Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
18.2% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 18.2%
| 218.5
/ 25.7
| 133 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (10/97); new base G (24/2); total (34/99) |
| Fisher's exact test for biased strand distribution p-value = 2.13e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 136 total aligned reads displayed.
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
|
gtcgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGTAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGtt > 6:648178/1‑140 (MQ=255)
cgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGtt > 8:720879/1‑138 (MQ=255)
aaTCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGGTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCCCTTCCAGAGTCGCGGTTTTgg > 4:608643/1‑140 (MQ=255)
aGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCTGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑acg < 3:531276/140‑1 (MQ=255)
cAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTGTTTGGG‑acgaaagca > 1:840073/1‑134 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑TAGAACGAAGATAAtatac > 5:654588/1‑136 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCCGCGCCTGGTGCATGGCACCCTTAAGCGCGCCGCTGTTGTAGCCGATACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTGTTTTGT‑TAGAAACAAGAAAAtacac > 1:260438/1‑134 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑TCGAAACAAGaaaaaagcc > 1:10362/1‑133 (MQ=255)
cTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCa < 6:770614/140‑1 (MQ=255)
ggCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑AAGCACGAAGCTAATAGCCGCCTCaa > 2:734070/1‑138 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTc < 6:438393/140‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGGTTTTGT‑TAGACCGCAGATAAAGGCCGCCGCaaaaaattc > 3:141251/1‑135 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCGGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCt < 2:530753/138‑1 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTTGTGAGGGAC‑AAAATAATCGCCGCAGCaaaaacata > 2:73398/1‑133 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTc < 8:278725/138‑1 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGGTTTGGT‑AAGCAAGAAGAAAATCGCCGCATAaaaaacatg > 7:238291/1‑133 (MQ=255)
cgtgtCTGCTCACGCAGCGCCGGGTTCATGTCACCGTTCAGCGCGGCGCGGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGc < 4:682936/139‑1 (MQ=255)
aGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTcc < 7:451968/138‑1 (MQ=255)
ggcTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCt < 1:111664/136‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTc < 8:409655/138‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCCTc < 2:292593/138‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 1:648384/138‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 5:549983/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGTT‑TAGAACGAATCGAATAGCCGCCCAAAAATAATACGCGTCCAgg > 4:570317/1‑140 (MQ=255)
tgaCGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑ACGAACGAAGATAATAGCCCCCTAAAAAACTTACGCGTGCAgg > 1:171928/3‑138 (MQ=255)
aaCGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 5:219170/139‑1 (MQ=255)
aGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTATTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGt < 7:505023/138‑1 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTTGT‑TCGAACGAACATAAAAGCCCCAGAAAAATCTTAACCGTAAAGGAAAACTACCACTGCTTAGtt > 8:435451/1‑138 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTTGT‑AAGAACCAATATAAAAGCCCCAACAAAAACTTACGCGTACAGGAAACCTACCAAGGCCTCGtttt > 3:839125/1‑140 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑TCGAACGCATATAAAAGCCCCAACCAAAAATTCCCCATCCACGAAAAGAAACAGTGGTTCggt > 7:571103/1‑136 (MQ=255)
cggtCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:754975/137‑1 (MQ=255)
cggtCAGCGCGGCGCTGTTGTAGCCGTAACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 1:63794/135‑1 (MQ=255)
cgatCAGCGCGGCGCTGTTGTAGCCGTTACGATCACTATAGTCTGCCCCTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGTATACGTACCAGTGCTTCGTTTTTACGc < 3:635404/137‑1 (MQ=255)
cGTTCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 6:510536/140‑1 (MQ=255)
cGTTCATCGCGGCGCTGTTGTCGCCGTTACGCTCAAGAGCTTCTGCCTCTTCCAGAGTCGCGTTTGTGGT‑ACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:444175/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTCGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:6539/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCGACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATGGCCGCATCAATATCATCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 2:628960/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 7:82083/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 8:221001/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 1:365157/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 8:274002/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 2:210253/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:224292/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:685576/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:386045/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:37221/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:20681/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 6:579255/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:802658/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:6365/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:443260/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:717012/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGT‑ACGAACGAAGATAATAGCCGCATCAAAATCTTCCGCGTACAGGAAACGTACCAGTGGGTAGttttttagc > 4:74194/1‑136 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGGAGCGTTTTTGGG‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 2:407865/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTGACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:334702/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTTCCAGCTTCGCGTTTTTGGT‑ACGAACGAAGATAATCGACGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACga < 5:236419/140‑2 (MQ=255)
cGTTCAGCGCGGCGCGGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:781903/140‑1 (MQ=255)
cGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCTCTAGAGCTTCTGCCACTTGCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGGATCAAAATCTTCCGCTTCCAGGAAACGTTCCAGTGCTTCGTTTTTACGc < 6:666700/140‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATa < 2:525969/138‑1 (MQ=255)
cgcgGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGT‑TCGGAAGAAGATAATAGGCGCCTCAAAATATTACGCGTGCAGGAAAAGGTCCAGGGGTTGGGTTTTTAGCATAcccc > 3:98170/1‑140 (MQ=255)
gggggtgttgtAGCCGTTACGATGTAGTGTTTCTTAATCTTACAGTGTGTCGTTTTTGGT‑AAGAAAGAAGATAATCGCCGCATCAAAATATTACGCTTACTGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:502023/135‑1 (MQ=255)
ggcgCTTTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGA‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGATACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 2:139235/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCTAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 4:556016/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 2:310147/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 8:327951/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 2:475592/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:648178/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:385229/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTACGTTTTTACGCATACCCCAGa < 5:746041/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACCAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:79617/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGG‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 7:494954/138‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTTGG‑TCGAACGAAGATTATCGGCGCCTCCAAATCTTCCGGGTACCGGACACGGACCAGGGCGTGGGTTTTTCGCCTACCCCAGACa > 4:863133/1‑140 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:355109/138‑1 (MQ=255)
gcggttgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 6:503229/137‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 3:148207/140‑1 (MQ=255)
gtAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATATTCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGt < 5:516314/140‑1 (MQ=255)
gCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGT‑GAGAACGAAGATAATAGCCGCATCAAAATATTGCGCTTCCCGGAAACGGAACAGGGGGTGGTTTTTTCGCATACCCCCGACAGTACCGTAgg > 6:204965/1‑139 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAg < 1:548104/138‑1 (MQ=255)
cGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑ACGAACGCAGCTAATGCCCGCATCAAAATCTTCCGCGTGCAGGACACGGACCAGGGCTGGGTTTGTAAGCATCCCCCCGACCGTCCAGttgg > 2:654538/1‑135 (MQ=255)
cGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGT‑TCGAACGAAGATAATAGCCGCCTCAAAATATTCCGCTTCCCGGAAACCTCCCAGTGGGTCGTTTTTAAGCCTACCCCCGCCAGGCCAGTAGc > 2:487714/1‑138 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑TAGAACGAAAATAATAGCCGCATCAAAATATTGCGCTTACATCAAACGTAACACTGAGTAGGTTTTTCGCCTAACCCACACACTCCACTAgaaaggg > 6:842237/1‑134 (MQ=255)
tACGCTCAAGAGCTTCTGCCACATCCAGAGTCGAGTTTTTGGT‑ACGAACGAAGATAATCGCCGAATCAAAATCTTCTGCTTCCAGGAATCTTACCAGTGCTTCGTTTTTACTCATACCCCAGACAGTCCAGTAGctct < 8:763379/138‑1 (MQ=255)
aCGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGc < 5:333954/140‑1 (MQ=255)
aCGCTCAAGAGCGTCTGCCAATTCAAGAGTCGCTTTTTTTGT‑ACGAACGAAGATAAGCGCCTCATCAACATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTg < 8:475487/138‑1 (MQ=255)
cgcgCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 6:361823/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑ACGCACCAAGAAAAAACCCCCCGCAAAATCTTCCCCGTGCAAGAAACAGACCACAGCTTCGGTTTTACCCAGACACCACACACACCAGAAGcgcagg > 2:112897/1‑133 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGT‑ACGAACGAAGATAATACCCCCAAAAAAAAAATTCCAATACAGGCAAACTAAGAGTGCTGCCGTTTTAAGCAAAACCCACACAGTCCAGTAGcactcg > 2:834092/1‑136 (MQ=255)
cgagCTTCTGCCACTTCCAGAGGCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATg < 8:320170/137‑1 (MQ=255)
agagCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTc < 3:392800/140‑1 (MQ=255)
agagCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTc < 3:410334/140‑1 (MQ=255)
cTTCTGCCACTTCCAGTGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCTTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGa < 6:738780/140‑1 (MQ=255)
tGCCACTTCCAGAGTCGCGGTTTTTGT‑TAGAACGAAGATAATAGCCGCATAAAAAAATTCAGCTTCCAGGAAAAGTAACAGTTCTTGGTTTTTTAGCATACCCCACACACTACAGTAGCTCTGGCGGTTGTGAGGAcc > 2:563022/1‑137 (MQ=255)
cACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAATATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 1:121280/138‑1 (MQ=255)
cACTTCCAGAGTCGCGTTTGTGGT‑ACGAACGAACATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGCCAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 6:716825/140‑1 (MQ=255)
cACTTCAAGAGTCGCGTTTTTGGT‑ATGAACGAAGATATTCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCTGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 1:882559/138‑1 (MQ=255)
ccAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 5:414853/140‑1 (MQ=255)
cgTTTTTGGT‑AAGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGa < 5:823839/140‑1 (MQ=255)
gTTTTTGGT‑ACGAACGAATATAATCGCCGCATCAAAATCTTCCGATTACAGGAAACGTACCAGTGCTTCTTTTTAAATCATTCCACAGACAGTCCTGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTg < 7:774017/138‑1 (MQ=255)
gTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTg < 8:419608/138‑1 (MQ=255)
gTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTg < 2:499636/138‑1 (MQ=255)
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GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGT‑ACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
