Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,643,657 |
A→C |
16.1% |
G431G (GGT→GGG) |
dnaA ← |
chromosomal replication initiator protein DnaA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,643,657 | 0 | A | C | 16.1%
| 209.8
/ 3.1
| 126 | G431G (GGT→GGG) | dnaA | chromosomal replication initiator protein DnaA |
| Reads supporting (aligned to +/- strand): ref base A (39/61); new base C (21/3); total (62/64) |
| Fisher's exact test for biased strand distribution p-value = 1.98e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 132 total aligned reads displayed.
CTCACGTTCTACGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTGTAGTACT > NZ_CP022686/2643518‑2643796
|
cTCACGTTCTACGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGa < 4:871639/140‑1 (MQ=255)
cTCACGTGCTACGGTAAATTTCATAGGGTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCGCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGGCACGa < 6:343774/140‑1 (MQ=255)
gTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCTATCTTCCGGCAGGCATGAAGCACCGTCGTGTTGTAACGACCACCAAACGc > 7:312336/1‑138 (MQ=255)
gTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGACGTCCACCAAAAGc > 7:312335/1‑138 (MQ=255)
aaTTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTTGGACCGCCCCCCCAACGCATCGc > 5:85522/1‑140 (MQ=255)
aaTTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATc < 7:86018/138‑1 (MQ=255)
tttCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGc < 7:69802/138‑1 (MQ=255)
tttCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGc < 2:755391/138‑1 (MQ=255)
tttCATAGGTATACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGc < 1:353015/138‑1 (MQ=255)
tCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCa < 1:276082/138‑1 (MQ=255)
cATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGCCCACCACCAAAGGCATAGCCAAta > 5:241167/1‑139 (MQ=255)
ggTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAAtctc < 7:570671/138‑1 (MQ=255)
ggTTTAAGATGACAATGCTATGATTAAATTAGAAAAAGCTTCTTTGATCTCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCg < 4:835854/140‑1 (MQ=255)
ttACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCCCCAAAGGCATCGCCCATCTCCgg > 2:844766/1‑138 (MQ=255)
ttACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTAACGAAACTGCTCGAGCTTCCGGCAGGCATGATGCACCGTCGTGTGGGCACGACCACCAAAGGCCTGGCAAATCTACgg > 7:362304/1‑138 (MQ=255)
tACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCACCTGCTCGATCTTCCGGCAGGCATGAAGCTCCGTCGTGTGGTCACGACCCACAAAGGCTTCGCCAATCGCCGGAAg > 6:223813/1‑140 (MQ=255)
cGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAg < 1:758515/138‑1 (MQ=255)
cGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGGCACCACCCCCAAATGCATCGCCAATCAACGGAAg > 1:563653/1‑138 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAAt < 5:514859/124‑1 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTgg > 4:873565/1‑140 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTgg < 4:706958/140‑1 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTgg < 4:475026/140‑1 (MQ=255)
aCAATGGTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGAGCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACtgt < 8:776027/138‑1 (MQ=255)
cAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGACGACCACCAAAGGCATCGCCAAAATCCGGAAGACTGTGGt > 3:865741/1‑140 (MQ=255)
cAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGAACTTCCGGCAGGCATGAAGCACCGTCTTGTGTTAACAGCCCCCAAAACCAAACCCCAACACCGGAAGACTGTGGt > 3:284503/1‑140 (MQ=255)
aaTGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTACCGACCACCAACAGCATCGCCAAAGGGCGGAAGCCTGTgg > 1:194859/1‑138 (MQ=255)
aaTGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGGTGTGACGCCCCCCAAAGGCATCCCCAAACTACGGGAGCCAGTgg > 7:38298/1‑138 (MQ=255)
aTGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGt < 7:687350/138‑1 (MQ=255)
tCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGt < 2:143735/138‑1 (MQ=255)
tCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCa < 5:474600/140‑1 (MQ=255)
cTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACAGTCGTGTGGGAAAGACCCCCAAAAGCATCGCCAATAAACTGAATACTGTTGTTTTTCAg > 6:138258/1‑140 (MQ=255)
gATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCAACAAAGGCATCGCCCATCTACGGAAGACTGTGGTTAGTCAGca > 6:180022/1‑139 (MQ=255)
aTTAAATTAGAAAAATCTTCTTTGATATCGTTGCTCTCTTCACGCAACTGCTCGATCTTAAGGCAGGCATGAAGCACCGTCGTGTGGTCACCACCAAAAAAGGACTCTCCAAACAACGGAATAAAGTGGTTTGtaaacga > 3:689469/1‑134 (MQ=255)
aTTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCACCCAAGGCCTCGCCCCACTCCGGAAGCCGGTGGGTTGTCAGctc > 3:709362/1‑140 (MQ=255)
ttAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGctct < 6:466116/140‑1 (MQ=255)
ttAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGct < 7:382679/138‑1 (MQ=255)
tAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCCCCAAACGCCTCGCCAATAGCCCGAATACTGTGGTTAGTCaccac > 1:666523/1‑134 (MQ=255)
tAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGGCACGACCACCAAAGGCATCGCCAATCTACGGAAGACTGTGGTTAGTCAGctg > 2:455756/1‑137 (MQ=255)
aTTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCTATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCCCCAAAGGCATCGCCAATGTCCGGTAGACTGTGGTTTGTCAGCTATTTCg > 4:366751/1‑140 (MQ=255)
aTTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTTGTCACGCACCCCCAAGGCCTCGCCAAGCGGCGGCAGACGGTGGTTTGTCAggagttt > 7:277849/1‑132 (MQ=255)
aTTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGTAGACTGTGGTTTTTGAGCTCttt > 2:376385/1‑138 (MQ=255)
tAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCCCCCAAGGCCAAGCCAAAATACGGAAGACTGTGGTGAGTCAGCTCTTTCg > 2:857889/1‑138 (MQ=255)
tAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCACCAAAGGCATCGCCAATATCCGGCAGACGGTGGTTAGTACGCTCtttag > 7:73815/1‑136 (MQ=255)
tAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCg < 8:173896/138‑1 (MQ=255)
aTCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATGTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGcgcca < 5:138258/140‑1 (MQ=255)
aTCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAgcgc < 8:80576/138‑1 (MQ=255)
ttcttTGATATCGTGGCTCTCTTCACGCAACTGCTCGAGCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGcgccat < 7:702250/138‑1 (MQ=255)
ttGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGcgccatcgccat < 3:257797/140‑1 (MQ=255)
ttGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGcgccatcgccat < 3:534029/140‑1 (MQ=255)
atCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCCCCAAAGGCATCGCCAAACTCCGGAAGCCTGTGGTTAGTCAGCTCTTTCGCCCGCgccatcgccatcag > 7:53963/1‑136 (MQ=255)
gCTCTCTTCACGCAACTGCTCGATCTTCCGGCCGGCATGAAGCACCGGCGTGTGGTCACGACCACCAAAGTCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGAc < 6:25584/140‑1 (MQ=255)
gCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTTGGCACGCCCACCAAATGCATCGCCAATCGACGGTATACTGTGGTTAGTCCGCTATTTCGGCAGCGCCCTCGACATGCGGCGCGGAc > 6:417980/1‑140 (MQ=255)
gCTCTCTTCACGCAACTGATCGATCATCCGGCAGGCATGAAGCACCGTCGTGTGGGCACCCCCACCAAAAGCATAGCCAATCTTCGGAAGTCGGTGGTTAGGAAGCTCATTCGCCAGCCCCCAAGCCAACTTGCGCgggc > 4:660417/1‑138 (MQ=255)
ctTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGGGGTCACGCCCACCAAAGGCAACGCCAATATAAGGAAGACTTTGGTTTTTCCGCTCTTTAGCCAGCGCCATATCCATCTGGCGCGGACggg > 8:575460/1‑138 (MQ=255)
ttCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGGTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGc < 7:448249/138‑1 (MQ=255)
ttCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACCACCACCAAAGGCATCGCCAATATACCGCAGACAGTGGGTAATCAGCTATTTCGCCAGCGCCAACCCCAACTGGCGcggcccggccc > 4:99751/1‑139 (MQ=255)
cACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATATCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCCGCGCCATCCCCCTCAGGCGCGGACGGGCCAcc > 3:360160/1‑140 (MQ=255)
gCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCg < 1:444994/138‑1 (MQ=255)
gCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAg < 3:586439/140‑1 (MQ=255)
aaCTGCGCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAg < 2:144513/138‑1 (MQ=255)
tGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCCAAGGCATCGCCAATCGCCGGAAGGCTGTGGTTAGTCAGCTCTTTCGCCCGCGCCATCCCCATCTTGCGCGGACGGGCCACCGCGCgg > 8:361652/1‑138 (MQ=255)
gCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCCATCTCCGGAAGCCTGTGGTTAGTCAGCTCTTTCGCCCGCGCCATCGCCCTATGGCGCGGCCGGGCCCCCGCGCggg > 2:314921/1‑138 (MQ=255)
cTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCACCAAAGGCATCGCCAATCTCCGGTAGAATGTGGTTAGTCAGCTATTTCGCCCGCCCCATCGCCATCTGGCGCGGGCGGGGCACCGCGCgggg > 7:343438/1‑137 (MQ=255)
cTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATAGCCAATCTCCGGTAGACTGTGGGTTGTCAGCGGTTTCGCCAGCGCCAGCGCCATCTGGCGCGGACGGGCCCCCGAGCGGGATc > 6:444504/1‑140 (MQ=255)
cTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTAACGCACACCCAAGGCAACGCCAATGACCGGAAGACTGTGGTGATTCCTCTCTATCGCCAGCGACCTACCCATCTGGCCCCGACGGGCCCCCGacccggc > 2:826935/1‑132 (MQ=255)
cGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCCCCAAAGGACTGGCCAATGACCGGAAGACTGTGGGTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGCCGGGCCCCCGAGCGGGATc > 2:141783/1‑138 (MQ=255)
cGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTAACGCCCACCAAAGGCATCGCCAAACTCCGGAAGAATGTGGTTATTCAGCAAGTTCGCCAGCGCCCTAGCCCACTGGGGCCGACGGGCCCCCGCGCGGGATc > 7:778859/1‑138 (MQ=255)
gATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGAc < 5:834983/140‑1 (MQ=255)
tCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCCCCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATATGGCGCGGCCGGGCCCCCGAGCGGGCTcgccgc > 6:705479/1‑140 (MQ=255)
tCCGGCAGGCATGTAGCACCGTCGTGTGGTCACGACCAACATAGGCATCGCCATTCTCGGGTAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGGCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTg < 3:307294/140‑1 (MQ=255)
cGGCAGGCTTGAAGCACCGTCGTGTGGTCACGACCACCAACGGCATAGCCAATCTCCGGTAGACTGTTGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCTTCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTg < 1:99318/138‑1 (MQ=255)
ggcaggcaTGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCAGCGCCAATCTCCGGAAGACTGTGGTTAGTCATCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTgg < 2:670312/138‑1 (MQ=255)
ggcaTGAAGCACCGTCGTGTGGTCACGACCCCCAAAGGCATCGCCAATCTCCGGAAGACTGTGGGTAGTCAGCTATTTCGCCCGCGCCCTCGCCATCTGTCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAggc > 4:496992/1‑139 (MQ=255)
ggcaTGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGGTCGCCGCTTGGAAAggg > 6:614523/1‑139 (MQ=255)
ggcaTGAAGCACCGTCGTGTGGTAACGCCCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCCTCGCCAGATGGCGCGGTCGGGCCCCCGAGCGGGAGCGCCGCTTGGgaaagc > 6:799994/1‑137 (MQ=255)
caTGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCCTCGCCAATCTCCGGAAGACGGTGGTTAGTCAGCTCTTTCGCCAGCGCCAACGCCATCTGGCGCGGCCGGGCCCCCGAGCGGGATCGACGCTTGGAAAGga > 1:616440/1‑138 (MQ=255)
aGCACCGTCGTGGGTGCACGACCACCAAAGGCATCGCCAATCTCCTGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCcgc < 6:183459/140‑1 (MQ=255)
cgtcgtGTGGTGACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTTGTCAGCGCTTTCGCCAGCGCCATCGCCATCTGGCGCCGACGGGCCACCGAGCGGGATAGCCGCTTGGAAAGGAGATACGCGACtt > 4:186016/1‑140 (MQ=255)
cgtcgtGTGGTCACGCCCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTAAGCTCTTTCGCCAGCGCTATCTCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGCTCCGCGACtt < 4:220235/140‑1 (MQ=255)
cgtcgtGGGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCATCGCCATCGCCATCTGGCGCTGACGGGCCAACGAGCGGGATCGACGCTTGGAAAGGATCTCCGCGACtt < 4:689469/140‑1 (MQ=255)
gtcgtGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTATTCAGCTCTTTAGCCAGCGCCCTCGCCCTCTGGCGCGGAAGGGCCACCGAGCGGGATAGCCGCTTGGAAAGGAGATCCGCGACttt > 4:99696/1‑140 (MQ=255)
ggcgtGTGGTCACGCCAACCAACGGCATCGCCAATCTCCGGAAGACGGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCTGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACt < 8:544568/136‑1 (MQ=255)
ggtgtGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACttt < 8:547539/137‑1 (MQ=255)
ggtgtGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACttt < 8:377470/137‑1 (MQ=255)
cgggtcgTCACGACCACCAAAGGCATCGCCAATCTCCGGAATACTGTGGTTAGTCAGCTCTTTCGCCCGCGCCATCGCCATCTGGCGCGGACGGGCCACCGCGCGGGATCGCCGCTTGGAAAGGAGATCCGCGACttt < 7:34525/132‑1 (MQ=255)
tgtgGTCACGACCACCAAAGGCATCGCCAATCTCCGGACGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGa < 2:750372/138‑1 (MQ=255)
tgtgGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGa < 8:53963/138‑1 (MQ=255)
gggggTCACGACCACCAAAGGCCTCGCCAAGCTCAGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCAGCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATc < 5:476032/137‑1 (MQ=255)
tgGTCACGACCCCCAAAGGCCTCGCCCATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTAGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCCCCGAGCGGGATCGCCGCGTGGTAAGGAGATCCGCGACGTTGATCtt > 6:789823/1‑140 (MQ=255)
gggcACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCAGCGCCTTCTGGCGCGGACGGGCCACCGAGCGGGCTCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTg < 6:680192/137‑1 (MQ=255)
caccaccaccacAGGCATCGCCAATCTCCGCAAGACTGTGGTTAGTCAGCTCTTTCGCCTGCGCCATCGCCATCTGGCGCGGCCGGGCCACCGAGCGGGATCGACGCTGGGAAAGGAGATCCGCGACTTTGATCTTgtag < 3:594981/140‑1 (MQ=255)
cACGCCCACCAACGGCATCGGCAATCTCCGGAACTCTGTGGTAAGTCCGCTCTTTCGCCCGCTCCCTCGCCATCTTGCGCGTACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTgt < 2:109028/138‑1 (MQ=255)
cACGACCACCAAAGGCTGCGCAATTCTCCGTACGACGGTTGTTAGTCACCTCTTTCGCCAGCGCCATCGCCATCGGGGGCGTACGGGCCACCGTGGGGGAGCGACGTTTGGAAAGGATAACCGCGACTTTGATCTTgtat < 3:162490/140‑2 (MQ=255)
cACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTgtag < 3:144458/140‑1 (MQ=255)
aCGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTGTGATCTTgtagt > 3:708323/1‑140 (MQ=255)
aCGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTAGCCAGCGCCATCGCCATCAGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTgtagt > 3:429257/1‑140 (MQ=255)
aCGACCACCAAAGGCATCGCCAATCTACGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCCCCGAGCGGGATAGACGCGTGGAAAGGAGAAACGCGCCTTTGATCTTgta > 8:448115/1‑138 (MQ=255)
cGACCACCAAAGGCAGCGCAAATGTCCGGAAGACTGTGGTTATTCAGCTCTTTCGCCAGCCCCATCGCCATCTGGCGCGGAGGGGCCACCGAGCTGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTgtagta < 5:783549/140‑1 (MQ=255)
gACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTACTCAGCTCTTTCGCCAGCGCCCTCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTGGGAAAGGAGATCCGCGACTTTGATCTTgtatt > 7:360852/1‑136 (MQ=255)
accaccAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTGTAGTACt > 6:93454/1‑140 (MQ=255)
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CTCACGTTCTACGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTGTAGTACT > NZ_CP022686/2643518‑2643796
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
