Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,833,749 |
G→T |
15.6% |
V466V (GTC→GTA) |
gspD ← |
type II secretion system secretin GspD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,833,749 | 0 | G | T | 15.6%
| 313.4
/ 10.4
| 154 | V466V (GTC→GTA) | gspD | type II secretion system secretin GspD |
| Reads supporting (aligned to +/- strand): ref base G (41/84); new base T (27/2); total (68/86) |
| Fisher's exact test for biased strand distribution p-value = 1.39e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 156 total aligned reads displayed.
GAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAT > NZ_CP022686/1833611‑1833886
|
gAAAGGATTGCTGTTAGTAGAGCCATCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCACACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 6:403455/140‑1 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTggc > 7:380444/1‑138 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAc > 5:37391/1‑140 (MQ=255)
aaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGAcc < 4:618884/140‑1 (MQ=255)
aGGATTGCTGTTATTAGAGACAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTggacg > 5:733997/1‑136 (MQ=255)
ggATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTTGAGTCGTTTTTGACCGc < 1:845265/140‑1 (MQ=255)
ggATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGc < 3:319465/140‑1 (MQ=255)
ggATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGc < 6:259894/140‑1 (MQ=255)
gcgtGCGGTTATTCGCGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGGCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 1:256353/137‑1 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGCAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 6:77007/140‑1 (MQ=255)
gATTGCGGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGGGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 7:167952/140‑1 (MQ=255)
aTTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCt > 1:947810/1‑140 (MQ=255)
aTTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGAACGccg > 2:229427/1‑139 (MQ=255)
aTTGCTGATATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGGCccccg > 5:768054/1‑139 (MQ=255)
tGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGACCGTCCTGGCCCTCCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCGGGAGTCGTTTTTGACCGCCTgg > 2:917356/1‑139 (MQ=255)
tGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGACttt > 3:636839/1‑138 (MQ=255)
cTGTTATTCGAGCCACCAGTAGTGCCGGTTAATACCGGAACGTCCTGGCCAACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGTAGTCGTTTTTGACCGCCTGTAc < 5:125223/140‑1 (MQ=255)
cTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTAc < 4:787670/140‑1 (MQ=255)
cTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGGTCGAGCTGGAGTCGTTTTTGACCGCCTGTAc < 3:955582/140‑1 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCTTGGTGATACTCGTCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTGTACCGCCGTTTCCCGCGCCaac > 4:81459/1‑138 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGCTACTCGGCGTGGAGAGCACGGTCGAGCTGGAGTCGTGTTTTCCCGCCTGTTCCcgcggcgtc > 4:226405/1‑135 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAACGCCTGTAACCGCGGCAta > 8:233729/1‑139 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTAACCCCGGTTACAGCGCCAta > 8:791084/1‑139 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCAGTAACAGCGCCAta > 3:601548/1‑139 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 6:617506/140‑1 (MQ=255)
aaCAGTAGAGCCGGTTAAAACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 4:294052/140‑1 (MQ=255)
aaCAGTAGAGCATGTTAATACCGGAACGTCCTGGCCCACCATGAAGAATGCTTCCTGGTTGTCCAGCTTGGTTATACTCGGCGTGGAGAGCACGTTCTAGCTGGAGTCGTTTTTTACCTCCTGTACCAGCGCCATCCAGt < 5:513696/140‑1 (MQ=255)
cAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCTGGTCCAGCGCCATCCAGTCg > 6:768596/1‑140 (MQ=255)
gTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCAGTACCCCCGCCAAACAGTCGcc > 4:950099/1‑140 (MQ=255)
agCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCCCGTTCGAGCTGGAGTCGTTTTTGGCCGCCTGTACCAGCGCCATCCAGTCGCCgtta > 8:240742/1‑139 (MQ=255)
agCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTGCAGCCAGTAACAGCGCCATCCAGTCGCCgtta > 1:305734/1‑139 (MQ=255)
ccGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCCCCAGTAACCCCGCCAAACAGTAGccggtaac > 8:48609/1‑134 (MQ=255)
ccGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCGGTACCCCCGCCAGACAGTCGCCGTTaac > 6:303700/1‑140 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGTACCCGCGCCCTACAGTCGCCGTTcacccc > 3:442347/1‑138 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGAGTTTTTCCGCCGGTACCAGCGCCCTCCCCTCGCCGTTcacccc > 1:216468/1‑138 (MQ=255)
