Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,833,762 |
A→C |
16.4% |
L462R (CTG→CGG) |
gspD ← |
type II secretion system secretin GspD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,833,762 | 0 | A | C | 16.4%
| 285.4
/ 10.7
| 167 | L462R (CTG→CGG) | gspD | type II secretion system secretin GspD |
| Reads supporting (aligned to +/- strand): ref base A (51/84); new base C (30/2); total (81/86) |
| Fisher's exact test for biased strand distribution p-value = 3.42e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 167 total aligned reads displayed.
ATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGATCACCGTGGAGC > NZ_CP022686/1833626‑1833897
|
attaGAGCCAACCTTCGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGCAGAAGGCTGCCTGGGTGGCCAGCGTGGGGATACTCGGAGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAgcg < 7:132464/140‑1 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGCGCACGGTCGAGCTGGAGTCGTGTTTGACCGCCGGTACCAgcg > 2:497514/1‑140 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTGACGCCTGTACCAgcg > 2:579416/1‑140 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGGCCGCCTGTACCAgcg > 2:948469/1‑140 (MQ=255)
agagCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCa < 2:1709/140‑1 (MQ=255)
gagCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCaa > 2:673316/1‑139 (MQ=255)
gCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTCCGCCAGTACCACCGcccacc > 5:496142/1‑136 (MQ=255)
cccAACAGTAGAGCCGGTTAATACCGGTACGTCCTGGCCCACCATGAAGATGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATcc < 8:1015683/139‑1 (MQ=255)
cccAACAGTAGAGCCGGTTAATACCGGAACGGCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATcc < 6:622394/139‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGCGCTGGAGTCGTGTTTTACCGCCTGGTCCCGCGcccgccccg > 7:440372/1‑133 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCCCCGGTTCCCGCGcccaacaca > 2:1023461/1‑133 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCa < 4:48081/138‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 1:18839/140‑1 (MQ=255)
cAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTCCGCCGGTTCCCGCGCCATACAGGCg > 6:380188/1‑140 (MQ=255)
agCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTCAGCCTGTTCCCCCCCCAACCAGTCGCC‑gtta > 1:258615/1‑139 (MQ=255)
ggTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGAGCCATCCAGTAGCC‑TTTaac > 4:89037/1‑138 (MQ=255)
ggTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTGCCGCCGGTTCCAGCGCCCTCCCGTGGCC‑GTTcaa > 3:565262/1‑137 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCCGCGCCCTACAGTCGCC‑GTTgcccac > 2:636115/1‑140 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCCGCGCCATCCACTCGCC‑TTTcacccc > 8:78863/1‑138 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCCTCCCGTCGCC‑GTTcaccac > 8:291176/1‑140 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCCTCCAGTCGCC‑GTTcacccc > 6:897893/1‑138 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGGC‑GTTaaccac > 6:16504/1‑140 (MQ=255)
tAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGTACCAGCGCCCTCCAGTCGCC‑GTTcaccaccc > 6:1055741/1‑138 (MQ=255)
aaCCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCaa < 5:307120/139‑1 (MQ=255)
cccGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑c < 5:815869/139‑1 (MQ=255)
aCCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑c < 2:923907/140‑1 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGGTTCCTGGTTGTCCAGCGTGGTGATACTCGGCTTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGACGACGGTACCAGCGCCCTCCACGCGCC‑TTTCTCCACGACCA‑acgcc > 5:808014/1‑140 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCGGTACCCGCGCCATCCAGTCGCC‑ATTCAccccgcccc‑ccgcc > 5:882592/1‑140 (MQ=255)
aaCGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCTGGTCCAGCGCCCGCCCGTCGCC‑GTTACCCCCGCCAc‑cccccc > 7:15157/1‑139 (MQ=255)
cGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTa < 2:626411/140‑1 (MQ=255)
tCCTGGCCAACCATGAAGAAGGCTTACTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTAATTGCCGCCTGAACCAACGCCATCCAGTCGCC‑GATACCCCCCCCCA‑CCGCCGGAcc > 2:910373/1‑140 (MQ=255)
tGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGCGCTGGAGTCGTGTTTGACCGCCTGTAGACGCGCACTGCAGGCGCC‑GTTACCCACCCCAA‑CCCCCGTACCGcg > 7:854554/1‑139 (MQ=255)
ggCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACAGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGc < 4:984641/138‑1 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGCGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCCGTTCCCGCGCCCTCCCGTCGGC‑ATTCAACCCCCCCC‑CCGGCGGACCCCGAAAGccc > 1:1022464/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCCCGTTCGAGCTGGAGTCGTGTTTGAGCGCCTGTACCAGCGCCATCCAGTCGCC‑GTTCTCCACGCCCA‑CCGCCCGTCCCCTAAAggcc > 7:525758/1‑137 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCTGGTCCAGCGCCCTCCAGGCGGC‑CTTGACCCCGCCCA‑CCGCCGTACCGCGTAAGCCa > 8:669895/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACAGCCTGTACCCGCGCCATACAGTGGCC‑ATTCACCACCCCCA‑CCCCCGGACCGCTAAAGcac > 1:1030914/1‑138 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGGCTGGTCCCGCGCCCTCCAGTGGGC‑GTTGCCCCCGCCCA‑CCGCCGGGCCGCAAAAGccc > 2:153387/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGTACCCGCGCCCTCCCGTCGGC‑TTTCACCACGCCCA‑CCGCCCGACCCCTAAAGccc > 2:373070/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGGTTTTTGCCGCCGGGGCCAGCGCCCTGCCCTCGCCGTTTCA‑CACGCCCA‑CCCCCCGACCCCGAAAGccc > 5:3245/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTGCGAGCTGGAGTCGTGTTTGACCGCCTGTGCCCGCGACAAGCCGTCTGC‑GATCACCACGCCCC‑CCGACGTCACGCTAAAGCCa > 6:75220/1‑140 (MQ=255)
gaTGAAGAAGGCTTCCTGGTTGTCCCGCGTGGTCAAACTCGGCGTGGCGAGCCCGTGCGAGCTGGAGTCGTGTTTGACCGGCGGAAGCAGAGCCATACACTCCGG‑CGTCACCACGCCAACCCGCCGGCCCGCTAAGGcgc > 2:78098/2‑138 (MQ=255)
caTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCCCGTTCGAGCTGGAGTCGTTGTTTGCCGCCTGTACCCGCGCCCTGCAGGAGGC‑AGTACCCACCCCCA‑CCCCCGGGCCGCGAAAGCCac > 1:457691/1‑139 (MQ=255)
caTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCCGCGCCCTCCAGTCGCC‑TTTCACCACGCCCA‑CCGCCGTACCGCTAAAGCCaa > 7:694472/1‑139 (MQ=255)
aTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCa < 3:519900/138‑1 (MQ=255)
gctgacggCGTCCTGGTTGTCCAGCGTGGTTTTACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGGCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCaga < 4:697591/132‑1 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCAGTACCACCGCCAAACCATCGCC‑TTTAAACACCCCAA‑CCCCCGGACCCCTAAAGCCCGAAAGAAGcgg > 2:742246/1‑138 (MQ=255)
cTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGAACCGCTGTTCCCGCGCCCACCAGTCGCC‑GTTACACACGCCCA‑CCACCCTTACCCTTAAGGCCGCAAGAAGcg > 3:70159/1‑137 (MQ=255)
ttCCTGTATGTCCTGAGTTGTGATACTCGGCGTTGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTACCCGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 2:76542/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTTACGCCGGTAACAGCCGCATCCCCTCGCC‑ATTAAACACCCCAA‑ACGCCGTGCCGCTAAATCCagcaataaccgg > 3:113335/1‑134 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAACCCCGGTACCAGCGCCATACAGTAGCC‑GTTACCCACGCCAA‑CCGCCGGACCGGTAAAACCAGAAAGAAGCTgag > 6:860781/1‑140 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGCCCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 6:694810/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 7:507649/140‑1 (MQ=255)
tgccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 8:461954/138‑1 (MQ=255)
gtCCTGGTTGTCCAGCGTGGTGATACGCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGTAACAGCGCCATCCAGTCGCC‑TTTCACAACGCCAA‑CCGCCGTACCGATAAAGCCAGAAAGAAGATgag < 6:778806/139‑1 (MQ=255)
tCCTGGTTGTCCAGGGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagc < 7:619380/140‑1 (MQ=255)
tCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTGCCGCCTTGACCCCCGCCCAGCAGTCGCC‑TTTCACCCCGCCCA‑CCGCCGGAGCGCGAAATCCACAaagaagaggcgc > 7:424629/1‑134 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagcg < 5:793847/140‑1 (MQ=255)
ggTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagcgagc < 2:606718/140‑1 (MQ=255)
tGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGCCCGCCTGTACCCGCGCCATACCGGAGCC‑GTTCACAACGCCAA‑CCGCCGGACCGCGAAAGGCAGCAAGAAGCTGagcgagcggg > 7:709648/1‑138 (MQ=255)
gTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTGCCGGCGGTACCAGCGGCCTCCAGTCGGC‑TTTAACCACGCCAA‑CCGCCGGACCGCGAAACCCAGAAAGAAGCTGAGGGAGCGTgg > 8:168607/1‑140 (MQ=255)
cAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCGCCTGTACCACCGCCCTCCAGTCGCC‑GTTCACCCCGCCCA‑CCCCCGGACCCCGAAATCCACAAACAAAGAGAGCGAGCGTggggg > 6:1020078/1‑137 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTTTAACCACGACCAACAGTCGAC‑TTTAAACACCCCAA‑CCACCGGAACCAGAAAGCCACATAAGAGCTGCGCGACCGGGgggagag > 6:556399/1‑139 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGAt < 2:448114/140‑1 (MQ=255)
tggtgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGAt < 4:918711/138‑1 (MQ=255)
ggtgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGc < 7:893648/140‑1 (MQ=255)
ggtgATACTCGGAGTGGAGAGCTCGTTCGAGCTTGATTCGTTTTTGACGGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAT‑CCGCCGTACCGCTAAAGCCAGAATGAAGCTGAGCGAGCGTGGAGAGATCGc < 2:435591/140‑1 (MQ=255)
gggtaTACTCGGCGAGGAGAGGAAGTGCGAGGTGGAGTCGGTTTTTACCGCCTGTACCAGCGCCAGCCAGTGGCC‑TTTCACCACGCCAA‑CCGCCTTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGc < 8:438213/136‑1 (MQ=255)
