Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,643,657 |
A→C |
9.9% |
G431G (GGT→GGG) |
dnaA ← |
chromosomal replication initiator protein DnaA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,643,657 | 0 | A | C | 9.9%
| 386.2
/ 4.6
| 204 | G431G (GGT→GGG) | dnaA | chromosomal replication initiator protein DnaA |
| Reads supporting (aligned to +/- strand): ref base A (68/106); new base C (23/2); total (96/108) |
| Fisher's exact test for biased strand distribution p-value = 3.79e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 209 total aligned reads displayed.
CTCACGTTCTACGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTGTAGTACT > NZ_CP022686/2643518‑2643796
|
cTCACGTTCTACGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGa < 4:418893/140‑1 (MQ=255)
cGTTCTACGGTAAATTTCATAGGTATACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAGTCACCGTCGTGTTTTCACAacc > 8:751474/1‑138 (MQ=255)
cTACGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTAACGAacacca > 8:1084668/1‑138 (MQ=255)
aCGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAgg < 6:642508/140‑1 (MQ=255)
ggTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAgg < 8:877453/138‑1 (MQ=255)
ggTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCa < 6:89851/140‑1 (MQ=255)
aaaTTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCACCAAAGGCAtag > 1:810095/1‑138 (MQ=255)
aaaTTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCg < 5:305773/140‑1 (MQ=255)
aTTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCCCCGTCGTGTGGGGACGACCACCAAAGGccacc > 7:584087/1‑134 (MQ=255)
aTTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGAGGTCACGACCACCAAAGGCAGCGcc > 2:961844/1‑140 (MQ=255)
tttCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCa < 1:1000968/140‑1 (MQ=255)
tttCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCa < 4:481721/140‑1 (MQ=255)
tttCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTAACGACCACCAAAGGCCTCGc > 8:894720/1‑138 (MQ=255)
tCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAAt < 2:624986/140‑1 (MQ=255)
tCATAGGTATACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAAt < 2:519997/140‑1 (MQ=255)
cATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCCCGACCACCAAAGGCATCGCCAAtc > 6:456682/1‑140 (MQ=255)
tAGGTTTACGATGACAATGTTCTGATTAAATTAGAATAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGACGGCCCCCAAAGGCATCGCCAAtc > 8:540808/1‑138 (MQ=255)
tACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCCCGACCACCAAAAGCCTCGCCCATAGCCGGaaa > 3:198334/1‑139 (MQ=255)
tACGATGACAATGTTCTGATTAAATTAGAAAAATCTGCTTTGATATCGTGGCTCTCTTCACGCCACTGCTCGATCTTCCGGCAGGAATGAAGCACCGTCGTGTGTGCGAGACCACCACAGGCATCGACAATCTCCGGAAg > 3:1072930/1‑140 (MQ=255)
cGATGACAATGTTCTTATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCAGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGAc < 2:306269/140‑1 (MQ=255)
cGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCAAGACCACCAAAGGCCTCGCCAATCACCCGAAg > 7:374792/1‑138 (MQ=255)
cGATGACAATGTGCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCGCTCTTCACGCATCTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGAc < 2:1094920/140‑1 (MQ=255)
tGAAAATGTTCTGATTAAATTAGAAAAATCATCTTTGATATAGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAATCACCGTCGTGTTGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACtgt < 6:257216/140‑1 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCTGCAGGCATGAAGCAACGTCGTGTGGTCTCATCCACCCAAGGCAAAGCCAAGCTCCGGAAGACTGTgg > 5:21446/1‑140 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGACGACCACCAAAGGCATAGCCCATCTACGGTAGACAGTgg > 4:765416/1‑140 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCACCAAAGGCATCGCCAATCTCCGGAAGACTGTgg > 1:726633/1‑140 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGAACACCAAAGGCATCGCCAATATCCGGAAGACTGTgg > 4:749357/1‑140 (MQ=255)
aCAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGAGCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGAGCCCCACCAAACGCATCGCCCATATCCGGAAGACAGTgg > 1:1040929/1‑140 (MQ=255)
aaTGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCCCCAAAGGCATCGCCCATCTCCCGCAGACTGTGGtt > 3:754523/1‑140 (MQ=255)
tCTGATTAAATTAGTAATATCTTCTTTGATATCGTGGCTCTCATCACGGAACTGCTCGATCTTCCGGGATGCATGAAGCACCGTCGTGTGGTGACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCa < 6:518767/140‑1 (MQ=255)
tCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGt < 7:140290/138‑1 (MQ=255)
tCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCa < 5:483555/140‑1 (MQ=255)
tCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCa < 3:847072/140‑1 (MQ=255)
cTGATTAAATTAGAAAAATCTTCTTTGTTATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTAACGGCCACCAAAGGCATCGCCAATCTCCGGAAGACTTTGGTTAGta > 8:318868/1‑137 (MQ=255)
cTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAg > 6:850841/1‑140 (MQ=255)
gATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGGCACGACCACCCAAGGCCTCGCCAATCTCCGGAAGACAGTGGGTAGTCAGca > 3:327167/1‑139 (MQ=255)
aTTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGACGCCCCCCAAAGGCATCGCCAATCTCCGGAAGACAGTGGGTATTCAGctc > 1:507969/1‑140 (MQ=255)
aTTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGGCCACCAAAGGCATCGCCAATCGCCGGAAGACTGTGGTTAGTCAGctg > 5:667944/1‑139 (MQ=255)
aTTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGctc > 4:686793/1‑140 (MQ=255)
tAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCCCGACCCCCAAACGCAACGCCAATCTCCGGAAGACTGGGGGTAGTCAGctc > 7:170473/1‑138 (MQ=255)
aTTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGACGCACCGTCGTGTGGTCACGACCACCAAACGCAACGCCAAACTACGGAAGACTGTGGTTAGTCAGCTCtttag > 4:728002/1‑138 (MQ=255)
aTTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAATGCATAGCCCAACTCCGCAAGTCAGTTGGTAGTAAGCTGATTCg > 3:262098/1‑140 (MQ=255)
aTTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCg > 2:24776/1‑140 (MQ=255)
tAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGcc < 1:615060/140‑1 (MQ=255)
tAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGcc < 5:852019/140‑1 (MQ=255)
aaaaaTCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTTGTCACGACCACCAAAGGCATCGCCCAACTCCGGAAGAAGGTGGTTAGTAAGCTCTTTCGCCAgc > 4:1114019/1‑140 (MQ=255)
aaaaTCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAgcg < 6:232769/140‑1 (MQ=255)
cttcttTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGcgccatc < 1:887969/140‑1 (MQ=255)
tGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGCCGCCCACCAAAGGCATCGCCAATATCCGGAAGACTGTGGTTAGTCAGCTGTTTCGCCAGCGCCATCGCCATAGGGCGCgg > 3:955833/1‑140 (MQ=255)
gCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGAc < 1:330531/140‑1 (MQ=255)
ctTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGGGGTCACGACCACCCAAGGCATCGCGACTATACGGAAGACTGTGGGTTGTCAGCGAGTTCGCCAGCCCCAACGCCATATGGCGCGGCCGGGcc > 6:1054201/1‑140 (MQ=255)
ttCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTGACGACCCCCAAAGGCATAGCCAATCTCCGGAAGACTGTGGGTTTTCAGCTCGTTCGCCCGCGCCCTCGCCATCGGGCGCGGGCGGGccc > 2:790130/1‑139 (MQ=255)
ttCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGCCCACCAAAGGCATCGCCAATCTCCCGAAGACAGTGGTTAGTCAGCTCTTTCGCCAACCCCATAGCCAACTGGCGCGGACGGGccc > 2:1023667/1‑139 (MQ=255)
ttCACCCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCTGGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCa < 6:671959/140‑1 (MQ=255)
gCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAg < 3:1022900/140‑1 (MQ=255)
cAACTGCTCGATCTTCCGGCAGGCATGAACCACCGTCTTGGGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGa < 8:434324/138‑1 (MQ=255)
tGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTAACGCCCACCAAATGCAACACACATATACGGAAGACTTTGGGTATTAACCTCAATCCCCACCGCCAGAGCCATCTGGCTCGGGCTGGCCCCCGACCCGGa > 3:884483/1‑140 (MQ=255)
cTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATc > 6:73332/1‑140 (MQ=255)
cGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCAACAAAGGCATAGCCAATATCCGGAAGCCGGTGGTTAGGCAGCTCGTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCCCCGAGCGGGCTc > 8:635058/1‑138 (MQ=255)
gATCTTCCGGCAGGCATGAAGCACCTGCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGACATCGCCATCTGGCGCTGACGGGCCACCGAGCGGGATCg < 8:173773/138‑1 (MQ=255)
tCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTAACGACCACCAAAGGCATAGGCAAACTCCGGAAGAATTGGGTTAGTCAGCGCTTTCGCCAGCGCCCTACCCATCTTGCGCCGACGTGCCCCCCAGCGGGATAGTCGc > 4:370607/1‑140 (MQ=255)
tCTTCCGGCAGGCATGAAGCACCGTCGTGTGGGCACGACCACCAAAGGCATCGCCAATATACGGAAGACTGTGGTTAGTAAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGTACGACGc > 4:874461/1‑140 (MQ=255)
cTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCt < 4:742148/140‑1 (MQ=255)
ttCCGGCAGGCATGAAGCACCGTCGTGTGGTGACGAACCCCAAAGGCAACGCCAAACTCCGGAAGGCTGTGGTTAGTCAGCGCTTTAGCCAACGCCATCGCCCTAAGGCCCGGCCCGGGCCCCCAGCGGGTTAGACGc > 8:218789/1‑138 (MQ=255)
cGGCAGGCCTGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGa < 6:138258/140‑1 (MQ=255)
gcaggcaTGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAAACACCGGCAGACTGGGGTTAGTCAGCTCTTTCGCCAGCGCCATAGCCATCTGGCGCGGACGGGCCCCCGAGCGGGATCGCCGCTTGGa > 7:333195/1‑138 (MQ=255)
ggcaTGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCg > 4:656969/1‑116 (MQ=255)
ggcaTGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCg < 3:656969/116‑1 (MQ=255)
tGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTTGTCAGCTCTTTCGCCCGCGCCATCGCCATCTGGCGCGGACGGGCCCCCGCGCGGGATAGACGCTTGGAAAGGAGAta > 2:124811/1‑139 (MQ=255)
acgCACCGTCGTGTGGTCACGACCACCAAAGGCAGCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATc < 8:888880/136‑1 (MQ=255)
aaGCACCGTCGTGTGGTCACTACCACCATAGGCATCGCAAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCTGCGCCATCGCCATCTGGCGCGGTCGGGCCACCGCGCGGGATCGACGCTTGGAAAGGAGATCcg < 4:170505/140‑1 (MQ=255)
aaGCACCGGCGTGGGGTCACGACCACCAAAGGCATCGCCAATCTCCGTAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATc < 8:381239/138‑1 (MQ=255)
aGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCACCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCcgc < 5:456682/140‑1 (MQ=255)
aCCGTCGTGTGGTCACGACCCCCAAAGGCATCGGCAATCTCCGGAAGACTGGTGTTAGTCAGGGCTTTCGCCCGCGGCATCGCCATCTTGGGCGGGCGGGCCCCCGAGCGGGATCGACGGGTGGAAAGGAGATCCGCGag > 4:562800/1‑139 (MQ=255)
ccGTCGTGTGGGGACGGCCACCAAAGGCATCGCCAATGTCCGGAAGACTGTGGGTTGTCAGCTCTTTCGCCAGCGCCCTCGCCATCTGGCGCGGACGGGGCCCCGAGCGGGGTCGCCGGGTGGGATGGAGCTCCGCGAcg > 4:341672/1‑139 (MQ=255)
cgtcgtGTGGTCACGCCCACCAAAGGCATCGCCAATCTCCGGTAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCCTCGCCATCTGGCGCGGACGGGCCCCCGAGCGGGGTCGCCGCTTGGAAAGGAGATCCGCGACtt > 4:1039799/1‑140 (MQ=255)
cgtcgtGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGGCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACtt < 1:1132107/140‑1 (MQ=255)
