCCCAA‑ACGCCGTGCCGCTAAATCCagcaataaccgg > 3:113335/1‑134 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAACCCCGGTACCAGCGCCATACAGTAGCC‑GTTACCCACGCCAA‑CCGCCGGACCGGTAAAACCAGAAAGAAGCTgag > 6:860781/1‑140 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 7:507649/140‑1 (MQ=255)
tgccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 8:461954/138‑1 (MQ=255)
gtCCTGGTTGTCCAGCGTGGTGATACGCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGTAACAGCGCCATCCAGTCGCC‑TTTCACAACGCCAA‑CCGCCGTACCGATAAAGCCAGAAAGAAGATgag < 6:778806/139‑1 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagcg < 5:793847/140‑1 (MQ=255)
tGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGCCCGCCTGTACCCGCGCCATACCGGAGCC‑GTTCACAACGCCAA‑CCGCCGGACCGCGAAAGGCAGCAAGAAGCTGagcgagcggg > 7:709648/1‑138 (MQ=255)
gTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTGCCGGCGGTACCAGCGGCCTCCAGTCGGC‑TTTAACCACGCCAA‑CCGCCGGACCGCGAAACCCAGAAAGAAGCTGAGGGAGCGTgg > 8:168607/1‑140 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTTTAACCACGACCAACAGTCGAC‑TTTAAACACCCCAA‑CCACCGGAACCAGAAAGCCACATAAGAGCTGCGCGACCGGGgggagag > 6:556399/1‑139 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGAt < 2:448114/140‑1 (MQ=255)
tggtgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGAt < 4:918711/138‑1 (MQ=255)
ggtgATAGTGGGCGTGGAGATCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCTCCACGCCAT‑CCGCCGTACCTCTAAAGCCAGAAAGATGCTGAGCGAGCGTGGAGAGATCGc < 2:441197/140‑1 (MQ=255)
ggtgATACTCGGCTTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGc < 6:1010798/140‑1 (MQ=255)
tgATACTCGGCGTGGAGCGCACGTTCGAGCTGGAGTCGTTTTTTACCCCCGGTTCCACCGCCACCCACTCGCC‑GTTAACCCCGCCCA‑CCGCCGTACCCCGAAAGCCAGAAAGCAGCTGAGCGCGCGGGGTGAGGTCGCCg > 2:405859/1‑140 (MQ=255)
tgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCCGTACCACCGCCAACCCGGCGCC‑TTTAACCACCCCCA‑CCCCCGGACCGCGAAAGCCAGAAAGCAGCTGAGCGAGCGTGGGGAGATCGccc > 6:321708/1‑139 (MQ=255)
gATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGACATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGt < 2:258615/140‑1 (MQ=255)
aTACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGTACCCCCGGCCGCCCCTCGCC‑ATTCACCACCCCCC‑CCGCCGTTCCGCTAAACCCAGAAAGCAGCTGTGCGAGCGTGGCGAGGTAGCCg > 4:241378/1‑138 (MQ=255)
tACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGt < 3:748316/138‑1 (MQ=255)
ggCGTGGCGAGCACGTTCGAGCTGGAGGCGGTTTTGACCGCGTGTACCAGCGCCATGCTGTCGAC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGGGTAGAGATAGCCGTTAGTa < 3:979258/138‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGCCCGCCAGTACCAGCGCCCTCCAGGCGCC‑TGTCACCCCGCCCC‑CCGCCGGACCGCTAAACCCAGAAAGCACGAGAGCGAGCGGGTCGCGATCGCCGTTAGTATc > 2:914223/1‑140 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTa < 4:353372/138‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 2:468092/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCGGTACCAGCGCCATCCAGGCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCGAAAGCCAGAAAGGAGCTGAGCGGGCGTGGAGCGATCGCCGTTTGTTTc > 7:236902/1‑140 (MQ=255)
ggCGTGGAGAGCACGTGCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTa < 3:264660/138‑1 (MQ=255)
cGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGCCCCCCGGTACCAGCGCCCTCCAGGAGCC‑TTTCAACACGCCAA‑CCGCCGGACCGCGAAAGCCAGAAAGGAGCGTGGCGGGCGGGGTGAGCTCGCCGTTAGTTTc > 4:442855/1‑138 (MQ=255)
tGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCGGTACCACCGCCCACCAGGAGCC‑GTTAACCCAGCCCA‑CCCCCCTACCGCTTAAGGCCTAAACAAGCTGCGCGGGCGTGGAGAGATAGCCGTTAGGATCCg > 4:874895/1‑138 (MQ=255)
tGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCggg < 2:42337/140‑1 (MQ=255)
tgCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTCCCCGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTATAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAAt < 7:813932/139‑1 (MQ=255)
tgCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCAACACGCCAA‑CCGCCGTACCGCTAAAGGCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAAt < 2:871145/139‑1 (MQ=255)
cGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCCTCCAGTCGCC‑GTTCACCCCGCCAA‑CCGCCGTACCGCGAAAGCCAGAAAGAAGCTGAGCGGGCGGGGTGAGATCGCCGGTAGGATCCGGGTTAAtgg > 4:573888/1‑138 (MQ=255)
gAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTa < 4:131726/138‑1 (MQ=255)
gAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAgc < 5:820979/140‑1 (MQ=255)
gAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAgc < 5:423867/140‑1 (MQ=255)
aGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATACCGTCGCC‑GTTAAACACGCCAA‑CCCCCGGACCGCGAAAGGCAGAAATAAGCGGAGCGGGCGTGGAGTGATCGGCGGGATGATGCGGGGTTATGGTGGTAgcg > 6:123338/1‑140 (MQ=255)
ggATTCGTTTTTGACCGCATGTACCAGCGCCAGCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGt < 2:1055094/140‑1 (MQ=255)
ggAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCATAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGt < 6:748106/140‑1 (MQ=255)
aGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGttt < 7:30662/140‑1 (MQ=255)
cttttttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACAACGCCAA‑CCGCCGTACCGCTAAATCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCa < 1:215838/138‑1 (MQ=255)
tttttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACt < 5:28724/140‑1 (MQ=255)
ttGACCGCCTTTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGGCAGAATGAAGCTTAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGTGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 2:389206/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 7:579109/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 7:990811/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 5:321708/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 1:579416/140‑1 (MQ=255)
ttGACCGCCTGAACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 7:408322/140‑1 (MQ=255)
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GAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAT > NZ_CP022686/1833611‑1833886
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
