Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,783,334 |
A→C |
15.9% |
V32G (GTC→GGC) |
mnmA ← |
tRNA 2‑thiouridine(34) synthase MnmA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,783,334 | 0 | A | C | 15.9%
| 187.0
/ 6.3
| 137 | V32G (GTC→GGC) | mnmA | tRNA 2‑thiouridine(34) synthase MnmA |
| Reads supporting (aligned to +/- strand): ref base A (70/40); new base C (22/3); total (94/43) |
| Fisher's exact test for biased strand distribution p-value = 1.82e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 140 total aligned reads displayed.
TACTCGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGGCGGCGTATTCTA > NZ_CP022686/4783196‑4783469
|
tACTCGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAAAAGGCCGTCGAc > 1:983869/1‑140 (MQ=255)
aCTCGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGa < 4:230958/138‑1 (MQ=255)
aCTCGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGa < 4:856947/138‑1 (MQ=255)
cTCGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGGTCATCATAAACAGGCCGTCGcccg > 7:546226/1‑139 (MQ=255)
cGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATCTTCCTCACCGTCGTCTTCGTACCAGTTCTTCAATAACAGGCCTTCGTCCTgg > 1:166198/1‑139 (MQ=255)
cGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTGCCAGTTCTTCATAAACACGCCGTCGACCGGa > 7:1045769/1‑140 (MQ=255)
cGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTCTTCCCAGTTCGTCATAAACAGGCCTTCGCCCGGa > 7:514601/1‑140 (MQ=255)
ggCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTGGTGGTCCCACTTCTTCATAAACAAGCCTGCGCCCTGaa > 1:201763/1‑139 (MQ=255)
ggCAGCAAAGTTAACGGTGTGCAGTTCAAAGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGCTCCGCTGCCGCTGAGCAATATTCCTCCCCGTCGTCTTGTTCCCTGGTCTTCATAAACAAGCCGTAGAccagct > 6:478132/1‑136 (MQ=255)
gcagcaAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGa > 4:559099/1‑138 (MQ=255)
gcagcaAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTATTCATAAACAGGCCTTCGACCTGa > 4:559096/1‑138 (MQ=255)
gcaAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGGTCTTCATAAACAGGCCTTCGCCCTGatat > 4:608561/1‑138 (MQ=255)
aaGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATccc > 3:1046565/1‑138 (MQ=255)
gtgtGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCaa < 2:87715/140‑1 (MQ=255)
gtgCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAAAAGGCCTTAGACCTGATATCCCTGTTGTT‑GCAACa > 5:1005479/1‑140 (MQ=255)
gtgCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTATCCAGTTGTTAAAAAACAGCCCTTAGACCAGAAATACCAGTTGTT‑TCaaaa > 5:590239/1‑138 (MQ=255)
tgCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTGTTGTTCCCAGGTCTTAAAAAACACGCCTGAGCCCATATAACCCCGTTGTT‑TGAACAg > 5:73627/1‑140 (MQ=255)
tgCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCGTCGCCCTGATATCCCAGTTGTT‑GCAACAg > 2:618965/1‑140 (MQ=255)
tgCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTATTCATAAAAATGCATTAGCCCAGATATCACTGTTGTT‑TCAAccg > 7:805921/1‑138 (MQ=255)
tgCAGTTCAATGCCAAGCTTGACGCAGACAGCCTGGGCAACAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGATCTTCATAAAAAGGACTACGCCCTGCTATACCTGTAGTT‑GGAACac > 1:74635/1‑139 (MQ=255)
gCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGc < 7:590485/140‑1 (MQ=255)
gCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCACAGTTCTTCATAAAAAGGCCTTCGACCTGATATCCCTGTTGTT‑GCaaac > 4:778669/1‑136 (MQ=255)
gCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTATGCCCAGTTAGTGTTAAACAGGCCGGGGACGTCATATACCTTTTTTT‑GCaagcgg > 5:175574/1‑136 (MQ=255)
cAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAAccg > 3:85429/1‑136 (MQ=255)
cAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAg > 3:495663/1‑138 (MQ=255)
ttCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTTTTCATAAACAGGCCTTCGCCCTGATATCCCTGTTGTT‑GCAACAGCCAgg > 2:921477/1‑140 (MQ=255)
aaTGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCGGATATCCCTGTTGTT‑GCAACAGCCAGGCAg > 7:616977/1‑140 (MQ=255)
aaTGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTCTTACCCGTTATTCATAAACAGCGCGTCGCCCTGATATACCTGGTGTT‑GCAACAGCCAGGCAg > 1:623454/1‑140 (MQ=255)
tGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCATATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCAGATTGCCAGGTCTTAATAAAAAGGACTGAGAACTGTTATCCCTTTTGTT‑GGAACAGCCAGGCACaa > 5:414597/1‑140 (MQ=255)
tGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGCCCTGATATCCCGGTTGTT‑GCAACAGCCAGGCAGaa > 7:865949/1‑140 (MQ=255)
tGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTACCAGTTCTTAATAAACAGGCCTTAGACCTGATATCCCTGTTGTT‑GCAACAGCCCGGCAGaa > 7:376514/1‑140 (MQ=255)
tGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTCTTGCCAGGTCTTCATAAACAGGCCTTAGCACTGATATCCCTGTTGTT‑GCCAAAGCCAggatgaa > 6:751653/1‑135 (MQ=255)
gCCAAGCTTGGCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGaaa < 1:125927/140‑1 (MQ=255)
ccAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTCTTCCCAGTTGTTAATAAACAGGCCTTCGAACTGATATACCTGTTGTT‑GCAACACCCAGGCAGaa > 3:139108/1‑138 (MQ=255)
cAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATATACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGaaa < 4:104750/138‑1 (MQ=255)
atctgttCGCAGACAGACTGGGCATCAGCCAGATCCGCTGCCGCTGTGAAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACGTGATATCCCTTTTTTT‑GCAAGAGCCAGGCAGAAACgga < 7:925472/134‑1 (MQ=255)
aGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCGTCCCAGTTCTTCATAAACAGGCCGTCGACCTGATATCCCTGTTGTT‑GCAACCGCCAGGCAGAAACgga > 6:717459/1‑140 (MQ=255)
aGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATACGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGGCTTAGCCCTGAAATCCCAGTTGTT‑GCAACAGCCAGGCCGAACCg > 3:903939/1‑138 (MQ=255)
aGCTTGTCGCAGACAGCCTGGGCATCAGACAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTATTCCCAGTTCTTCATAAACAGGCCTGCGACCTGATATACCTGTTTTT‑GCAACAGCCAGGCAGAAACtga > 8:683861/1‑140 (MQ=255)
cTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGGTCTTCATAAACAGGGCTTCGACCGGATATCCCTCGTGGT‑GCACCAGCCAGGCAGAAACgga > 3:266291/1‑138 (MQ=255)
cTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCGTCCCAGTTATTCATAAACAGGCCTTCGACCTGATAGACCAGTTGTT‑GCCACAGCCAGGCAGAAACggc > 3:783553/1‑137 (MQ=255)
cTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGGCTTCTTGCCAGTTCTTCTAAAACAGGGCTTCGACCGGATATCACTGTTGTT‑GCAACAGCCAGGCAGAAAAggt > 4:558619/1‑137 (MQ=255)
gTCGCAGGCAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCATCCCAGTTCTTCATAAACAGGCCGTCCACCTGATAACCCGGTTGTT‑GCAGCCGCCAGGCAGACACggaggcag > 6:266855/1‑137 (MQ=255)
gTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTAGTGCCAGTTCGTCATAAAAAGGCCTTCGACCTGCTATCCCTGTTTTT‑GCAACAGCCCGGCAGAAAAGGAGGAAt > 1:492464/1‑140 (MQ=255)
gTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTCTTCCCAGTTCTTAATAAACAGGCCGTCGACCTGATGTCCCGGTTGTT‑GCAACAGCCAGGGAGAAACGGTGGAAt > 7:189929/1‑140 (MQ=255)
aCAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTGTTGGTCCCAGGTCTTCATAAACAAGCCGTCGACCTGAGATGCCTGGTGTTGGCAAC‑GCCAGGCCGACACGGGGGATTCggcccc > 2:316041/1‑135 (MQ=255)
aCAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTGTTGCCCGTTGTTAATTAACACGCCTTCGACCAGCTATCACGGGTGTG‑GGAAACGCCAGGCAGCTACGGTGGTATCGccaac > 7:1021916/1‑138 (MQ=255)
aCAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCGTCATAAACAGGCCGTCGACCGGATATCCCGGTTGTT‑GCACCAGCCAGGCAGATACGGAGGGATCGACAcc > 8:504827/1‑140 (MQ=255)
ccTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAAAAGGCCATCGACCAGATATACCAGTTGTT‑GGAACAGCCCGGCAGAAAAGGAGGATTCGACAccgccg > 1:662796/1‑140 (MQ=255)
ccTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTGTTCCCAGGTCTTAATAAACAGGCCGTCGCCCGGATATACCTGTTGTT‑GGAACAGCCAGGCAGCAACGGAGGCATCGACAcccccc > 1:194697/1‑139 (MQ=255)
tGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTAATAAACAGGCCGTCGACCTGATATCCCTGTTGTT‑TCAACAGCCAGGCAGAAACGGAGGAATAGACAccgccc > 3:826566/1‑137 (MQ=255)
aGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTGTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCcgc > 6:527606/1‑139 (MQ=255)
aGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTGCCAGTTCTTCATAAAAAGGCCGTAGACCTGATATCCCAGTTGTT‑GCAACAGCCAGGCAGAAAAGGAGGAATCGACACCCCCGGACATGCcgc > 7:908315/1‑139 (MQ=255)
aGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCATCCCAGTTCTTGATAAACACGCCTTCGACCAGATATCCCAGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGAAAACGCCGGACCTGCcgg > 2:733186/1‑139 (MQ=255)
aGCCAGATCCGCTGCCGATGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTGATAAACAGGCCTTCGACCTGCTATCCCTGTTGGT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACCTGAcgc > 2:1042798/1‑139 (MQ=255)
ccAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCcga > 3:486261/1‑138 (MQ=255)
ccAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCGTCTTACCAGTTCTGCATAAACAGGCCGGCGACCTGATATCCGTGTTGTT‑GCAACAGCCAGGCAGCAAGGGAGGAATCCCCACCGCCGGCCATGCcgc > 4:642955/1‑137 (MQ=255)
ccgctgccgctgTGCAATATTCCTCACCGTCGTCTTATTGCCAGTTGTTAATAAACACGCCGTCGACCTGATATCCCGGTTGTT‑TGAACAGCCCGGCAGAAAAGGTGTAATCGAAACCGCCCGACAATCCGAAGATTa > 3:982719/1‑138 (MQ=255)
ctgccgctgTGCAATATTCCTCACCGTCGTCTTCTTACCAGTTCTTCATAAACAGGCCTTAGCCCTGATATACCTGTTGTT‑GCAACAGCCAGGCAGCAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACgttt > 8:116750/1‑140 (MQ=255)
tgccgctgTGCAATATTCCTCACCGTCGTCGTCTTCCCAGTTCTTCAAAAACAGGCCTTAGACAGGATATCCCAGTTGTT‑GCAACAGCCATGCAGAACCGGACGAATCCACACCCCCGGACAAGCCGACGATTACttatt > 6:380403/1‑140 (MQ=255)
cgctgTGCAATATTCCTCACCGTCTTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTg < 5:768248/140‑1 (MQ=255)
gctgTGCAATATTCCTCACCGTCGTCTTGTTCCCAGTTCTTCATAAACACGCCTTCGCCCTGCTATCCCTGGTGTT‑GCAACAGCACGGCAGAAAAGGAGGAATCGCCACCGCCGGACATTCCGGCGATTACTTTTTTTgg > 5:609002/1‑139 (MQ=255)
taaaTATTCCTCACCGTCGTCTTCTTCCCTGTTCTTCATAAAAAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCTGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGttt < 5:453116/138‑1 (MQ=255)
aaTATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCa < 1:872887/140‑1 (MQ=255)
atatTCCTCACCGTCGTGGTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GGAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAg > 1:243472/1‑140 (MQ=255)
tatTCCTCACCGTCGTCGTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGTAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGa < 5:238352/140‑1 (MQ=255)
ttCCTGACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACa < 8:339394/140‑1 (MQ=255)
cACCGTCGTCTTCTTCCGCGTTCTTCATCACCAGGCCTTCGCCCTGATATCCCTGTTGTT‑GCAACAGCCCGGCAGAAACGGAGTTATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTgta < 8:843614/140‑3 (MQ=255)
aaCCGTCGTATTCTTCCCAGTTATGCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCATAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTg < 4:337089/137‑1 (MQ=255)
aCCGTCGTCTTCTTCCCAGTTATTAATAAACAGGCCTTCGACCTTATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGTAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGAt < 5:340832/140‑1 (MQ=255)
ccGTCGTCTTATTACCAGTTCTTCATAAACAGGGCGTCGAACTGATATCCCTGTTTTT‑GCTCCAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACCTGCCGAAGATTACTTTTTTTTCTGTTTCAGACATTGGa > 4:822017/1‑138 (MQ=255)
tcgtcgTCTTCCCACTTCTTCATAAACAGGCCTTAGACCTGATATCCCTGGTGTT‑GCAACACCCCGGCCGAAAACGAGGAATCGCAACCGCCGGACATGCCGACGAGTAAATTTTTTTCGGTTTCAGACATTGGTtcacg > 2:409981/1‑139 (MQ=255)
gtcTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGGTTCAGACATTGGAtcaca > 4:433467/1‑137 (MQ=255)
gtcTTCTTCCCAGGTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCATGCAGAAACGGAGGAATAGACCCAGACCGAAATGCCCACGATTACTTTTTTTTCGTTTTAAGACAATTGAtacca > 4:590440/1‑134 (MQ=255)
