Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,317,667 |
A→T |
15.6% |
intergenic (+85/+34) |
lptG → / ← yjgR |
LPS export ABC transporter permease LptG/DUF853 domain‑containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,317,667 | 0 | A | T | 15.6%
| 308.7
/ 11.1
| 160 | intergenic (+85/+34) | lptG/yjgR | LPS export ABC transporter permease LptG/DUF853 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (77/49); new base T (2/27); total (82/78) |
| Fisher's exact test for biased strand distribution p-value = 4.66e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 168 total aligned reads displayed.
GCCAAGCGCCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGCACCACACCATCTTTC > NZ_CP022686/3317528‑3317806
|
gCCAAGCGCCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGgaga > 1:994270/1‑140 (MQ=255)
cgcgcCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTACCCACGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAgg < 4:994680/137‑1 (MQ=255)
aGCGCCTGCTTATTCTTAATCAGCCTGTGTCTGTTAATGATAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGt < 5:899423/140‑1 (MQ=255)
aGCGCCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGt < 1:857542/140‑1 (MQ=255)
gcgcCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACTTTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGtt < 6:310807/140‑1 (MQ=255)
gcgcCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAggg < 3:760025/138‑1 (MQ=255)
cgcCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAggggtt > 6:235359/1‑137 (MQ=255)
cgcCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 4:298767/1‑138 (MQ=255)
cgcCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTa > 1:24414/1‑140 (MQ=255)
cgcCAGCTTCTTCTTAATCAGCCGGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTa > 7:823187/1‑140 (MQ=255)
ccAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTTGGGAGAGGGTTAgg > 1:119806/1‑140 (MQ=255)
ccAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGCGGGTTAgg > 2:586328/1‑140 (MQ=255)
ccAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:65721/1‑140 (MQ=255)
ccAGCTTCTTCTTAATAAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCACTTTCACATTGTTGATATAGTCATATAGGAGTTCGATCGTTCCCCTCGCCCGTGTGGGGAGAGGGTTAgg > 1:946636/1‑140 (MQ=255)
ttcttcttAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAg < 2:730160/140‑1 (MQ=255)
attAATCAGCCTTTGGCTGTTAATCTTAAAATCTTAACCAACCAAGGGAGCCAAACCACCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGTTGTGGGTTTGGGTGAGGGGGa < 5:566651/139‑1 (MQ=255)
attAATCAGCCTGGGGGTTTAAATGATAAAATCGTAACCAAGCATGGGAGCGAAAGCTCCCTTTCAAATTGTTTATAAAGTAAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGa < 1:721707/139‑1 (MQ=38)
aTCAGCCTGGGGCTGTTAATGAGAAAATCGTAACCACGCACGGGAGCGAAAGCTCCCTTTCACATTGTTGAGAAAGACAAATACGAGTACGATCGGTCCCCTCGCCCCGGTGGGGAGCGTGTGAGGGTGAGGGGGACAGa > 8:844048/1‑140 (MQ=255)
cAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGa > 4:354189/1‑138 (MQ=255)
gCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATcgc > 2:279304/1‑140 (MQ=255)
ccTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGGTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCTATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATcgcg > 7:708252/1‑140 (MQ=255)
ccTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAATTACGAGTTCGATCGGTCCACTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATcgcg > 8:920189/1‑140 (MQ=255)
ccTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGCGGACAGATagcg > 6:46514/1‑140 (MQ=255)
tgtgGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATcgcg > 3:262168/1‑138 (MQ=255)
tGTTAATGAGAAAATCGAAACCACGCAAGGGCGCTACAGCTCCCTTTCAAATTGTTTAAAAAGTCAAAAACGAGTTCGAGCGGGCCCCTCGCCCCTTTGGGTAGTGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACtt < 8:711253/140‑1 (MQ=255)
ttttattagaAAATCGTAACCAACCTAGGTAGCTAATGCGCCCTTTCACATTTTTTATAATGTAAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTTGGGTGAGGGGGACAGATCGCGCCTGACTTa < 8:370359/133‑1 (MQ=255)
ttAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTAc > 8:743281/1‑140 (MQ=255)
ttAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTAc > 2:946912/1‑140 (MQ=255)
ttAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCACCTCGCCCCTTTGGGGAGAGGGTTAGCGTGAGGGGGACAGATCGCGCCttcattac > 8:650686/1‑133 (MQ=255)
aaTGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTAc > 3:481223/1‑138 (MQ=255)
tGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACcttc > 1:971393/1‑140 (MQ=255)
aaTCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGTGAGAGGGTTACGGTGAGGGGGACAGATCGCGGCGGACTTACCTTCTTctcc > 1:164136/1‑140 (MQ=255)
tCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTctcc > 4:382897/1‑138 (MQ=255)
tCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATAGCGCCTGCCTTACCTTCTTctcc > 3:115414/1‑138 (MQ=255)
aCCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCtccctccc > 3:374431/1‑138 (MQ=255)
aCCAAGCAAGGGAGCGAAAGCTCCCATTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTAGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCac > 7:775108/1‑139 (MQ=255)
ccAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCtccctcccc > 4:151001/1‑137 (MQ=255)
ctcgcaagGCAGCGAAAGCGACCTTTCACAGTGCTTAAAAAGTCAAAGACGAGTCCGCTCGGTCCCCTCGCCCCTTTGGGGCGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAg < 3:448925/135‑1 (MQ=255)
agcaagGGTGGGAAAGCTCCCTTTCAAATTGTTGATAAAGTAAAATACGAGTTCGTGCGGGCCCCTCGCCCCTTTGGGGTGTGGGTTTGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCaaa < 6:898451/140‑1 (MQ=255)
agcaagGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAAGGTGAGGGGGACAGATCGCGCCTGAc > 6:1051017/1‑115 (MQ=255)
gcaagGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTGAGGGTGAGGGGGCCAGATCGCGCCTGACTTACCTTCTTCTCACTCCCAGCAAAc > 1:939025/1‑140 (MQ=255)
ccGAAAGCTCCATTTCACATTGTTTATAAAGTCAAATACGTGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGTGGGTTTGGGTGTGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAATCTCCCCAAc < 7:269352/139‑1 (MQ=255)
gAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGt < 8:670297/75‑1 (MQ=255)
aaGCTCCGTTTCTCATTTTTTATAATGTATAATACGAGTTCGTTGGGTCCCCTCGCCCCTTTGGGGTTAGGGTTAGGGTGTGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATcc < 5:337663/140‑1 (MQ=255)
tcacTTTCAAATTGTTTATAAAGTCAAATACGAGTTCTATCTGGCCCCTCGCCCCTTTGGGGATTGTGTTTGGGTTAGGGGGACAGATCGCGCCTGAATTACCTTCTTCTCCCTCACAGCAAACTCCCCAACATCCcgag < 2:793626/137‑3 (MQ=255)
tCCCTTTCACATTGTTTATAAAGTCAAATACGCGTGCGATCGGCCCCCTCGCCCCTTTGGGGAGTGGGTTAGGGTGCGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCcgcg < 1:1126323/140‑1 (MQ=255)
cgccTTTCACTTTGTTTATAAAGTAAAATACGTGTGGGATCGGTCCCCCCGCCCGTTGGGGGAGTGGGTTGGGTGGCGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCcgcg < 6:209054/138‑1 (MQ=255)
cccTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACATTCTTCTCCCTCCCAGCAAACTCCCAAACATCCCGCGt > 7:54671/1‑140 (MQ=255)
tttttgATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTTGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGAt < 7:964468/137‑1 (MQ=255)
tgttgATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGAtt > 7:125068/1‑140 (MQ=255)
tgttgATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGAtt > 1:413495/1‑140 (MQ=255)
tgttgATAAAGTCAAATACGAGTTCGATCGGACCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACATACCTTCTTGTCACTCCCAGCAAACTCCCCAACATCCCGCGTACAATCAGAtt > 6:780629/1‑140 (MQ=39)
gATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTGCCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGta > 6:497385/1‑139 (MQ=255)
cAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCg > 6:776845/1‑140 (MQ=255)
accGAGTTAGTTGGGTCCCCTCGCCCATTTGGGGAGTGGGTTTGGGGGCGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAgcg < 7:431724/138‑1 (MQ=255)
aCGAGTGCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAgcgg < 5:1000652/140‑1 (MQ=255)
gTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCCGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGCGCGGCGCt > 1:1043622/1‑140 (MQ=255)
gTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTACCCAACATCCCGCGTACAATATGATTCGTCACCTGGCGAGCGgcgca > 1:492886/1‑139 (MQ=255)
gTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTGACCTTCTTCTCCCTCCCAGCAAACTCCCCAACAGCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGgcgcg > 6:846241/1‑139 (MQ=255)
gcggtgggTCCCATCGCCCCTTTGGGGTGAGGTTTAGTGGGCGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCttt < 1:1096001/134‑1 (MQ=255)
tCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGCCTGATCGCGCCTGACTTCCCTTCGTCTCCCTCCCCGCAAACTCCCCACCAGCCCGCGTACAATCTGATTCGTCACCTGGCGCGCGGCGCGGTTGGc > 7:169579/1‑140 (MQ=37)
tCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTggg > 1:1036954/1‑139 (MQ=255)
gggaccccTCGCCCGTTTGGGGAGAGGGTTAGGGTGTGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGcc < 5:453436/136‑1 (MQ=255)
gggTCCCCTGGCCCCTTTGGGGAGTGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGcc < 8:472930/139‑1 (MQ=255)
gggTCCCCTCGCCCCTTTGGGGTGAGGGTTTGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGcc < 8:752555/139‑1 (MQ=255)
cGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGcc < 2:1071885/140‑1 (MQ=255)
cGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCCCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTgg > 3:1051356/1‑138 (MQ=255)
cGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGGGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGcc < 6:430420/140‑1 (MQ=255)
