Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
17.4% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 17.4%
| 361.6
/ 32.4
| 202 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (19/144); new base G (36/3); total (55/147) |
| Fisher's exact test for biased strand distribution p-value = 1.88e-22 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 205 total aligned reads displayed.
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
|
gtcgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtt > 1:791202/1‑140 (MQ=255)
gtcgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCT‑GTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Ggtt > 7:224185/1‑140 (MQ=255)
cgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtgtt > 2:218367/1‑140 (MQ=255)
tctggATGTCCAGACGACCATCTTGCAGGCGTTCCTGTGTCTGCTCACGGATGGCCTGGTTCATGTCACCGTTGAGCGCGGCGCTGTTGTAGCCGTTACGCTGAAGAGCTTCTGCCAGTTCCAGAGTCGC‑GTTTTTgg < 6:972375/135‑1 (MQ=255)
tCAGGATGTCCAGCAGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCTCTGCGCTGTTGTAGCAGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 3:801352/140‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCGAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTGCAGCGCGGCGCTGGTGTAGCCGTTTCGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 8:582071/140‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTgg < 5:387879/138‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 7:969845/140‑1 (MQ=255)
gATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaa < 1:579395/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaacg < 1:944262/140‑1 (MQ=255)
tCCAGACGCCCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTcggacgaa > 2:962368/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTacgaaccca > 3:859470/1‑137 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGTTAcgaacgaa > 3:849701/1‑140 (MQ=255)
aGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCaaa < 3:244209/140‑1 (MQ=255)
gCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGA‑GTTGTTGGTGAGACAGCAGATAATAGCCGCagacaaaa > 4:466328/1‑133 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCATAGTCGC‑GTTTTTTGTTCGAACGACTATAATCGACGCATCAAAAtaat > 4:32206/1‑137 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTGGCACGAAGATAATGTGCGCAGCaaaaaaat > 3:361156/1‑136 (MQ=255)
tCCAGTGTCTGCTCTCGCAGCGCCTGGTTCATGTCACCGTTCTGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGTGTGGC‑GTTTTTGGTACGAACGAAGATAATCGCCTCATCAATATCt < 6:258152/138‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 1:721606/140‑1 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCAGCCACTTCCAGAGTCGCGGGTTTTTGTA‑GAAACCAGATAATCGCCCCCACaaaaaatt > 5:178841/1‑134 (MQ=255)
tcttctCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCTTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCtt < 5:310029/138‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 1:460750/140‑1 (MQ=255)
cTGCTCACGCAGCGCATGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTc < 6:958101/138‑1 (MQ=255)
tGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTGTTCGGACGAAGAAAATAGCCGCAACAAAATATTACGcgtacac > 3:281764/1‑134 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 4:497885/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 7:669004/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTACGCACGCAGATAATCGCCGCAACAAAATATTACGCTTCCAgg > 4:1002374/1‑140 (MQ=255)
cTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGTACCGAGATAATCGCCGCCTGAAAAAGTTACGCGTCCAg > 6:841576/1‑138 (MQ=255)
tCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 5:522146/138‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 8:471185/140‑1 (MQ=255)
cACGCAGAGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGGTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCATGaaa < 8:851559/140‑1 (MQ=255)
cGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGGTTTTGGTA‑GAACGCAGATAATAGCCGCAGCAAAATCTTACGCGTACAGGAAAcc > 4:288573/1‑139 (MQ=255)
gCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTGTTAGACAGAAAATAAAAGCCGCCTAAAAAAATTGAGCATACAGGAAAccc > 7:724960/1‑138 (MQ=255)
gcgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGCACGCAGATAATCGACGAATCAAAATAATCAGCATCCAGGaacacgaca > 7:690865/1‑133 (MQ=255)
ccTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTTTGAGTACAAATATAATAGCCACCTCAAAAACATACCCATCCACGAAAC‑CTaaaaat > 3:738887/1‑135 (MQ=255)
ggTTCATGTCACCGTTCAGCGCGGCTGTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTg < 6:553157/138‑1 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTAGCAAACAAGTGAATAGCCGCATAAAAATCTACAGCATCCCGCTAAA‑GTAACACTGCTACGtt > 6:773634/1‑138 (MQ=255)
tCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGttttt < 4:849701/140‑1 (MQ=255)
tCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGttt < 5:674340/138‑1 (MQ=255)
aCCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAAGAACCAAGATAATAGCCGCAACAAAAAATTACGCTTCCAGGAAAA‑GTACCACTGAGTAGTTTTTaa > 8:116029/1‑139 (MQ=255)
cgatCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:134226/137‑1 (MQ=255)
cGTTGAGCGCGGCGCTGTTGTAGCCGTTACGCTCTAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:522010/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTTTAGCCGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACTAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 1:648088/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACTCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 6:984007/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:710722/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 2:1106791/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:176775/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:331180/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 2:576212/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 2:653547/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 2:791202/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 8:315219/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 1:353154/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCGCAAGAGCGTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTAGGAGTGCTTCGATTTTAc < 5:862200/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 6:881608/138‑1 (MQ=255)
cGTTCAGAGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCAACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGATACTCGCCGCATCAAACTCTTCCGCTTCCATGAAAC‑GTACCAGTGCTTCGTTTTTaaga < 2:619557/140‑4 (MQ=255)
cGTGCAGCGCGGCGCTGTTGTATCAGTTACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 1:1042819/140‑1 (MQ=255)
ttCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGACGAACCAAGATAAAAGCCCCAACAAAATATTCCGCTTCCACGAAAC‑CGACCAGTGGTTAGTGTTTTCgg > 6:338796/1‑137 (MQ=255)
cgcgGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGGACGCACGAAGATTATAGCCGCCTCAAAATCTTGCGGGTCCCTGGAAC‑GTACCAGTGCGTGGTTTTTAAGCCTAcacc > 7:736927/1‑140 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 3:520479/140‑1 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 4:940691/140‑1 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGAATACCCCa < 4:555616/140‑1 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTGTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 1:309149/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCTGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:325626/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGG‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCATGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:191764/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 6:45487/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCTCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:407227/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACGCCa < 5:284404/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 5:958540/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 5:321090/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:1064700/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 8:224185/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:858571/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:642897/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:407225/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGA‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 5:734326/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGACACTTCCAGATTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 8:642401/140‑1 (MQ=255)
ggagatgttgtCTCCGTTACGCGAACGATCTTCTGCCACTTCCAGAGTCTC‑GTTTTTGGTACGAAAGAAGATACTCGACGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACACCa < 6:1041198/133‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTAAAGCGTTTCTTCCACTTCCAGAGTCGA‑GTTTTTGGTACGAACGAAGTTAATCGCCGAATCAAAATCTTCCGCTTCCAGGATAC‑GTAACAGTGCTTCGTTTTTACGCATACCCCAGACAg < 7:841022/140‑1 (MQ=255)
gcTGTTGTAGCAGTTTCGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACTATCGTAGATAATCGCCGCTTCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTAGTTTTTACGCATACCCCAGACAg < 1:998741/140‑1 (MQ=255)
ttgtAGCTGTTTCGGTCAAGATGTTCTGCTAATTCCAGATTCGG‑GTTTTTTGTACGAACGAAGATAATCGCCGCTTCAATTTCTTCCGCTTTAATGAAAC‑GTTCCTGTGCTTCGTTTTTACGCATACCCCAGagattgca < 2:17805/140‑8 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 3:1026705/140‑1 (MQ=255)
gtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGt < 7:10995/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 4:539216/140‑1 (MQ=255)
ccGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACTAACGAAGATAATCGCCGCATCAAAATATTCCGCTTCAAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 3:172627/140‑1 (MQ=255)
ccGGTACGCTCAAGCGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCATCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAg < 6:138988/138‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACCCAGATAAAAGCCCCATCAAAATGTTCCCCGTCCACGCAAC‑GGACCACTGCTTAGTTTTTAAGCCTAACCCAGACAAGCACTTAGCTCTgg > 4:611258/1‑140 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACGAACGAAGCAAATCGCCGCCTCAAAATCTTCCGCGTCCAGGCAAC‑CTACCAGGGCTTCGTTTTTACGCATACCCCAGACAGTCCGATAGCTGTgg > 6:430602/1‑138 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 3:576594/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTAGAAGGAAGATAATCGACGCATAAAAATCGTCCGCGTGCAGGAAAC‑GGACCAGGGCTTCGTTTTTACGCAGACCCCAGACCGTCCAGGAgggaggg > 6:537414/1‑132 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGGACGCAGATTATCGCCGCCTCAAAATGTTGCGCGGGCAGGGAAC‑GGCCCAGTGCTTGGGTTTTTCGCATACCCCACCCAGTGCACGAGCTGTgg > 6:350854/1‑138 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 7:778543/140‑1 (MQ=255)
cGCTCAAGAGCATCTGCCACTTCCAGAGTCGC‑GTTTGTGGTACGAACCAAGATACTCTCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTCCCAGTGCTTCGTTTTTACGCATCCCCCAGACAGTCCAGTAGCTCTGGCt < 4:573628/140‑1 (MQ=255)
gCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTGGGACGAAGATAATAGCCGCATCAAAATCTTACGCTTCCAGGGAAC‑GGACCAGGGGGTCGGTTTTAAGCATACCCCCGACAGTCCAGAAGCTCTgggcg > 4:10664/1‑137 (MQ=255)
aaGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACGAAAGAAGATAATATCCGCATAAAAAAATAGCGCATACCGGCAACGGTACAGGTGGTT‑GTTGTTACGCATACCCCAGACAGTCCAGGAAGTCTGGGTgcggg > 2:267006/1‑136 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGCACGCAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCa < 6:751115/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGATCGAAGATAATCGCCGCATCAAAATCTTCCGTTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATTCCCCAGACAGTCCAGTAGCTCTGGCTGATGTAAGGACGGTTAg < 4:967027/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 1:955326/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 3:1064055/140‑1 (MQ=255)
gcgc‑gTTTTTTGTACGAACTAAGATAATCGCCGAATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAAGAATACCCCAGACAGTCCAGTCGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 4:698715/139‑1 (MQ=255)
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GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