cccAGTTCTGCATAAACAGGCCTTCGACCTGATATCCCTTTTGTT‑GCAACAGCCAGTCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTg < 1:590781/140‑1 (MQ=255)
aGTTCTTCATAAACAGGCCTTCGACATGATATCCCTGTTGTT‑TCAACAGACAGGCAGAAACGGAGGAATCTACACCGCCGGACATGCAGACGATTACTTTTATTGCGTTTTCAGACATTGGATCACTCACGCAATAGAAc > 8:190644/1‑140 (MQ=255)
cttcATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCa > 1:357151/1‑140 (MQ=255)
ttcATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCaa > 6:830592/1‑140 (MQ=255)
tcATAAACAGGCCTTCGACCTTATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAg < 1:943838/140‑1 (MQ=255)
tcATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGCAACGGAGGAATCGACACCGCCGGACATGCCGCCGATTACTTTTTTTGCGGTTTCAGACATTGGAGCACTCCCGACATTGAACTTCa > 3:610555/1‑138 (MQ=255)
tcATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCa > 3:615770/1‑138 (MQ=255)
tcATAAACAGCCCTACGACCTGATTCTCCTGTTTTT‑TCATATGACAGGCATAAAGGGAGTAATCTACACCGCCGGTCATGCCGACGATTACTTTTTTTGCGGTTTAAGACATTGGATCACTCACGACATTGAACTTCAAg < 8:593111/140‑1 (MQ=255)
cATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAgg > 6:87802/1‑140 (MQ=255)
tAACCAGGCCATCGACCTGATATCCCTGTTGTT‑GATACAGCAAGGCAGAAACGTAGGAATCGACACCGCCGGAAATGCCGACGATTACTTTTTTTGCGGTTTCATACATTGGATCACTCACGACATTGAACTTCAAggcg < 6:870385/140‑1 (MQ=255)
tAAACAGGCCTTCGACCTTATATCCCTGTTGTT‑GCAACAGCCAGGCATAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAggcg < 2:428589/140‑1 (MQ=255)
aaaaCCGGCCTTCTACCTGATATCCGTGTTGTT‑GCAACAGCCAGGAAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAggcg < 5:8499/139‑1 (MQ=255)
aaaaCAGGCCTTCGACCTGATATCCCTGTTGGT‑GCAACTGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAggcg < 2:104670/139‑1 (MQ=255)
acaaGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCATAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAggcggc < 1:698456/137‑1 (MQ=255)
aaCAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAggcggc < 5:667313/140‑1 (MQ=255)
aCAGGCCTTCTACCTTATATCCCTTTTGTT‑GCAACAGCCAGGCAGAAACGGAGTATGCGACACCGCCGGACATGCCGATGATTACTTTTTTTGCGGTTTCATACATTGGATCACTCACGACATTGAACTTCAAGgcggcg < 1:1068221/140‑1 (MQ=255)
aCAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGgcggcg > 1:842708/1‑140 (MQ=255)
cggCCTTCGCCCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTGCAAGGCGGCGTa < 7:924407/139‑1 (MQ=255)
aGGCCTTCTACCTGATATCCCTGGTGTT‑GCAACAGCCAGGCAGAAACTGAGGAATCGCCACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAggcggag < 4:610555/138‑3 (MQ=255)
aGGCCTTCGACCTGATTTCCCTGTTGTT‑GAAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGggggcg < 3:407496/138‑1 (MQ=255)
aGGCCTTCGACCTGATATCCCTGTTGTT‑GCACCAGCCAGGCAGAAACGGCGGAATCGCCACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGGCGGCGTa < 2:1045401/140‑1 (MQ=255)
aGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGgcggcg < 4:615770/138‑1 (MQ=255)
ggCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTAAGACATTGGATCACTCACGACATTGAACTTCAAGTCGGCGTAt > 7:660823/1‑140 (MQ=255)
gCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGGCGGCGTAtt > 7:265732/1‑140 (MQ=255)
ccTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGACGACGATTACTTTTTTTGCGGTTTAAGACATTGGATCAATCACGACATTGAACTTCAATGCGGCGTAtta > 6:603063/1‑139 (MQ=255)
cTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGGCGGCGTAtt > 4:128173/1‑138 (MQ=255)
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TACTCGGCAGCAAAGTTAACGGTGTGCAGTTCAATGCCAAGCTTGTCGCAGACAGCCTGGGCATCAGCCAGATCCGCTGCCGCTGTGCAATATTCCTCACCGTCGTCTTCTTCCCAGTTCTTCATAAACAGGCCTTCGACCTGATATCCCTGTTGTT‑GCAACAGCCAGGCAGAAACGGAGGAATCGACACCGCCGGACATGCCGACGATTACTTTTTTTGCGGTTTCAGACATTGGATCACTCACGACATTGAACTTCAAGGCGGCGTATTCTA > NZ_CP022686/4783196‑4783469
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