aaTACCGGAACGTCCTTGCCCACCATGAAGAAGGCTTCCTGGGTGTCCAGCGTTGTGATACTCTGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGcc < 3:859079/140‑1 (MQ=255)
cGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAAccg < 1:472390/140‑1 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCTAGCTGGAGTCGTGTTTGACCGCCTGTACCAGCGCCATCCAGTCGGCGTTAACCACGCCAAccgcc > 4:348043/1‑140 (MQ=255)
aaCGTCCTGGCCCCCCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAAccgccg < 7:233729/140‑1 (MQ=255)
aaCGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAAccgccg < 7:418801/140‑1 (MQ=255)
aaCGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTGGTCCAGCGTGGTGATACGCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAAccgccg < 2:238306/140‑1 (MQ=255)
cggccTGGCCCACCATGAAGAAGGCTTCCTGGTTGGCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTa < 2:255495/137‑1 (MQ=255)
cGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTa < 7:305462/140‑1 (MQ=255)
cGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTa < 5:894846/140‑1 (MQ=255)
tCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCCTCCAGTCGCCTTTCACCACCCCAACCGCCGTAcc > 6:546590/1‑140 (MQ=255)
tCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCGCCGGGAACAGCGGCAGCCAGGCCCCGTTGACCCCGCCCACCCCCGGAcc > 5:289543/1‑140 (MQ=255)
ccTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTGCCGCCCGTTACCGCGCCCTACCGTCGCCTTTACACACGCCAAccccccgaccc > 7:768500/1‑134 (MQ=255)
tGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGGTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCt < 6:695332/140‑1 (MQ=255)
gggCCCACCATGAAGAAGGCTTCCTGGGTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCt < 4:525758/139‑1 (MQ=255)
ggCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTa < 3:722323/140‑1 (MQ=255)
ggCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTa < 1:251400/140‑1 (MQ=255)
ggCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTa < 4:306154/140‑1 (MQ=255)
caccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGc < 1:59336/140‑1 (MQ=255)
caccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCCGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGc < 8:72648/140‑1 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGCTACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGGACCAGCGCCAGCCAGTAGCCTATGAACACGCCCACCGCCGTGCCGCTAAAGCCa > 6:488016/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTGCCGCCGGTAACAACGCCCACCATTCCCCGGTTACCCCCCCCACCCCCGTACCCCaaaaacac > 7:99487/1‑136 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAACGCCAGTACCACCGCCCACCAGTAGCCGTTACCCCCGCCCACCCCCGGACCCCTTAAGCCa > 8:441712/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACACGCAGTACCCTCGCCATACAGTGGCCTTTAACCACGCCAACCGCCGTAACGCTAAACCCa > 8:401012/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGTACCCGCGCCATCCAGTCGCCATTCACCACGCCCACCCCCCGTCCGCAAAAGccc > 8:435358/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGGGTTTGACCCGCGGGACCAGCGCCATGCAGTCGCCTTTCACCACGCCCCCCCCCCGACCGCTAAAGccc > 8:707936/1‑139 (MQ=255)
caTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACAAGCGCCATCCAGTCGCCGTTAACCCCGCCAACCGCCGTCGCGCGAAAGGCag > 6:603094/1‑140 (MQ=255)
aTGAAGAAGGCTTCCTGGTTGTCCATCGGGGTGATACTCGGCGTGGAGAGCACGTGCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCaga < 7:476453/140‑1 (MQ=255)
ggCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAACGCCTGTACCAGCGACATACAGGAGCCTTTAACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCt > 4:704756/1‑140 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGTCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTg < 4:347564/140‑1 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCAAGCCAACCCCCGTACCCCTAAAGCCAGAAAGAAGCTg > 8:388858/1‑140 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCGGTACCAGCGCCAACCCGTAGCCTGTCACCACGCCCACCCCCCTCACGCGAAAGCCAGAAATAAGcgg > 1:917212/1‑138 (MQ=255)
ttCCTGGTTGTCCAGCGTGGGGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGACAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 5:522479/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGGGGTGATACTCGGCGTGGAGAGCACGGTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 3:333105/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGCGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 1:530638/140‑1 (MQ=255)
ttCCTGGTTGGCCATCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTCCCGCCTGTACCAGCGCCATCCAGGCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 4:535399/140‑1 (MQ=255)
tgccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 5:106296/138‑1 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCAGTACACGCGCCCGCCCCTCGCCGTTGACCACGCCCACCGCCCGACCGCAAAAGCCCGAAAGAAGCGgacgc > 3:596031/1‑137 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCCCCTGTACCACCGCCAACCACTGGGCATTAACCCCCCCCACCGCCGGACCCCGAAAACCAGAAAAAAACAgagcc > 3:500280/1‑139 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGTCCGCCTGTACCAGCGCCATACAGTCGCCTTTCACCACGCCAACCGCCGTAACGCTAAAGCCATAAAGCAGCTgagcg > 6:382390/1‑140 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTGCCCCCGGTACCCGCGCCCGCCACTCGCCGTTGACCACCCCCACCCCCGGACCCCGAAAGCCCCAAAGAAGCTgagcg > 3:620433/1‑140 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGAACGCCAGTCCCAACCCCCACCAAGACCCGTTGACCCCGCCAACCCCCCGACCCCGAAAACCACAAAAAACCAgagcg > 8:44808/1‑140 (MQ=255)
ccTGGGTGTCCTGCGTGTTGATACTAGGCGAGTAGAGGACGGTCGAGCTGGAGTCGTTTTTGACCGACTGTACACGCGCCATCCTGTCTCCTTTCACCAGGCAATCCGCCGTACCGCTTAAGCAAGTAAGAAGATgagcg < 4:545851/140‑1 (MQ=255)
cTGGTTGTCCAGCGTGGTGAAACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTATGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagcga < 2:475744/140‑1 (MQ=255)
ttGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGGTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGGCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGt < 1:819831/140‑1 (MQ=255)
cAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCGGTACCAGCCCCCTCCAGTCGCCATTCACCCCCCCAACCCCCGGACCCCGAAAGACAACAAGAAGCTGAGCGAGCGTGgaga > 1:189354/1‑140 (MQ=255)
aGCGTGGTGATACTCGGCGTGGAGAGCACGGTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGgagag < 8:618990/140‑1 (MQ=255)
gCGTGGTGAGACGCGGCGTGGCGAGCCCGGTCGAGCTGGAGGCGTTTTTGCCCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTTAGCGAGCGTGgagaga < 4:229216/140‑1 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGAt < 2:947810/140‑1 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGATGGAGTCGTTTTTGAACGCATGTACCAGCGCCATCCAGTAGGCTTTCACCACGACAACCACCGTACCGCTAAAGACAGAAATCAGCTGAGCGAGCGGTGTGAGAt > 4:374908/1‑140 (MQ=255)
tgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTTCCAGCGCCATCCAGTCGCCTTTCACCACGCCCACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCg > 4:454025/1‑140 (MQ=255)
tgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTACCAGCGCCCTCCAGTCGCCGTTCACCCCGCCAACCCCCCTACCGCGAAAGCCAGAAAGAAGCTGAGCGAGCGTGGTGTGATGGCCg > 3:875187/1‑140 (MQ=255)
tgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGGCCGCCGGTTCCCGCGGCCTCCAGTCGCCGTTCACCCCGGCCACCGCCGGACCGCGTAAGCCAGAAATAAGCGGGGCGCGCGGGGGGAGCTGGCCg > 4:803799/1‑140 (MQ=255)
gATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGt < 5:295791/140‑1 (MQ=255)
cTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGt < 4:930598/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 3:762330/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 4:500280/140‑1 (MQ=255)
cGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGAACGCCGGTACCAGCGCCATCCAGTCGCCTTTAACCACGCCAAACGCCGTACCGCTAAAGCCAGAAAGAAGGTGAGCGAGCGTGGAGAGATGGCCGTTAGTATGCg > 6:841589/1‑140 (MQ=255)
cACGTTCGAGCTGGAGTCGTGTTTTAACCCCTGTAACCGCGCCATCCAGTCGCCTTTAACCACGCCCACCGCCCTACCGCTAAAGCCACAAAGAATCTGAGCGATCGGGGAGAGATAGCCGGTAGTATACGGGTTAAttg > 4:663309/1‑138 (MQ=255)
aGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCACTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTACTGGTGGTAgcg < 6:293571/140‑1 (MQ=255)
cTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGcc < 2:810698/140‑1 (MQ=255)
ggAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGt < 1:284017/140‑1 (MQ=255)
ggTTTTTGACCGCGTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAAGCGCCGTACCGCTAAAGCCAGACAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCa < 5:99353/139‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGTCGCATTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 3:748482/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGCCATCCAGGCGCCTTTCACCACGCAAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCTGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 6:708247/140‑1 (MQ=255)
ttGACCGCCTGTACCAGCGACATCCAGTCGCCATTCACCACGCCAACCGCCGTACAGCTAAAGCCAGAAAGAAGCTGCGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAt < 6:604150/140‑1 (MQ=255)
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GAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGCCAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACTGAT > NZ_CP022686/1833611‑1833886
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
