Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,077 |
G→T |
15.6% |
G116G (GGC→GGA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,077 | 0 | G | T | 15.6%
| 245.9
/ 12.3
| 106 | G116G (GGC→GGA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (8/79); new base T (17/2); total (25/81) |
| Fisher's exact test for biased strand distribution p-value = 7.93e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 119 total aligned reads displayed.
CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
|
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGcc < 3:241647/140‑1 (MQ=255)
tGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTAG‑AATTTTGCAAc > 3:129086/1‑140 (MQ=255)
taaTTCGACCGGCTTTATTCAATACCAGAATGTTTGAACTCTTCTCCGGCTATTGCCAGGCAACGCGTCCCAGAACATTGCCGTCAATAACGAATTGCGCCCTCTGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACg < 2:325575/139‑1 (MQ=255)
cGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCACCGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACaaa < 7:858864/140‑1 (MQ=255)
ggCTTTATTCACTACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑c < 8:680967/140‑1 (MQ=255)
ggCTTTATTCAATAGCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCTTTGCCGTGAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑c < 3:216456/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCACTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATa < 6:349293/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACataata < 5:896254/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAGAATa < 5:896258/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATa < 6:893917/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑c < 8:810365/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑c < 3:595596/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGGTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑c < 8:154391/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGATGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGGAAATAACGAATTGCGCCCTCGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATa < 6:724948/138‑1 (MQ=255)
ggCTTTATTCAAAACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGG‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑c < 3:360714/140‑1 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAg < 5:326190/138‑1 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTAG‑AATTTGCGAAAGCCaaaaaaacc > 2:201514/1‑135 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TGTTTTTTTTAG‑ATTTTGCAAAAGACaaaaaataa > 4:595596/1‑135 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGGAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCa < 8:749760/140‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCa < 4:765435/140‑1 (MQ=255)
tttAGTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGAAAGCGGCGT‑TTATTTTTTTCG‑ATTTTTCCAACGACAAAATAG‑cc > 5:698820/1‑138 (MQ=255)
aTTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TGTTTTTTTTGG‑ATTTTTGCAACGACAAAAAAG‑CCAGttc > 4:355838/1‑138 (MQ=255)
aTTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAT‑CTTTTTCCAACGACAAAAAAG‑CCAGTaa > 4:568625/1‑139 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTTTT‑TTTTTTCCAA‑GAAAAAAAAA‑CCAGTAcacaaaa > 1:518457/1‑134 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTTCG‑ATTTTTCCAACGACAAAATAG‑CCAGTAC‑CAAAGa > 4:632108/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTG‑TTTTTTGGAAAGCCAAAATAG‑ACAGTAA‑Caaaca > 1:513859/1‑138 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAT‑AATTAGACAACCACAAAATAA‑CCAGTAA‑CAAAGa > 1:872232/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCACACGGATAGCGGCGT‑GTATTTTTTTAG‑ATTTTGACAACCACAAAAAAG‑CCAGGAA‑CAAAGa > 2:583229/1‑140 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAg < 5:730770/138‑1 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTAG‑ATTTTTGAAACGACAAAATAT‑CCCGTAC‑Caaaaa > 5:422604/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGATCCGGCAATTGCCAGGCTCCGCGTCACAGCCCATTGCCGTCAATAACGAATTGCGCCCCCGGATATCGGCGT‑TTATTTTTTTGT‑ATTTTTCGGACACCAAAATAG‑GCAATAcaacagt > 6:75978/1‑132 (MQ=255)
gAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTAG‑TTTTTTGCAACCACAAAAAAA‑CCAGTAC‑CAAAAATggga > 4:932802/1‑138 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGcatcat < 3:125177/140‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTTAG‑ATTTTTGCAACGACAAAATAG‑CCCGTAC‑CAAAGATTGcatcata > 2:890655/1‑139 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTCG‑CTTTTTGCAACGACAAAAAAG‑CCAGTAC‑CAAACATGGcataaga > 8:602726/1‑136 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTTAG‑ATTTTGAGAAAGACAAAATAG‑CCAATACACAAAAAT‑Gcatcata > 4:119624/1‑139 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCg < 4:117090/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCg < 1:504371/140‑1 (MQ=255)
tGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTG‑ATTTTTCCAACCCCACAATAC‑CCAATAC‑CAAAACTGGcataata > 5:772186/1‑137 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGgt < 2:627315/139‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGgt < 2:354147/139‑1 (MQ=255)
gtaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGgt < 3:305077/138‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCg < 5:108337/138‑1 (MQ=255)
gAACTAGGCTCCTGCAATTGCCAGGCAACGCGTCCCGGACCATTGCCGTCAATACCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATTG‑CCCGGAC‑CTTAGATGGCATCATCg < 5:44633/138‑1 (MQ=255)
aaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGgtg < 4:869713/140‑1 (MQ=255)
ttctGCTGCGGGTATTGCCTGGCAAGGCGTCCCAGACCATTGCCGTAAATAACGAATTGCGCGCACTGATAGCGGCGT‑TTTTTTTTTTCG‑ATTTTGACAACGACAAAATAG‑CCAGTTC‑CAATGATGGCTTCATCGgtgtg < 1:37155/139‑2 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGgtg < 5:27445/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGgtg < 6:195397/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGtt < 2:284681/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGtt < 2:275173/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGtt < 1:414883/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGtt < 1:318140/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCACACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGtt < 7:109978/140‑1 (MQ=255)
tctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTc < 8:277243/140‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCATACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGtt < 5:496168/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCCGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGAGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACaa < 4:204861/140‑1 (MQ=255)
gCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAG‑ATTTTTGCACCGCCCACATAG‑CCCGGAC‑CAAATCTGGGAGCATCGGTGGGCACCATaagg > 4:600283/1‑137 (MQ=255)
tGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTggg < 4:493704/140‑1 (MQ=255)
ccAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTTGGCt < 4:219086/140‑1 (MQ=255)
ccAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCt < 2:876601/140‑1 (MQ=255)
cgcgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTTAG‑ATTTTGGCAACGACAAAATAG‑CCCGTTC‑CAAAGAATGGATCATAGGGGTTGACAAAAGTGGGGGGCTGAAAACGa > 2:678569/1‑140 (MQ=255)
cgcgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTATTTTAGTATTTTG‑CAACACCAAAAAAG‑ACACGAA‑CAAAGCAGTCCACAGAGGGGTTCACAAAAGAGGGGGGCTggtaaaca > 4:265764/1‑133 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTAG‑AATTTTACAACGGCAAAATAT‑ACAGTAC‑CAAAGATGGCCTAAACGGTGTTCACAATATTGTTGGGCTGAAAACAATCCTGCGAAAAGgtt > 2:578553/1‑140 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAG‑ATTTTTGCAACCACCAAATAGACCCTTAC‑CAAA‑AAGGGATAAACGGTGTTGACAATATTGTTGGGGTGGAAAACAACCTGCGCAAAAttt > 1:747331/1‑140 (MQ=255)
tCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGATTTTTTTCG‑ATTTTTCCAACGCCCAAAAAG‑CCACTAC‑CAAACAAGGGCACAACGGGGGTCACAAAATTGGTGGGCGGAAAACAAACCGGCGGAAACTTTGACGc > 8:389947/1‑140 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCaa < 7:19958/140‑1 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCaa < 3:119624/140‑1 (MQ=255)
ccgcaTTGCGCCCACGGATAGCGGCTG‑TTATTTTTTTAG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCa < 5:750027/134‑1 (MQ=255)
taaTTTCGCCCACGGTTAGCGGCGT‑TTATTTTTTTCG‑ATTTTTCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGTTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 6:672066/137‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 7:107278/140‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGACAACGACAAACTAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 1:580750/140‑1 (MQ=255)
aTTGCGCCCTCGGATAGCGTCGT‑TTATTTTTTTCG‑TTTTTGCCAAAGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGAGAAAAGTTTGCCGCTTCAACCGCt < 3:34245/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 7:400395/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 2:162792/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCACTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 8:166732/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGG‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 1:858722/140‑1 (MQ=255)
cctcGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACTACAAAATAG‑CCAGTAC‑CTAAGATGGCATCATCGGTGATCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTttaatta < 1:481549/137‑1 (MQ=255)
gATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACa < 6:207513/138‑1 (MQ=255)
atagatgcgT‑TTATTTTTTTCG‑ATTTTTCAAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATAATCGTTGTTCAAAATAGTGGTTGGCTGAAAACGATCATGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 8:110403/134‑1 (MQ=255)
aTAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 4:877909/140‑1 (MQ=255)
aTAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 1:645173/140‑1 (MQ=255)
ttATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCttttt < 7:716815/140‑1 (MQ=255)
tttttCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 1:669179/140‑1 (MQ=255)
tttttCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 3:903576/140‑1 (MQ=255)
ttttCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCCACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGc > 2:57859/1‑140 (MQ=255)
ttttCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGc < 1:496983/140‑1 (MQ=255)
tttCG‑ATTTTGCCAACGACAAAATAG‑CCTGTAC‑CAAAGATTGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGCTCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCa < 8:558624/140‑1 (MQ=255)
tttCG‑ATTTAGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCa < 8:405740/140‑1 (MQ=255)
ttGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 1:649815/140‑1 (MQ=255)
gCCACCGACAAACTAG‑CCAGTAG‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATGCTGCGAAAAGTTTGCCGCTTCTACCGATTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 7:625263/140‑1 (MQ=255)
gCCAACGAGAAAATAG‑CCAGTAC‑CATAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGTGCCTGCGAACAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 8:18684/140‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 6:595348/138‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 6:714501/138‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 5:82339/138‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 1:803554/140‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 3:814008/140‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 4:43066/140‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCATCGCAGACTTACGTc < 3:655064/140‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGATTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 5:181793/138‑1 (MQ=255)
gCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGGGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 7:567170/140‑1 (MQ=255)
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CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCG‑ATTTTGCCAACGACAAAATAG‑CCAGTAC‑CAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