cGGGCCCCTCGCCCCTTTGGGGAGTGGGTTGGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCAAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCTAGCGGCTCTTTTGGcc < 6:995562/140‑1 (MQ=255)
cGGGCCCCGCGCCCCTTTGGGGTGAGGGTTAGGGTGCGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGcc < 2:1114389/140‑1 (MQ=255)
cGGCCCCCTCGCCCCTTTGGGGTGAGGGTTAGGGGGCGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGcc < 1:728752/140‑1 (MQ=255)
gggccccTCGCCCCTTTGGTGAGAGGGTTAGGGGGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCa < 6:488001/137‑1 (MQ=255)
ggaccccGCGCCCCTGGGGGGAGTGGTTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCa < 6:136020/137‑1 (MQ=255)
ggTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCa < 2:448851/140‑1 (MQ=255)
ggTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCa < 8:430483/140‑1 (MQ=255)
ggTCACCTCGCCCTTTTGGGGTGTGGTTTTGGGGCTGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCa < 2:173141/140‑1 (MQ=255)
cccTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGt > 7:297105/1‑140 (MQ=255)
cccGCGCCCCTTTGGGGAGAGGGTTAGGGGGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCAtt < 3:713854/138‑1 (MQ=255)
cTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCTCCATCCCGCGGTCAATCTGATTCGTCACCTGGCGAGCGGCGCTGTTGGCGATTGTCt > 6:57453/1‑140 (MQ=255)
gcGCCCCTTTGGGGAGTGGGTTTGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTg < 5:230255/139‑1 (MQ=255)
cGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCCACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGc > 1:349771/1‑140 (MQ=255)
gCCCCTTTGGGGAGAGGGTTAGGGTGTGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGGACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTCGGCCATTGTCTGca < 2:718606/140‑1 (MQ=255)
cccTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGACTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTTGCCATTGTCTGcacc > 8:393837/1‑140 (MQ=255)
cgtttGGGGTGAGGGTTAGTGGGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCATCAAACTCCACAACATCCCTCGTACACTCTGATTCGTCACCTGGCGAGCGGAGCTTTTGGCCATTGTCTGcacca < 6:384923/138‑1 (MQ=255)
ccTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACCATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGcaccc > 5:817725/1‑139 (MQ=255)
ccTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCGTTTGGGCATTGTCTGcaccc > 7:551596/1‑139 (MQ=255)
tttGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAATCTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCAGTGTCTGcacca > 4:976554/1‑138 (MQ=255)
ttGGGGAGGGGGTTCGGGGGAGTGGGACAGAGCGCGCCTGACTTCCCTCCTTCTCCCTCCCAGCAAACTCCCCACCATCCCGCGTACAATCTGATGCGTCCCCTGGCGAGCGGCGCTTTTGGCCATTGGCTTcaccacac < 8:194796/140‑1 (MQ=255)
ttGGGGAGAGGGTTCGGGCGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGcaccacac < 1:1061608/140‑1 (MQ=255)
ttGGGGAGAGGGTTAGGGTTAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGcaccacac < 6:288037/140‑1 (MQ=255)
tGGGGAGTGGGTTAGGGGGCGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCACCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGcaccaca < 3:918059/138‑1 (MQ=255)
gggAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGcaccacacc > 4:1052536/1‑138 (MQ=255)
gggAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCACTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGcaccacacc > 4:242763/1‑138 (MQ=255)
ggAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGCACCACACCAtc < 6:33372/140‑1 (MQ=255)
agagGGTTAGCGTGAGGGGGACAGATCGCGCCTGCCTAACCTACTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGCCGCTTTTGGCCATTGTCTGCACCCCACCAtctt > 2:117819/1‑140 (MQ=255)
gagGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGCACAACACCAtcttt > 1:883316/1‑140 (MQ=255)
agGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCCGCACACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGTGAGCGGCGCTTTTGGCCATTGTCTGCACCACACCAtcgtta > 2:748976/1‑139 (MQ=255)
agGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTTGCCATTGTCTGCCCCACACCAtctttc > 7:995896/1‑140 (MQ=255)
agGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGCCCCACACAAtctttc > 2:382257/1‑140 (MQ=255)
agGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGCACCACCCCAtctttg > 2:382254/1‑139 (MQ=255)
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GCCAAGCGCCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCAAGCAAGGGAGCGAAAGCTCCCTTTCACATTGTTGATAAAGTCAAATACGAGTTCGATCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGGACAGATCGCGCCTGACTTACCTTCTTCTCCCTCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACCTGGCGAGCGGCGCTTTTGGCCATTGTCTGCACCACACCATCTTTC > NZ_CP022686/3317528‑3317806
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