cgtcgtGTGGTCACGACCACCAAAGGCAGCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACtt < 1:401442/140‑1 (MQ=255)
cgtcgtGTGGTCACCACCACCAACGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGAc < 7:772050/138‑1 (MQ=255)
cgtcgtGTGGGCACGACAACCAAAGGCATCTCCAATCTCCGGAAGAGTGTGGTTAGTCAGCTGTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGAGCGACGCTTGGAAAGGAGATCCGCGACtt < 2:168734/140‑1 (MQ=255)
cggcgtGTGGTCACGACCACCAAAGGCATCTCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACtt < 2:78680/137‑1 (MQ=255)
ggtggGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGa < 6:967597/139‑1 (MQ=255)
cgtGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGa < 2:708894/140‑1 (MQ=255)
cgtGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCAGCGCCAGCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGa < 5:797461/140‑1 (MQ=255)
cgggtgGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGGGGTTAGGCAGCTCTTGCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGa < 2:471884/137‑1 (MQ=255)
gtggGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCCCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGAt < 4:198334/140‑1 (MQ=255)
tgtgGTCACGACCACCAAAGGCATCGGCAATCTCCGGACGACTGGGGTTAGGCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTTGAAAGGAGATCCGCGACTTTGa < 8:1009715/138‑1 (MQ=255)
tgtgGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCCCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATc < 5:168952/140‑1 (MQ=255)
tgtgGTCACGACCACCAAAGGCAGCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGTAGATCCGCGACTTTGATc < 3:177370/140‑1 (MQ=255)
tgtgGTCACGACCACCAAAGGCAGCGCCAATCTCCGGAAGACTGTGGATAGTCAGCTCTTTCGCCAGCGCCATCGCCATCGGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATc < 3:562711/140‑1 (MQ=255)
tgtgGGCACGACCACCAAAGGCAGCGCCAATCTCCGGAAGACAGTGGTTAGGCAGCTCTTTCGCCAGCGCCCTCGCCATCTGGCGCGGACGGGCCACCGCGCGGGCTCGGCGGGTGGAAAGTAGCTCCGCGCCGTTgctg > 2:1109214/1‑137 (MQ=255)
tgGTGACGACCACCAAAGGCATAGCCAATCTACGGAAGACTGTGGTTTGTCAGCTCTTTCGCCAGCGCCCTAGCCATCTGGCGCGGGCGGGCCCCCGCGCGGGGTCGGCGCTTGGGAAGGAGATCCGCGCCGTTGATc > 8:601660/1‑138 (MQ=255)
ctcGACAACCAAAGGCAGGGCCAATCTCCGTCAGACTGTGGTTAGTCCGGTCTTGCGCCCGCGCCATCGCCAGCTGGCGGGGACGGGCCACCGAGCGGGATCGACGCTTGGAACGGCGATCCGCGACTTTGATCTTgt < 7:840025/136‑1 (MQ=255)
cACGACCACCAAAGGCATCGCCAATCTCCTGATGACTGTGGTTAGTAAGATATTTCGCCCGCGCCATAGCCATCTGGCGCGTACGGGACACGGAGCGGGATCGACGCTTGTAAAGGAGATCCGCGACTTTGATCTTgtag < 5:815303/140‑1 (MQ=255)
aCGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCTCCATCGCCATCTGGCGCGGACGGGCCAACGAGCGGGATAGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTgtgtt > 3:399270/1‑137 (MQ=255)
aCGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGa > 1:656789/1‑111 (MQ=255)
cGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTgtagta < 3:440221/140‑1 (MQ=255)
cGACCACCAAAGGCATCGCAATTCTCCGTATGACTGTGGTTAGTCAGCTCTTTCGCCTGCGCGATGGCCATCTGGCGCTGAGGGGCCTCCTAGCGGGTTCGATGCTTGGAAAGGAGATCCGCGACTTTGATCTTgtag < 7:128288/138‑1 (MQ=255)
cGACCACCAAAGGCAGCGACATTCTCCGGAAGTCTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTgtagta < 1:1069158/140‑1 (MQ=255)
accaccAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTGTAGTACt > 5:1099892/1‑140 (MQ=255)
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CTCACGTTCTACGGTAAATTTCATAGGTTTACGATGACAATGTTCTGATTAAATTAGAAAAATCTTCTTTGATATCGTGGCTCTCTTCACGCAACTGCTCGATCTTCCGGCAGGCATGAAGCACCGTCGTGTGGTCACGACCACCAAAGGCATCGCCAATCTCCGGAAGACTGTGGTTAGTCAGCTCTTTCGCCAGCGCCATCGCCATCTGGCGCGGACGGGCCACCGAGCGGGATCGACGCTTGGAAAGGAGATCCGCGACTTTGATCTTGTAGTACT > NZ_CP022686/2643518‑2643796
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