tgATACTCGGCGTGGAGCGCACGTTCGAGCTGGAGTCGTTTTTTACCCCCGGTTCCACCGCCACCCACTCGCC‑GTTAACCCCGCCCA‑CCGCCGTACCCCGAAAGCCAGAAAGCAGCTGAGCGCGCGGGGTGAGGTCGCCg > 2:405859/1‑140 (MQ=255)
tgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCCGTACCACCGCCAACCCGGCGCC‑TTTAACCACCCCCA‑CCCCCGGACCGCGAAAGCCAGAAAGCAGCTGAGCGAGCGTGGGGAGATCGccc > 6:321708/1‑139 (MQ=255)
gATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGcc < 4:606015/138‑1 (MQ=255)
gATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGACATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGt < 2:258615/140‑1 (MQ=255)
aTACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGTACCCCCGGCCGCCCCTCGCC‑ATTCACCACCCCCC‑CCGCCGTTCCGCTAAACCCAGAAAGCAGCTGTGCGAGCGTGGCGAGGTAGCCg > 4:241378/1‑138 (MQ=255)
tACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGt < 3:748316/138‑1 (MQ=255)
ggCGTGGCGAGCACGTTCGAGCTGGAGGCGGTTTTGACCGCGTGTACCAGCGCCATGCTGTCGAC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGGGTAGAGATAGCCGTTAGTa < 3:979258/138‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTa < 4:353372/138‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 2:468092/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCGGTACCAGCGCCATCCAGGCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCGAAAGCCAGAAAGGAGCTGAGCGGGCGTGGAGCGATCGCCGTTTGTTTc > 7:236902/1‑140 (MQ=255)
ggCGTGGAGAGCACGTGCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTa < 3:264660/138‑1 (MQ=255)
gCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCAGTAACCGCGCCATCACGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCCCTAAATCCAGAAAGAAGATGATCGAGAGTGGAGATATAGACCTTAGTATcc > 2:1051958/1‑140 (MQ=255)
cGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGCCCCCCGGTACCAGCGCCCTCCAGGAGCC‑TTTCAACACGCCAA‑CCGCCGGACCGCGAAAGCCAGAAAGGAGCGTGGCGGGCGGGGTGAGCTCGCCGTTAGTTTc > 4:442855/1‑138 (MQ=255)
tGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCggg < 2:42337/140‑1 (MQ=255)
tgCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTCCCCGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTATAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAAt < 7:813932/139‑1 (MQ=255)
gCACGTTCGAGCTGGAGTCGTTTTTGCCCCCCGGTTCCCGCGCCATCCAGGCGCC‑GTTAACCCCGGCCA‑CCGCCGTACCCCTGAAGCCAGCAAGCAGCGGAGCGAGCGTGGTGAGAACGCCGGTAGGATACgggggtatg > 8:178912/1‑134 (MQ=255)
aGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATACCGTCGCC‑GTTAAACACGCCAA‑CCCCCGGACCGCGAAAGGCAGAAATAAGCGGAGCGGGCGTGGAGTGATCGGCGGGATGATGCGGGGTTATGGTGGTAgcg > 6:123338/1‑140 (MQ=255)
cttttttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACAACGCCAA‑CCGCCGTACCGCTAAATCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCa < 1:215838/138‑1 (MQ=255)
cGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGtttt < 4:867882/138‑1 (MQ=255)
cGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCa < 2:810075/140‑1 (MQ=255)
ttGACCGCCTTTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGGCAGAATGAAGCTTAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGTGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 2:389206/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCTCC‑TTTAACCACGCCAA‑ACTCCGAACCGCTAAAGCCAGAAAGAATCTGTGCGAGAGTGGAGAGATCGCCGTTAGTATCCGGGGTAATGGTGGTAGCGCCGTTTTCACTGAt < 6:179335/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTg < 4:152434/138‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 1:579416/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 5:321708/140‑1 (MQ=255)
tGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTACACCACTCCAT‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGACGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGa < 4:518376/138‑1 (MQ=255)
ccTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGtttt < 5:457282/126‑1 (MQ=255)
ccTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGtttt > 6:457282/1‑126 (MQ=255)
ccTGTACCAGCGCCATCCAGTCGCC‑TTTAACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGCAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTGAGTATCCGGGTTAATGGTGGTAGCGCCGTTTACACTGATCCCCGTg > 6:901900/1‑140 (MQ=255)
gTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGATCACCGTGGAg < 6:413796/140‑1 (MQ=255)
gTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGATCACCGTGGAg < 7:389360/140‑1 (MQ=255)
tACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGATCACCGTGGAGc < 7:554928/140‑1 (MQ=255)
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ATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCC‑TTTCACCACGCCAA‑CCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGATCACCGTGGAGC > NZ_CP022686/1833626‑1833897
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
