Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
13.9% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 13.9%
| 315.8
/ 11.6
| 171 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (13/130); new base G (21/7); total (34/137) |
| Fisher's exact test for biased strand distribution p-value = 1.40e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 173 total aligned reads displayed.
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTG > NZ_CP022686/2048951‑2049225
|
gtcgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtt > 2:572215/1‑140 (MQ=255)
cgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Ggttt > 3:443725/1‑140 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 1:492237/140‑1 (MQ=255)
gATGTCCAGACGACCATGTATCAGGCGTTCCAGTGTCTGCTCTCGCAGCGCCTGGTTCATGGCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCATAGACGC‑GGTTTTGGtgagcg > 3:119568/1‑135 (MQ=255)
cAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacg < 8:76195/132‑1 (MQ=255)
cAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacg > 7:76195/1‑132 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATcgcc > 4:859792/1‑140 (MQ=255)
gCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAAt < 4:507486/140‑1 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTCGCACGAAGATAATAGCCC‑CATCAAAAtaat > 2:404182/1‑137 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTGGGACGAAGCTAAAATCCG‑CCGCAAAATAtt > 3:933067/1‑140 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTTTTAGAACGAAGAATATAGCCG‑CCTAAAAATAtt > 4:313608/1‑140 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTGGAACGAAGATAATCGCCG‑GATCAAAAACttg > 6:859659/1‑139 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTACGCACGCAAATTATCACCC‑CCTCAAAAACtaa > 5:298728/1‑138 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGACGC‑GTGTTTTTTACTAAAGAACATAAACTCCG‑CAaaaaaaaata > 7:335154/1‑134 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCg < 6:168175/140‑1 (MQ=255)
tCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTcc < 3:625991/140‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCa < 3:135181/140‑1 (MQ=255)
gagcACGCAGCGCCTTGTGAATGTCACCGTTCAGCGCGGCTCTGTGGTAGCCGTGACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAACTCTTCCGCTTCCAgg < 2:555585/137‑1 (MQ=255)
gCTCACGCAGCGCCCGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAgg < 5:320907/140‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGGCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑aaa < 5:361745/140‑1 (MQ=255)
cGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGGAAGCACGAACATAATCGCCG‑CAACAAAATCATACGCGTACAGG‑ATAcc > 5:600800/1‑139 (MQ=255)
gcgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGGATGAAACAAGATAATAGCCG‑CACGAAAAAAATACGCGTCCACG‑aaaactaac > 5:166132/1‑134 (MQ=255)
tgtCATGGCCCCGTTCCGCGCGGCGCTGGTGTCGCCGGACCGCTCCAGCGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGc < 8:200976/136‑1 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGGTTTTGTTAGGAA‑GAAAATAATAGGCG‑CAAAAAAATCTTCCGCGTACAAG‑CAACGTACCAgagggt > 5:171217/1‑135 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTCGAACGAAGATAATCGCCG‑CATCAAAATATTACGCGTCCAGG‑AAACCTACCAGTGCtt > 4:94787/1‑140 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGc < 7:574287/138‑1 (MQ=255)
tCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGGACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGGGCGTC‑Gttttt < 6:64608/140‑1 (MQ=255)
ggTTCAGCGGGGCGCTGTTGTAGCCGTTACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAATATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 6:839176/139‑1 (MQ=255)
cggtCAGCGCGGCGCTGGTGTAGCCTTTACGCTCAAGAGCTTCTGCCTCTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 5:886355/137‑1 (MQ=255)
cGTTCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 2:248332/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTATCCGTTACGCTAAAGAGCTTCTGACACTTCCAGAGTCGC‑GGTTTTTGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCTCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTAc < 8:568347/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCCGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 6:436812/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTCCGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 3:886786/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTAc < 8:590056/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTAc < 8:860070/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTAc < 8:319777/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTAc < 8:262096/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTAc < 8:250722/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 4:443725/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 1:14623/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 1:572215/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 1:783079/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 1:922190/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 6:671451/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 2:624348/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 3:377620/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 3:782512/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 3:793102/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 4:370004/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 4:746208/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAAGCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTAc < 8:765339/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTAGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 5:679530/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACATCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 3:161144/140‑1 (MQ=255)
cGTTCAGCGCGGAGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGAAAATCGACG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGc < 2:292123/140‑1 (MQ=255)
cAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTAAGCCCGAAGCTAATAGCAG‑CCACAAAATCTTCCGCGTCAAGG‑CAAAGGACCCGTTCTTC‑GTTTTTTCGCATAc > 2:514831/1‑140 (MQ=255)
cgcgcGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATAcc < 1:148943/139‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATAcc < 6:480038/140‑1 (MQ=255)
cgcgGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGGTA‑GAACGAAGATAAAAGCCG‑CCTAAAAAACTTACGCGTGCACG‑AAAACGACCAGTGGGTA‑GTTTTTTAGCATAaccc > 3:596807/1‑140 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACTAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 8:624258/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 8:456278/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 8:805923/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 4:785312/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 3:355954/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTCGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 2:606993/140‑1 (MQ=255)
ggcgCTGTTGTAGCAGTTACGCTCAATTGCTTCTTCCACTTCGAGAGTCGC‑GTTTTTGGGACGAACGAAGATAATCGCCT‑CATCTAAATCTTACGATTCGAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATAcccga < 8:563696/138‑3 (MQ=255)
ggcgCTGTTGTAGACGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTCCCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 6:822238/140‑1 (MQ=255)
ggcgCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGTGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 7:148562/138‑1 (MQ=255)
ggcgCGGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 2:768552/140‑1 (MQ=255)
gcgcTGTTGTAGCCGTTACGCACAAGAGCTTCTGCCACTTCCAGAGTCTC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑ATACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAg < 7:199355/138‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAAGAACGAAGATAATCGCCGCCAGCAAAA‑CTTCCGCGGCCCGGAAAACGT‑CCACTGCGTA‑GTGTTTAAGCAGACCCCacacc > 4:797495/1‑139 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGA‑GGTTTTTGTTCGAAAGAAGAAAAAATCCG‑CCTCAAAATATTCCCCTTACCAG‑AACAGGACCAATGCGTG‑GTGTTTAAGCAAACCCCaagaa > 2:624991/1‑136 (MQ=255)
gttgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTcc < 1:788005/140‑1 (MQ=255)
ttgtAGCCGTTACGCTCCAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCACG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCa < 6:210170/140‑1 (MQ=255)
ttgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCa < 1:282128/140‑1 (MQ=255)
ccGTTACGCTCACGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGACGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAg < 8:69080/138‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCCGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGct < 2:200618/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGct < 1:547447/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCTTACCCCAGACAGTCCAGTAGct < 1:533137/140‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTCGCACGGAGATAATCGCCG‑CATGCAACAAATACGCTTGCAGG‑TAACGGAACAGTGCGTC‑GGTTTTAAGCAGACCCCACACAGTACAGTAGCGCTgg > 4:52318/1‑140 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACCAAGATAAAAGCCG‑CATAAAAAAATTACGCGTCCAGG‑AAACGTACCAATGCTTC‑GGTTTTAACCAAACCCCACACCGTGCAGTAGcaagtg > 4:699432/1‑135 (MQ=255)
cGCTCTAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGGACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTgg < 8:157949/138‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTgg < 7:36850/138‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 5:540757/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 6:367472/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 5:669038/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGAACCAATATAATATCCG‑CAACAAATTAATACGCATACAGG‑ATCACTAACAGTGCTTCTGTGTTTA‑GGATACACCAGACAGTCCATTAGGTCTgg > 8:49393/1‑138 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGGACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 2:888148/140‑1 (MQ=255)
cGCTCAAGAGCATCTGCCACTTACAGAGTCGC‑GTTTTTGGTTCGAACGAAGATAATCGCCG‑CAGCAAAATCTTACGCTTCCCGG‑ACACGTAACAGTGCTTC‑GGTTTTACGCATACCCCAGCCAGTCCAGTATCTCTgg < 7:429537/138‑1 (MQ=255)
tGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACggg < 3:637085/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 6:26601/140‑1 (MQ=255)
aaCTTCCAGAGTCGC‑GTTTTTGTTCCGAACGAAGATAATCGCCG‑CATCAAAAGCTTCCGCTTCCAGG‑AAACTTACCAGTGCTTC‑GTTTTTACGCATACACCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 5:809716/139‑1 (MQ=255)
aCTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTa < 7:103196/138‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCa < 7:697011/138‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCa < 7:481847/138‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 4:407715/140‑1 (MQ=255)
cAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGc < 4:142367/140‑1 (MQ=255)
tCGC‑GTTTTTGGTAAGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 7:656679/138‑1 (MQ=255)
tCGC‑GGTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 7:831749/138‑1 (MQ=255)
gcgc‑gTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 6:793744/139‑1 (MQ=255)
gTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTg < 7:465199/138‑1 (MQ=255)
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GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCG‑CATCAAAATCTTCCGCTTCCAGG‑AAACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTG > NZ_CP022686/2048951‑2049225
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
